<p>Bacteria and fungi dominate the decomposition of aquatic plants, a major process in the carbon and nutrient cycling in many aquatic systems. Although phylogenetically distant, bacteria and fungi often live in close proximity with each other. Since these microorganisms also have similar ecological functions, interactions have developed between them. This thesis explores the nature of such interactions, and the potential effects on key components of the decomposition process. The thesis includes a critical assessment of the ergosterol method for determination of fungal biomass, a survey of the environmental factors determining the distribution and taxa numbers of litter-decomposing bacteria and fungi in lakes, and a number of experiments on the interactions between bacteria and fungi. In all the experiments performed, fungi responded to bacterial presence through antagonism, although different fungal strains, bacterial communities and substrates were used. The antagonism seemed to be caused by interference competition for substrate. The fungal effect on bacteria was less consistent. Bacterial growth was suppressed, unaffected, or even enhanced by the presence of fungi. Fungi contributed more to extracellular enzyme production than bacteria, and bacteria were probably able to assimilate intermediate decomposition products formed through the activity of extracellular enzymes of fungal origin. Thus, the effect on bacteria from interacting with fungi was determined by the balance between competition and benefit from excreted enzymes. Bacteria and fungi also used different size fractions of the organic matter, according to their different enzymatic capacities. Hence, bacteria appeared to assimilate low-molecular-weight compounds, while high-molecular-weight compounds were utilized primarily by fungi. </p><p>In brief, the ecological interactions influenced the growth and hence also the biomass development of bacteria and fungi, which affected enzyme activity as well as utilization of dissolved organic matter. Therefore, I suggest that interactions between bacteria and fungi influence degradation of plant litter in aquatic systems.</p>

Bacteria and fungi dominate the decomposition of aquatic plants, a major process in the carbon and nutrient cycling in many aquatic systems. Although phylogenetically distant, bacteria and fungi often live in close proximity with each other. Since these microorganisms also have similar ecological functions, interactions have developed between them. This thesis explores the nature of such interactions, and the potential effects on key components of the decomposition process. The thesis includes a critical assessment of the ergosterol method for determination of fungal biomass, a survey of the environmental factors determining the distribution and taxa numbers of litter-decomposing bacteria and fungi in lakes, and a number of experiments on the interactions between bacteria and fungi. In all the experiments performed, fungi responded to bacterial presence through antagonism, although different fungal strains, bacterial communities and substrates were used. The antagonism seemed to be caused by interference competition for substrate. The fungal effect on bacteria was less consistent. Bacterial growth was suppressed, unaffected, or even enhanced by the presence of fungi. Fungi contributed more to extracellular enzyme production than bacteria, and bacteria were probably able to assimilate intermediate decomposition products formed through the activity of extracellular enzymes of fungal origin. Thus, the effect on bacteria from interacting with fungi was determined by the balance between competition and benefit from excreted enzymes. Bacteria and fungi also used different size fractions of the organic matter, according to their different enzymatic capacities. Hence, bacteria appeared to assimilate low-molecular-weight compounds, while high-molecular-weight compounds were utilized primarily by fungi. In brief, the ecological interactions influenced the growth and hence also the biomass development of bacteria and fungi, which affected enzyme activity as well as utilization of dissolved organic matter. Therefore, I suggest that interactions between bacteria and fungi influence degradation of plant litter in aquatic systems.

Shallow sheltered Baltic Sea bays are ecologically important habitats that harbour a unique vegetation community and constitute vital reproduction areas for many coastal fish species. Knowledge about the invertebrate community in these bays is, however, limited. This thesis examines the macroinvertebrate community in shallow sheltered Baltic Sea bays and how it is affected by: (1) the natural morphometric isolation of bays from the sea due to post-glacial land uplift; and (2) differences in vegetation types. The invertebrate biomass and number of taxa was found to decrease with increased bay isolation. The taxon composition changed from dominance by bivalves and gastropods in open bays to a community composed of a larger proportion of insects in isolated bays. Stable isotope analysis indicated epiphytes and periphyton as the major energy resources for most of the examined consumers, but the relative importance of these in relation to larger plants decreased for some consumers with increased bay isolation. A comparison of invertebrate abundance between plants revealed a close relationship with morphological complexity of the plants. More complexly structured plants had higher invertebrate abundance than plants with simpler morphology. The results suggest that management of these coastal habitats should be dynamic and take into consideration the natural change in invertebrate community resulting from the slow bay isolation process. In addition, the results imply that changes in the aquatic vegetation due to anthropogenic influences could induce changes in the invertebrate community as the plant habitat structure is altered. A changed invertebrate community may in turn affect higher trophic levels since invertebrates are important food for many fish and waterfowl species. / At the time of the doctoral defense, the following papers were unpublished and had a status as follows: Paper 2: Submitted. Paper 4: In press.

Classiquement étudié par différentes disciplines scientifiques, le domaine de l'eau est au cœur des préoccupations environnementales contemporaines. En Europe, l'évaluation et le suivi de l'état écologique des "masses d'eau" sont désormais exigés par la législation communautaire, la directive cadre sur l'eau (DCE - 2000/60/CE) fixant des objectifs pour leur préservation ou leur restauration le cas échéant. Dans ce contexte, des expériences d'utilisation de l'imagerie satellitaire en appui au suivi écologique des eaux se sont succédées en Europe, notamment pour les masses d'eau côtières et pour les grands lacs. Malgré cela, la précision spatiale de l'imagerie utilisée pour ce type de suivi ne permet pas l'observation fine de secteurs littoraux très proches de la côte ou de lacs avec une surface réduite (par ex. inférieure à 5 km²). Pour ces espaces aquatiques particuliers, pourtant très nombreux, l'utilisation de la télédétection satellitaire est moins sollicitée. Cette recherche doctorale a été réalisée sur une zone littorale réunissant plusieurs de ces espaces aquatiques peu investigués par la télédétection satellitaire. Situé à la frontière orientale de l'Europe et à distance égale du pôle nord et de la ligne de l'équateur, le delta du Danube, en tant qu'espace naturel remarquable, bénéficie de différents statuts de protection (réserve de biosphère, site RAMSAR, patrimoine mondial naturel de l'UNESCO). Ceux-ci s'expliquent en grande partie par la forte diversité d'espaces aquatiques aussi bien sur la plaine deltaïque que sur la zone côtière adjacente (bras de fleuve, chenaux, lacs, baies, golfes, marais, îles-barrières). Ce continuum hétérogène, constituant l'hydrosystème du delta du Danube, et son prolongement en mer côtière, sont l'objet principal de ce doctorat. La notion d'échelle occupe une place centrale dans notre démarche d'analyse puisque l'on est à l'intersection de deux grands systèmes (le bassin versant du Danube et la mer Noire) dont les étendues sont de deux ordres de grandeurs plus vastes que celle du delta ; la dimension temporelle est aussi fondamentale dans la mesure où les processus de morphogénèse et de remaniement (naturels et anthropiques) se font fortement ressentir et se traduisent par une mobilité importante des formes de relief ainsi que des éléments de l'hydrographie deltaïque. Au delà des évolutions sur le moyen et long terme, la variabilité spatio-temporelle contemporaine des eaux au pas de temps intra-annuel (saisonnier et intra-saisonnier), jusque-là peu étudiée, a également été appréhendée dans cette thèse. Par son côté exploratoire, la mise en place d'une chaîne de traitements d'images satellitaires adaptée à l'étude des eaux deltaïques représente, en soi, l'objectif méthodologique principal de ce doctorat. Dans cette voie, différents lots d'images ont été mobilisés : en fonction des fluctuations du niveau d'eau du Danube, nous avons retenu la période 2006-2009, étudiée à travers un total de 85 images satellitaires, dont 52 à moyenne résolution spatiale (MERIS) et 33 à haute résolution spatiale (ALOS AVNIR-2, SPOT HRVIR, Landsat TM et ETM+) ; à ce premier lot s'ajoute une soixantaine de prises de vue "historiques" couvrant la période comprise entre 1972 et 2005 (capteurs de la série Landsat MSS, TM et ETM+), ainsi que, pour la période plus récente, cinq images Landsat TM de 2010 et 2011. Trois procédés distincts mais complémentaires ont été mis en œuvre pour traiter cet ensemble hétérogène d'images. L'analyse intégrée des résultats obtenus avec des données hydrologiques et météo-océanographiques nous a permis d'apporter des nouveaux éléments de compréhension sur le fonctionnement actuel et passé du delta du Danube.

According to the Water Framework Directive of the European Union, macrophytes should be used as indicators in the ecological and environmental monitoring of lakes. In the member state Sweden the Environmental Protection Agency has elaborated assessment criteria for determining lake status based on macrophytes. The main focus of this thesis is to evaluate the efficiency of the assessment criteria for macrophytes. In addition the concordance between the ecological status classes of the four quality factors included was analysed. The assessment criteria for macrophytes are based on the total phosphorus preference of the respective species. The focus is thus mainly on the nutrient level of the investigated lakes and the environmental problem monitored is eutrophication. Macrophytes are one of the five biological quality factors used for lakes. The others are phytoplankton, diatoms, benthic fauna and fish. The two latter were included in this thesis. In addition to the biological factors the chemical factor, nutrients in lakes, i.e. the total phosphorus, was included. The macrophyte composition was investigated in two eutrophic Uppland lakes: Lake Trehörningen and Lake Edasjön. Since the assessment criteria were launched in 2007 there have been problems reported regarding the outcome of the methods. The results are sometimes inconclusive for eutrophicated lakes and especially for lakes with naturally high levels of nutrients. In this study the macrophyte species composition was compared with the nutrient level of different lakes. Some species were found in equal shares in oligotrophic lakes as in eutrophic, e.g. Nymphaea candida and Nuphar lutea. Hence they were considered less suitable as elements in the method evaluated. A couple of species were present in predominantly oligotrophic (e.g. Lobelia dortmanna) or eutrophic (e.g. Hydrocharis morsus-ranae) lakes, respectively. They were regarded as better indicators since they ”preferred” lakes either poor or rich in nutrients. It is important to point out that all the other biological quality factors used, except for macrophytes, are multimetric. I conclude that more parameters are needed for evaluation of macrophytes in lakes. Tentatively, the degree of coverage of the plants and algae, the presence and degree of coverage of invasive nonnative species, lake lowerings and the consequent composition and abundance change, all should be tested as additional parameters.  A high level of concordance was verified for the status classifications of the four quality factors in lakes of oligotrophy as well as in lakes of eutrophy, i.e. no particular  pattern based on trophy level was found. The macrophyte inventories of the two Uppland lakes both resulted in a moderate ecological status for macrophytes.

The numerous benefits that wetlands provide make them essential to ecosystem services and ecological functions. Historically, wetland losses have been caused by natural and anthropogenic changes. In Texas, nearly 50% of coastal wetland habitat has been lost since the 1930s and losses in the Lower Neches watershed have been some of the most extensive. Restoration is a way to mitigate these losses and can be accomplished in many ways. Each restoration design creates different aquatic habitats that can influence both submerged aquatic vegetation (SAV) and faunal communities. The restoration of the Lower Neches Wildlife Management Area (LNWMA) has created the conditions for the growth of the invasive submerged macrophyte, Myriophyllum spicatum (Eurasian watermilfoil) which may be competing with the native aquatic grass, Ruppia maritima (widgeongrass) for essential nutrients. In this study, an attempt was made to link restoration design with both SAV and aquatic fauna community structures by using a throw trap to characterize assemblages observed in three different types of restored marshes. We also performed two controlled mesocosm experiments in 0.5 gal aquariums to determine growth inhibition by M. spicatum on R. maritima. Analyses using Kruskal-Wallis non-parametric test determined that temporal variations in fauna and SAV community composition was greater than any restoration effect. Discriminant Function Analyses (DFAs) determined two to three key faunal species that best predicted association among restoration designs, but linear regressions could not determine any consistent relationship between individual species density and biomass of the dominant SAV species, M. spicatum. For the mesocosm experiments, M. spicatum inhibited the biomass production and branch count of R. maritima when the two species are grown together (ANOVA, p = 0.004 and 0.003, respectively). Changes in SAV assemblages due to competition and habitat characteristics could play a major role in determining faunal community. In order to minimize the temporal effect observed and better determine any habitat pattern that may be present, a much longer study is necessary.

The scope of this thesis was to identify, describe and quantify important life-history traits for the pseudoannual aquatic plant Ranunculus lingua in different ecological settings, by comparing populations from geographically marginal vs. central habitats. Results from a four-year field study showed that abiotic factors (water-level fluctuations and associated processes) tended to have a greater influence in marginal populations, whereas biotic factors (competition, insect grazing and fungal infections) dominated in central populations. This was reflected in different depth distribution of ramet numbers and ramet sizes between the areas, and In different dynamic patterns, with a higher flux of ramets in marginal populations. In a reciprocal transplant experiment, marginal ramets produced more but smaller rhizomes, whereas central ramets produced Individually larger but fewer rhizomes, irrespective of transplant site. A possible selection for genotypes producing large rhizomes in the central habitat was supported by the fact that initially smaller ramets were more likely to be diseased by the fungal pathogen Peronospora gigantea and damaged by insect grazing. In the marginal population, where density-independent mortality factors tend to dominate, a high reproductive output, expressed in production of high numbers of rhizomes, was suggested to be a favoured life-history trait. In a glasshouse experiment, ramets from marginal and central populations were grown in low and high densities and under three contrasting nutrient levels. The allocation to sexual structures was generally very low, and did not incur any costs in terms of reduced rhizome production. Rhizome production showed strong positive allometrical relationships to mother ramet size. Increasing mother ramet size resulted in a larger increase in rhizome numbers for the marginal than for the central population, whereas the increase in mean rhizome mass was more pronounced for the centred population. Both populations showed similar reductions in rhizome production in response to increased density and lowered nutrient levels, which could not be explained by size-dependent effects adone. The dispersal, dynamics and distribution of R. lingua were studied in a marginal river population in northern Sweden, where the only means of dispersal is by vegetative diaspores, i.e. floating rhizome fragments. Stranding occurred mainly in river curves and at obstacles, and the distribution of established stands was also highly correlated with these features. Relative changes in ramet numbers were correlated with water-level fluctuations during the present and previous growing seasons, with winter low-water, and with duration of spring-flood. The predictability of change was high within but low between stands. It was concluded that the patterns and mechanisms of dispersal are fundamental for local distribution patterns as well as variation in regional abundance in R. lingua / <p>Diss. (sammanfattning) Umeå : Umeå universitet, 1992, härtill 4 uppsatser</p> / digitalisering@umu

La rivière Essonne est influencée quantitativement et qualitativement par la nappe de Beauce. L'eau de cette nappe possède des concentrations en nitrates élevées et qui continuent d'augmenter, représentant ainsi une menace croissante pour la qualité du cours d'eau. Des cressonnières (zones humides artificielles où le cresson de fontaine [Nasturtium officinale R. Br.] est cultivé) étaient autrefois très nombreuses entre ces deux masses d'eau, mais sont aujourd'hui massivement abandonnées. Or, ces zones humides jouent potentiellement un rôle épurateur vis-à-vis des nitrates, et pourraient contribuer au bon état du cours d'eau en limitant les transferts de ces nutriments (zones tampons) de la nappe vers la rivière. Ce travail a donc pour objectif d'étudier l'élimination des nitrates dans les cressonnières, mais également l'évolution de ces zones humides après l'abandon de la culture du cresson, et ses conséquences sur l'épuration. Pour cela, nous nous sommes basés sur l'étude d'un site expérimental (Maisse, 91, France) comprenant plusieurs stades d'abandon et sur des expérimentations en laboratoire (bioréacteurs). Les successions de macrophytes après l'abandon de la culture ont été étudiées sur le site expérimental et dans 14 autres sites de la vallée de l'Essonne. Après l'abandon de la culture, le cresson ne se maintient pas dans les fosses. On observe alors une évolution progressive vers un milieu terrestre, avec la colonisation successive par des hydrophytes pionnières ou invasives (Lemna minuta Kunth.), puis par des hélophytes pionnières (Epilobium hirsutum L., Typha latifolia L., Phragmites australis (Cav.) Steud.). Enfin, il s'établit une roselière avec l'apparition d'espèces arbustives et ligneuses (Salix sp), qui s'accompagne d'un comblement des fosses et qui semble constituer une transition vers une forêt alluviale. Au cours du passage de l'eau dans les fosses du site expérimental, une partie des nitrates a été éliminée. Les fosses cultivées ont été les plus efficaces avec un taux moyen de 1770 mg NO3-/m²/jour au cours des trois années de suivi. En comparaison, les fosses abandonnées ont montré des taux d'élimination largement inférieurs allant de 550 à 750 mg NO3-/m²/jour. Toutefois, ces taux n'ont permis qu'une faible diminution des concentrations (approximativement 44 mg/L en entrée à 42 mg/L en sortie) à cause de temps de séjour trop courts de l'eau dans les fosses. Les taux d'élimination des nitrates ont varié de façon saisonnière, avec un maximum en été et un minimum en hiver. L'ampleur des variations saisonnières a cependant été beaucoup plus forte dans les fosses cultivées que dans les fosses abandonnées. L'estimation des prélèvements par les macrophytes a montré que la dénitrification est la voie majoritaire de l'élimination des nitrates (70 à 85% de l'élimination totale). Des mesures de dénitrification potentielle en bioréacteurs ont montré que ce processus était limité par la disponibilité du carbone organique. Or, le cresson des fosses cultivées représente une source de carbone très disponible, par rapport aux hélophytes (Phragmites australis) qui dominent les cressonnières abandonnées. L'effet des cressonnières sur les concentrations en nitrates de la rivière Essonne est actuellement limité, mais peut être amélioré par la gestion des sources de carbone et des temps de séjour de l'eau dans ces zones humides.

Les zones littorales à macrophytes ont un rôle fonctionnel important dans les hydrosystèmes fluviaux. Outre leur forte productivité, ces milieux se caractérisent également par une forte biodiversité. Cependant, les liens pouvant exister entre hétérogénéité spatiale, biodiversité et flux de matière restent encore peu connus. En milieu aquatique, les microcrustacés représentent un maillon clef entre les microorganismes eucaryotes, qui sont les principaux producteurs d'acide gras polyinsaturés (AGPI), et le compartiment piscicole. Dans ce travail de thèse, nous avons donc cherché à savoir comment la diversité des cladocères rencontrée dans une zone littorale à macrophytes pouvait affecter le transfert des AGPI dans les réseaux trophiques. L'approche vers laquelle s'est orienté ce travail combine à la fois des études menées en milieu contrôlé, permettant des expériences de nutrition, ainsi que des études menées en milieu naturel. Cette double approche permet de faciliter l'interprétation des résultats issus des analyses lipidiques, isotopiques et isotopiques de composés spécifiques. Nos résultats montrent ainsi qu'il n'existe pas de variabilité dans les capacités d'accumulation et de bioconversion des AGPI chez les cladocères coexistant dans une zone littorale à macrophytes. D'après ces résultats, il semble donc que le principal facteur influençant la variabilité des transferts d'AGPI vers le compartiment piscicole soit la stratégie alimentaire et le compartiment trophique exploité par les différentes espèces de microcrustacés. En effet, outre le seston, notre étude montre que certaines espèces de cladocères rencontrées en zone littorale sont capables d'exploiter l'épiphyton et le neuston. Les analyses lipidiques mettent de plus en évidence, que la diversité des compartiments trophiques exploités s'accompagne d'une variabilité d'apports en AGPI. Dans notre étude, l'épiphyton est ainsi significativement plus concentré en AGPI que le seston. A l'interface air-eau, le neuston se caractérise de plus, par une forte accumulation de matière organique d'origine allochtone qui, dans le cas d'une pluie de pollen, représente une source de carbone et d'AGPI non négligeable pour certaines espèces de microcrustacés. Dans les zones littorales à macrophytes, la complémentarité des espèces de cladocères entraine donc une utilisation plus complète des ressources. La diversité des compartiments trophiques, associée à la diversité des microcrustacés, permet donc probablement une optimisation du transfert des AGPI vers les niveaux trophiques supérieurs.

Made available in DSpace on 2014-06-11T19:35:43Z (GMT). No. of bitstreams: 0 Previous issue date: 2009-06-02Bitstream added on 2014-06-13T20:46:50Z : No. of bitstreams: 1 souza_up_dr_rcla.pdf: 976950 bytes, checksum: b3702264109c8e9210e947b1e4df6b90 (MD5) / Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / O objetivo geral do presente estudo foi analisar a biologia e o ciclo de vida de Astyanax cf. scabripinnis paranae no ribeirão Grande, um riacho de cabeceira localizado no Parque Estadual da Serra do Mar (PESM), Núcleo Santa Virgínia, SP. Os exemplares foram coletados mensalmente de janeiro a dezembro em 2004 e 2006, utilizando-se redes de espera, redinha de mão e covo. Foram coletados dados de temperatura da água, oxigênio dissolvido e pH. Dados de pluviosidade, umidade relativa e temperatura do ar foram obtidos junto à Estação Meteorológica do PESM. Os peixes foram fixados em formalina a 10% e conservados em álcool 70%. No laboratório foram mensurados quanto ao comprimento total e padrão, peso e registrados os graus de repleção estomacal, de gordura acumulada, o sexo e os estádios de maturação gonadal. As correlações entre as variáveis ambientais e os meses de coletas foram verificadas por uma análise de componentes principais, que indicou uma separação entre períodos mais chuvosos (outubro a abril) e menos chuvosos (maio a setembro). A dieta foi analisada pelo grau de preferência alimentar. Diferenças no consumo de itens autóctones e alóctones e possíveis mudanças ontogenéticas ao longo do desenvolvimento da espécie foram verificadas por uma análise de correspondência. Para o estudo da reprodução foram analisadas as variações nos estádios de maturação, relação gonadossomática, grau de gordura acumulada, condição corporal, fecundidade e tipo de desova. O comprimento médio de primeira maturação gonadal foi estimado pelo ajuste não-linear e a condição corporal foi avaliada por modelos de análise de covariância. A fecundidade foi estimada pelo método volumétrico e relacionada ao comprimento padrão, ao peso total, ao peso das gônadas e à relação gonadossomática. No estudo do crescimento, a separação das coortes... / The present study aimed to analyze the biology and ecology of Astyanax cf. scabripinnis paranae in the Ribeirão Grande, a headwater stream located in the Parque Estadual da Serra do Mar (PESM), Núcleo Santa Virgínia, SP. The fishes were sampled monthly from January to December in 2004 and 2006, using gillnets, sieves and funnel traps. Temperature, dissolved oxygen and pH of the water were measured. Pluviometric data, relative humidity and temperature of the air were obtained in the Meteorological Station of PESM. The fishes were fixed in 10% formalin and conserved in 70% alcohol. In the laboratory they were measured as for the total and standard length, weighed and registered the degrees of stomach repletion, of accumulated fat, the sex and the stadiums of gonad maturation. The correlation structure among the environmental variables measured in the sampling collections was verified by a principal components analysis (PCA), which indicated a separation among rainier (October to April) and the less rainy periods (May to September). Differences in the consumption of autochthonous and allochthonous items and possible ontogenetic changes along the specimens development were verified by a correspondence analysis (CA). For the study of the reproduction the variations were analyzed at the maturation stadiums, gonadossomatic relationship, degrees of accumulated fat, corporal condition, fecundity and spawning type. The mean length of first gonad maturation was assessed by a no-linear adjustment. The corporal condition was evaluated by analysis of covariance. The fecundity was estimate by the volumetric method and related to the standard length, to the total weight, to the gonad weight and to the gonadossomatic relationship. In the study of the fish growth, the cohorts’ separation and their mean lengths were obtained using the package MIXDIST and the Bhattacharya method... (Complete abstract click electronic access below)