Como em diversos tumores sólidos, no câncer de cabeça e pescoço (HNSCC) a presença de metástases é um importante fator de mal prognóstico. Até o momento, estudos indicam que, no microambiente inflamatório tumoral, a estimulação com o Fator de Necrose Tumoral Alpha (TNF-?) leva à ativação de diferentes vias moleculares, como a via do Fator Nuclear Kappa-B (NF-kB) e PI3K/AKT, que inibem GSK3? e consequentemente, promovem a estabilização e translocação nuclear de SNAIL e betacatenina. De um modo geral, em diversos tipos de câncer, enquanto beta-catenina tem ação em promover a proliferação celular, membros da família SNAIL são capazes de induzir o processo de transição epitélio-mesenquimal (EMT). Sabe-se que os eventos de EMT estão envolvidos tanto na iniciação de metástases quanto na geração de célulastronco tumorais (CSCs), que por sua vez estão associadas à falha terapêutica e recidiva, devido à características que lhe conferem resistência aos tratamentos convencionais. Ao silenciar a expressão gênica de modo pós-transcricional, microRNAs (miRs) tem sido associados à regulação tanto da EMT quanto da geração de CSCs. Com uso da abordagem de High-Content Screening (HCS, análise celular multiparamétrica quantitativa por microscopia automatizada), buscamos investigar a capacidade de um grupo de 30 miRs humanos, muitos deles envolvidos em vias inflamatórias e na pluripotência, em modular aspectos relacionados a sobrevivência celular e EMT, em uma linhagem celular derivada de HNSCC (FADU) sob estímulo inflamatório. Inicialmente, avaliamos o potencial do TNF-? em modular parâmetros morfométricos, bem como a presença/localização de proteínas relacionadas com a EMT e capacidade migratória. Posteriormente, avaliamos o efeito de moléculas miméticas dos miRs em suprimir ou potencializar a sobrevivência celular e EMT em células estimuladas com TNF-?, seguido da identificação de transcritos alvos preditos (bem como das vias de sinalização enriquecidas para estes alvos) comumente alvejados por grupos de miRs que levaram a alterações multiparamétricas similares. De modo geral, miRs que alvejaram RELA e AKT2/AKT3 foram responsáveis pela redução na proliferação celular e EMT, enquanto o oposto foi observado em miRs que alvejaram GSK3B e ARHGAP5 (inibidor de RhoA). O silenciamento por siRNAs específicos contra RELA e CTNNB1, causou à redução na sobrevivência celular, enquanto que o silenciamento de AKT1 e CTNNB1 levou à redução na expressão proteica de SNAIL/SLUG. Finalmente, o silenciamento de RELA, AKT1, GSK3B e CTNNB1 levou a redução na sobrevivência celular e indução a apoptose mesmo na ausência de estimulação com TNF-?. Como um todo, nós demonstramos que a abordagem de HCS permitiu a identificação de miRs com efeitos fenotípicos similares (no contexto de proliferação e EMT) e que, a predição de alvos compartilhados por estes miRs, levou à identificação de alvos e vias de sinalização relevantes do ponto de vista terapêutico. / Like many solid cancers, in head and neck cancer (HNC) the presence of metastases is an important factor of poor prognosis. To date, studies indicate that, in the tumor inflammatory microenvironment, stimulation with Tumor Necrosis Factor Alpha (TNF-?) leads to the activation of different molecular pathways, such as the Nuclear Factor-Kappa B (NF-kB) and PI3K/AKT pathway, inhibiting GSK3? and the degradation of SNAIL and beta-catenin, stabilizing them promoting their nuclear translocation. In general, in several types of cancer, while beta-catenin acts to promote cell proliferation, members of the SNAIL family induce the epithelial-mesenchymal (EMT) transition process. It is known that EMT events are involved both in the initiation of metastases and generation of cancer stem cells (CSCs), which in turn are associated with therapeutic failure and relapse, due to its properties that confer resistance to conventional treatments. By silencing gene expression in a post-transcriptional fashion, microRNAs (miRs) have been associated with the regulation of both EMT and CSCs generation. Using the HighContent Screening (HCS) approach, we sought to investigate the ability of a group of 30 human miRs, many of them involved in inflammatory pathways and pluripotency, to modulate aspects related to cell survival and EMT, in a HNSCC-derived cell line (FADU) under inflammatory stimuli. Initially, we evaluated the potential of TNF-? in modulating morphometric parameters, as well as the presence/location of EMT-related proteins and migratory capacity. Subsequently, we evaluated the effect of miRs mimetic molecules on suppressing or potentiating cell survival and EMT in TNF-?-stimulated cells, followed by the identification of predicted target transcripts (as well as signaling pathways enriched for these targets) commonly targeted by groups of miRs that led to similar multiparametric changes. Overall, miRs that targeted RELA and AKT2/AKT3 were responsible for the reduction in cell proliferation and EMT, while the opposite was observed in miRs that targeted GSK3B and ARHGAP5 (RhoA inhibitor). Gene silencing by specific siRNAs against RELA and CTNNB1 caused a reduction in cell survival, while silencing of AKT1 and CTNNB1 led to reduced protein expression of SNAIL/SLUG. Finally, the silencing of RELA, AKT1, GSK3B and CTNNB1 led to a reduction in cell survival and induction of apoptosis even in the absence of TNF-? stimulation. As a whole, we demonstrated that the HCS approach allowed the identification of miRs with similar phenotypic effects (in the context of proliferation and EMT) and that the prediction of targets shared by these miRs led to the identification of relevant targets and signaling pathways from the therapeutic point of view.

Le cytosquelette d'actine est une structure dynamique capitale pour la cellule, qui intervient dans les processus de signalisation et génère des forces mécaniques pour compléter des fonctions aussi diverses que l'adhésion, la migration, la division ou la différenciation. Les protéines qui régulent cette structure sont capables de moduler ces fonctions. J'ai identifié une nouvelle famille de protéines régulatrices de l'actine, les protéines Refilines (RefilineA et RefilineB), dont l'expression est corrélée avec l'engagement des cellules dans des programmes de différenciation. La RefilineA est induite lors de la différenciation des cellules précurseurs neurales multipotentes en cellules progénitrices gliales. La RefilineB est stabilisée dans les cellules épithéliales lors de la transition épithélio-mésenchymateuse (TEM) induite par le TGF-β. Dans ces cellules, les Refilines agissent en se complexant à la FilamineA, une protéine qui se lie aux filaments d'actine et forme le maillage. Des syndromes génétiques de mutations sur le gène de la FilamineA entrainent d'importants défauts développementaux, cependant la fonction précise de la protéine reste à ce jour obscure. Le complexe Refiline/FilamineA induit la formation de câbles d'actine et génère également une nouvelle structure d'actine périnucléaire appelée coiffe d'actine (« actin cap ») ou « ligne TAN» qui s'ancre à l'enveloppe nucléaire pour réguler les mouvements et la morphologie du noyau. Les Refilines sont les seules protéines identifiées à ce jour capables de catalyser la formation de structures périnucléaires d'actine. Ces résultats ouvrent donc de nouvelles perspectives pour appréhender les fonctions de la FilamineA ainsi que la biologie et les fonctions des structures périnucléaires d'actine. / The actin cytoskeleton is a highly dynamic structure involved in cell signaling and that creates mechanical force for the completion of diverse functions such as adhesion, migration, division or differentiation. Proteins that regulate this structure can modulate its function. We identified a new protein family that regulates the actin cytoskeleton, Refilin proteins (RefilinA and RefilinB), and whose expression correlates with differentiation switches. RefilinA is induced during differentiation of neural multipotent precursors into glial progenitors, while RefilinB is stabilized in epithelial cells during epithelial-mesenchymal transition (EMT) induced by TGF-β. In cells, Refilins interact with FilaminA, a protein that binds actin filaments to organize them into a network. Genetic syndromes where the FilaminA gene is mutated lead to important developmental defects, The Refilin/FilaminA complex generates actin cables as well as a new perinuclear structure called « actin cap » or «TAN line» that interacts with the nuclear envelope to regulate nuclear movement and shape. Refilin proteins are the only proteins identified so far that induce the formation of perinuclear actin structures. These results open up new perspective for the understanding of FilaminA's function as well as for the biology and functions of perinuclear actin structures.

Epithelial to Mesenchymal Transition (EMT) is a dynamic process by which a distinct change in the phenotype and function of epithelial cells render them as mesenchymal cells. Characteristics of mesenchymal cells include the ability to invade, increased migratory kinetics and heightened resistance to apoptosis. Therefore, there is a strong need to fully understand the mechanism for the induction of EMT in pathological conditions such as carcinoma progression. Recent advances highlight two pivotal contributors, soluble growth factor (gf) signals, and mechanical signals, in the process. However, to date, no clear mechanism exists linking the two in epithelial transdifferentiation. Transforming Growth Factor-β1 (TGF-β1), a gf known to induce EMT in breast cancer formation, induces EMT on rigid surfaces and apoptosis on compliant surfaces. It is our belief that a combination of mechanical signals, gf signals, and the type of extracellular matrix (ECM) proteins assembled by cells together drive the process of EMT. Here we investigated the role of the ECM protein fibronectin (FN) in EMT. Upon assembly into elastic, insoluble fibrils through cell-generated forces which become larger on stiffer surfaces, FN is able to serve as a gf delivery system. We examined the following hypothesis: Increased tissue stiffness drives FN assembly, which exposes cryptic binding sites for various gfs, such as TGF-β1, and creates a high concentration of these gfs at the cell surface, which in turn drives EMT. In this project we investigated three aims: (1) evaluate the effect of inhibiting FN fibrillogenesis and gf localization on TGF-β1-induced EMT, (2) assess the effect of TGF-β1 concentration on spatial patterning of ECM dynamics, cell phenotype and adherens junctional force, and (3) probe the role of the FN matrix in TGF-β1-induced spatial patterning of EMT. Results showed that both inhibition of FN fibril assembly and blocking the gf binding site on fibrils significantly attenuated the downstream effects of EMT. In microcontact patterns of epithelial colonies, increasing gf concentration led to spatial patterning of FN fibrils, cell phenotype and cell-cell junctional force. Elimination of FN fibrils effectively attenuated TGF-β1-induced spatial patterning. The knowledge acquired through these studies serves as an addition to an increasingly important body of work aimed at elucidating how physical changes within the microenvironment regulate physiology and pathology. By establishing a novel mechanism by which gf signaling induces EMT through interaction with the extracellular matrix, this research serves to combat the development and initiation of pathological phenomena, such as metastasis.

Epithelial-mesenchymal transition (EMT) regulates the cellular processes of migration, growth, and proliferation - as well as the collective cellular process of tissue remodeling - in response to mechanical and chemical stimuli in the cellular microenvironment. Cells of the epithelium form cell-cell junctions with adjacent cells to function as a barrier between the body and its environment. By distributing localized stress throughout the tissue, this mechanical coupling between cells maintains tensional homeostasis in epithelial tissue structures and provides positional information for regulating cellular processes. Whereas in vitro and in vivo models fail to capture the complex interconnectedness of EMT-associated signaling networks, previous computational models have succinctly reproduced components of the EMT program. In this work, we have developed a computational framework to evaluate the mechanochemical signaling dynamics of EMT at the molecular, cellular, and tissue scale. First, we established a model of cell-matrix and cell-cell feedback for predicting mechanical force distributions within an epithelial monolayer. These findings suggest that tensional homeostasis is the result of cytoskeletal stress distribution across cell-cell junctions, which organizes otherwise migratory cells into a stable epithelial monolayer. However, differences in phenotype-specific cell characteristics led to discrepancies in the experimental and computational observations. To better understand the role of mechanical cell-cell feedback in regulating EMT-dependent cellular processes, we introduce an EMT gene regulatory network of key epithelial and mesenchymal markers, E-cadherin and N-cadherin, coupled to a mechanically-sensitive intracellular signaling cascade. Together these signaling networks integrate mechanical cell-cell feedback with EMT-associated gene regulation. Using this approach, we demonstrate that the phenotype-specific properties collectively account for discrepancies in the computational and experimental observations. Additionally, mechanical cell-cell feedback suppresses the EMT program, which is reflected in the gene expression of the heterogeneous cell population. Together, these findings advance our understanding of the complex interplay in cell-cell and cell-matrix feedback during EMT of both normal physiological processes as well as disease progression.

Notch signaling plays a key role in development, tissue homeostasis, and cancer. High expression levels of Notch signaling components are associated with aggressive disease and poor patient prognosis in breast cancer. Mesenchymal‐epithelial transition factor (MET) is a receptor tyrosine kinase with an established prognostic significance correlating with poor disease outcome in breast cancer patients as a result of high metastatic rate. We performed expression array analysis to identify candidate Notch target genes; we identified and validated MET as a target of NOTCH1 signaling in breast cancer. We found that NOTCH1 knockdown significantly reduces MET promoter activity, as well as expression levels of MET transcript and protein. The mechanism of NOTCH1 regulation of MET expression will be the focus of future work. To further identify candidate target genes of NOTCH1 signaling, we generated and validated a NOTCH1 antibody for use in chromatin immunoprecipitation experiments.

Notch signaling plays a key role in development, tissue homeostasis, and cancer. High expression levels of Notch signaling components are associated with aggressive disease and poor patient prognosis in breast cancer. Mesenchymal‐epithelial transition factor (MET) is a receptor tyrosine kinase with an established prognostic significance correlating with poor disease outcome in breast cancer patients as a result of high metastatic rate. We performed expression array analysis to identify candidate Notch target genes; we identified and validated MET as a target of NOTCH1 signaling in breast cancer. We found that NOTCH1 knockdown significantly reduces MET promoter activity, as well as expression levels of MET transcript and protein. The mechanism of NOTCH1 regulation of MET expression will be the focus of future work. To further identify candidate target genes of NOTCH1 signaling, we generated and validated a NOTCH1 antibody for use in chromatin immunoprecipitation experiments.

El mal pronòstic en una neoplàsia epitelial està associada a l'adquisició de característiques mòbils o invasives per part de les cèl·lules canceroses. Aquesta transformació morfològica es denomina transició epiteli-mesènquima (TEM). Snail és un factor de transcripció implicat en aquest procés, responsable de reprimir l'expressió de l'E-cadherina. Aquest treball demostra que Snail té la capacitat de reprimir l'expressió de MUC1 i VDR a través de la seva unió directa a caixes de reconeixement situades en els diferents promotors proximals. A més, la sobreexpressió d'Snail en diverses línies cel·lulars provoca un augment dels nivells d'ARNm de ZEB1 i un increment de l'activitat del seu promotor. L'activitat del promotor mínim d'Snail i els seus nivells d'ARNm depenen de la senyalització d'ERK. Finalment, hem demostrat que Snail i WT1, un regulador positiu de l'expressió de l'E-cadherina, competeixen per unir-se al promotor de l'E-cadherina i regular la seva transcripció. / The poor prognosis in epithelial neoplasia is associated with the acquisition of motile or invasive properties by the cancerous cells. This morphological transformation is often referred to as epithelial to mesenchymal transition (EMT). The Snail transcription factor is involved in this process by repressing the expression of E-cadherin. In this study we demonstrate the capacity of Snail to repress both MUC1 and VDR transcription by direct binding to specific sequences within their proximal promoter. Moreover, Snail overexpression in several cell lines induces ZEB1 mRNA and increases its promoter activity. The activity of the Snail minimal promoter is dependent on the ERK signaling pathway. Finally, we have demonstrated that Snail and WT1, a positive regulator of E-cadherin expression, compete for the binding to the E-cadherin promoter in order to regulate its transcription.

Η επιθηλιακή προς μεσεγχυματική μετατροπή (EMT – epithelial to mesenchymal transition) είναι ένας τύπος επιθηλιακής πλαστικότητας που χαρακτηρίζεται από μακράς διάρκειας φαινοτυπικές και μοριακές αλλαγές στο επιθηλιακό κύτταρο ως αποτέλεσμα μιας διαδικασίας διαφοροποίησης προς κύτταρο μεσεγχυματικού τύπου. Η μοριακή αυτή διεργασία φαίνεται πως είναι θεμελιώδης κατά την μετάσταση επιθηλιακών καρκίνων και αποσκοπεί στην απόκτηση από τα καρκινικά κύτταρα φαινοτυπικών χαρακτήρων που τους δίνουν την δυνατότητα διείσδυσης στους ιστούς. Το ΕΜΤ, εκτός από την μετάσταση, αποτελεί βασική διεργασία τόσο στην εμβρυική ανάπτυξη όσο και στις παθολογικές καταστάσεις της φλεγμονής και της επούλωσης. Στόχος της παρούσας εργασίας είναι μια πλοήγηση μέσα από την βιβλιογραφία που αφορά το φαινόμενο ΕΜΤ και τις επιμέρους διεργασίες που το πλαισιώνουν. Στην πρώτη ενότητα θα γίνει παρουσίαση των μορίων που αναλαμβάνουν τον ρόλο της σηματοδότησης του φαινομένου το οποίο στη συνέχεια εξελίσσεται μέσα από την ενεργοποίηση δεδαλώδων σηματοδοτικών μονοπατιών. Θα παρακολουθήσουμε ακόμα την μετάδοση του σήματος μέσω των κομβικών μορίων αυτών των μονοπατιών ως τον πυρήνα όπου το σήμα απαρτιώνεται αλληλεπιδρώντας με μεταγραφικούς παράγοντες που ρυθμίζουν την έκφραση πρωτεϊνών σχετιζόμενων με την μετατροπή του επιθηλιακού κυττάρου. Στην δεύτερη ενότητα της εργασίας θα γίνει αναφορά στις δομικές και λειτουργικές αλλάγές του επιθηλιακού κυττάρου που του εξασφαλίζουν την μεταναστευτική δυναμική. Πιο συγκεκριμένα θα παρακολουθήσουμε πως το επιθηλιακό κύτταρο χάνει τη συνοχή του με το ‘περιβάλλον’ του εκφεύγοντας ταυτόχρονα της απόπτωσης. Επιπλέον θα εξετάσουμε την αναδιαμόρφωση του κυτταροσκελετού και την έκφραση νέων πρωτεϊνών με σπουδαία συμμετοχή στο φαινόμενο. Τέλος θα γίνει αναφορά στην φαινοτυπική μετατροπή που επιφέρει το φαινόμενο ΕΜΤ στο στρώμα που περιβάλλει τον καρκίνο και πως αυτή με τη σειρά της συνεισφέρει στα δίαφορα μοριακά γεγονότα που συνιστούν το φαινόμενο. Η μετάσταση είναι μια ραγδαία εξέλιξη στην αδυσώπητη πορεία του καρκίνου. Η κατανόησή της λοιπόν σε μοριακό επίπεδο είναι ζήτημα νευραλγικής σημασίας που ξεφεύγει απο τα πλαίσια του απλού ακαδημαϊκού ενδιαφέροντος. Ο χειρισμός των μοριακών μηχανισμών για τον έλεγχο της μετάστασης θα μπορεί να αποτελέσει το στοίχημα για την ΄΄μοριακή χειρουργική΄΄ του μέλλοντος. / Epithelial to mesenchymal transition (EMT) is a type of epithelial cell plasticity which is characterized by long lasting phenotypic and molecular modifications of the epithelial cell as a result of a transforming procedure leading to a cell of mesenchymal type. This molecular procedure seems to be pivotal for the metastasis of epithelial cancers and its attribution to the epithelial cells is the gain of phenotypic characters which enable them to invade the tissues. EMT apart from metastasis is also an important molecular phenomenon during embryogenesis and inflammation. The target of this project is a scan through the recent bibliography about EMT. Specifically the project’s first part is going to present the molecules that induce the phenomenon followed by the activation of the complicated signaling pathways of the cell. These paths which are consisted of nodal molecules lead the sing towards the nucleus where it interacts with transcription factors. The conclusion is the regulation of the transcription of some important genes for the phenotypic alteration of the epithelial cell to a cell with mesenchymal characters. The next subject with which this project is going to deal is the thorough presentation of the alterations of the epithelial cell. These include basically the abolishment of the adherence junctions and the reconstruction of the cytoskeleton with the formation of new structures such as filopodia and lamellipodia which endows the cell with the potential of kinesis. Additionally the transformed cells produce new proteins like N-cadherin and vimentin. They also modify the production of a family of proteins with unique importance for the EMT, the so called metalloproteinases. Moreover the cell which has gone through the impact of EMT phenomenon has the ability to induce neovascular formation and at the same time acquires molecular mechanisms to avoid the programmed cell death, known as apoptosis. Finally the transformed epithelial cell implies a phenotypic modification even to the surrounding stroma of the cancer with which the epithelial cells constitute a functional harmonic unit. From one hand the modification of the stroma activates it and the activated stroma from the other hand implies an intense impact to the most molecular subjects that are related to EMT. Metastasis is a rapid development in the ominous course of cancer. The effort to deceive the molecular basis of this phenomenon is not a subject of simple academic interest since the exploit of the molecular mechanisms so as to gain the control of metastasis could be the ‘bet’ for a futuristic ‘molecular surgery’.

Το φαινόμενο της επιθηλιακής προς μεσεγχυματική μετατροπή είναι μια διδικασία που λαμβάνει χώρα κατά την εμβρυογένση και αφορά στη μετατροπή του φαινοτύπου των επιθηλιακών κυττάρων σε μεσεγχυματικά.Το φαινόμενο αυτό βρέθηκε ότι επανενεργοποιείται κατά τη διαδικασία της καρκινογένεσης και μετέχει στην ανάπτυξη των μεταστάσεων.Στην ανάπτυξη αυτού του φαινομένου συμβάλει η ενεργοποίηση μια σειρά απο σηματοδοτικά μονοπάτια / Epithelial to mesenchymal transition in carcinogenesis and metastasis.

<p>Embryonic development occurs with precisely timed morphogenetic cell movements directed by complex gene regulation. In this orchestrated series of events, some epithelial cells undergo extensive changes to become free moving mesenchymal cells. The transformation resulting in an epithelial cell becoming mesenchymal is called an epithelial to mesenchymal transition (EMT), a dramatic cell biological change that occurs throughout development, tissue repair, and disease. Extensive <italic>in vitro</italic> research has identified many EMT regulators. However, most <italic>in vitro</italic> studies often reduce the complicated phenotypic change to a binary choice between successful and failed EMT. Research utilizing models has generally been limited to a single aspect of EMT without considering the total transformation. Fully understanding EMT requires experiments that perturb the system via multiple channels and observe several individual components from the series of cellular changes, which together make a successful EMT.</p><p>In this study, we have taken a novel approach to understand how the sea urchin embryo coordinates an EMT. We use systems level methods to describe the dynamics of EMT by directly observing phenotypic changes created by shifting transcriptional network states over the course of primary mesenchyme cell (PMC) ingression, a classic example of developmental EMT. We systematically knocked down each transcription factor in the sea urchin's PMC gene regulatory network (GRN). In the first assay, one fluorescently labeled knockdown PMC precursor was transplanted onto an unperturbed host embryo and we observed the resulting phenotype <italic>in vivo</italic> from before ingression until two hours post ingression using time-lapse fluorescent microscopy. Movies were projected for computational analyses of several phenotypic changes relevant to EMT: apical constriction, apical basal polarity, motility, and de-adhesion. </p><p>A separate assay scored each transcription factor for its requirement in basement membrane invasion during EMT. Again, each transcription factor was knocked down one by one and embryos were immuno-stained for laminin, a major component of basement membrane, and scored on the presence or absence of a laminin hole at the presumptive entry site of ingression. </p><p>The measured results of both assays were subjected to rigorous unsupervised data analyses: principal component analysis, emergent self-organizing map data mining, and hierarchical clustering. This analytical approach objectively compared the various phenotypes that resulted from each knockdown. In most cases, perturbation of any one transcription factor resulted in a unique phenotype that shared characteristics with its upstream regulators and downstream targets. For example, Erg is a known regulator of both Hex and FoxN2/3 and all three shared a motility phenotype; additionally, Hex and Erg both regulated apical constriction but Hex additionally affected invasion and FoxN2/3 was the lone regulator of cell polarity. Measured phenotypic changes in conjunction with known GRN relationships were used to construct five unique subcircuits of the GRN that described how dynamic regulatory network states control five individual components of EMT: apical constriction, apical basal polarity, motility, de-adhesion, and invasion. The five subcircuits were built on top of the GRN and integrated existing fate specification control with the morphogenetic EMT control.</p><p>Early in the EMT study, we discovered one PMC gene, Erg, was alternatively spliced. We identified 22 splice variants of Erg that are expressed during ingression. Our Erg knockdown targeted the 5'UTR, present in all spliceoforms; therefore, the knockdown uniformly perturbed all native Erg transcripts (&#8721;Erg). Specific function was demonstrated for the two most abundant spliceoforms, Erg-0 and Erg-4, by knockdown of &#8721;Erg and mRNA rescue with a single spliceoform; the mRNA expression constructs contained no 5'UTR and were not affected by the knockdown. Different molecular phenotypes were observed, and both spliceoforms targeted Tbr, Tel, and FoxO, only Erg-0 targeted FoxN2/3 and only Erg-4 targeted Hex. Neither targeted Tgif, which was regulated by &#8721;Erg knockdown sans rescue. Our results suggest the embryo employs a minimum of three unique roles in the GRN for alternative splicing of Erg. </p><p>Overall, these experiments increase the completeness and descriptive power of the GRN with two additional levels of complexity. We uncovered five sub-circuits of EMT control, which integrated into the GRN provide a novel view of how a complex morphogenetic movement is controlled by the embryo. We also described a new functional role for alternative splicing in the GRN where the transcriptional targets for two splice variants of Erg are unique subsets of the total set of &#8721;Erg targets.</p> / Dissertation