Throughout the study of polymeric Langmuir monolayers at the air/water (A/W) interface, the Wilhelmy plate and Langmuir-Blodgett (LB) techniques along with Brewster angle microscopy (BAM) have been identified as key methods for acquiring structural, thermodynamic, rheological and morphological information. These techniques along with surface light scattering (SLS), a method for probing a monolayer's dynamic dilational rheological properties, will be used to characterize homopolymers, poly(ethylene oxide) (PEO) and poly(ethylene glycol) (PEG), and a new class of novel polymeric surfactants, telechelic (POSS-PEG-POSS) and hemi-telechelic (POSS-PEG) polyhedral oligomeric silsesquioxane (POSS) derivatives of PEG. PEO with number average molar mass, Mn > ~ 18 kg·mol-1 form stable spread Langmuir films at the A/W interface, while oligomeric PEG have ï -A isotherms that deviate from high molar mass PEO. Nonetheless, SLS reveals that the dynamic dilational viscoelastic properties of any Mn PEG(PEO) only depend on ï and not Mn. Likewise, POSS-PEG-POSS telechelics exhibit molar mass dependent ï -A isotherms, where low ï regimes (ï < 1 mN·m-1) have PEG-like behavior, but high ï regimes were dominated by POSS-POSS interactions. SLS studies reveal that the dynamic dilational moduli of POSS-PEG-POSS are greater than either PEO or an analogous POSS compound, trisilanolcyclohexyl-POSS. The ability to control rheological properties and the hydrophilic-lipophilic balance even allows one POSS-PEG-POSS (PEG Mn = 1 kg·mol-1) to form Y-type LB-multilayer films. For POSS-PEG systems, comparisons at comparable POSS:PEG ratios reveal short PEG chains (PEG Mn ~ 0.5 kg·mol-1) yield similar viscoelastic properties as POSS-PEG-POSS (PEG Mn ~ 1 kg·mol-1), while longer PEG chains (PEG Mn ~ 2 kg·mol-1) yield lower modulus films than comparable POSS-PEG-POSS. These differences are attributed to brush-like PEG conformations in short POSS-PEG versus mushroom-like PEG conformations in long POSS-PEG at the A/W interface. These results provide insight for designing PEG-based amphiphilic nanoparticles with controlled interfacial rheology. / Ph. D.

Das Cu-Cu-Bonden ist eine vielversprechende lötfreie Fine-Pitch-Verbindungstechnologie für die 2,5D- und 3D-Systemintegration. Diese Bondtechnologie wurde in den letzten Jahren intensiv untersucht und wird derzeit für miniaturisierte mikroelektronische Produkte eingesetzt. Allerdings, stellt das Cu‑Cu-Bonden zum einen sehr hohe Anforderungen an die Oberflächenplanarität und -reinheit, und zum anderen sollten die Bondpartner frei von Oxiden sein. Oxidiertes Cu erfordert erhöhte Bondparameter, um die Oxidschicht zu durchbrechen und zuverlässige Cu-Cu-Verbindungen zu erzielen. Diese Bondbedingungen sind für viele sensible Bauelemente nicht geeignet. Aus diesem Grund sollten alternative Technologien mit einer einfachen Technik zum Schutz von Cu vor Oxidation gefunden werden. In dieser Arbeit werden selbstorganisierte Monolagen (SAMs) für den Cu-Oxidationsschutz und die Verbesserung der Cu-Cu-Thermokompression- (TC) und Ultraschall- (US) Flip-Chip-Bondtechnologien untersucht. Die Experimente werden an Si-Chips mit galvanisch aufgebrachten Cu-Microbumps und Cu-Schichten durchgeführt. Die Arbeit beinhaltet die umfassende Charakterisierung der SAM für den Cu-Schutz, die Bewertung der technologischen Parameter für das TC- und US-Flip-Chip-Bonden sowie die Charakterisierung der Cu-Cu-Bondqualität (Scherfestigkeitstests, Bruchflächen- und Mikrostrukturanalysen). Eine Lagerung bei tiefen Temperaturen (bei ‑18 °C und ‑40 °C) bestätigte die langanhaltende Schutzwirkung der kurzkettigen SAMs für das galvanisch abgeschiedene Cu ohne chemisch-mechanische Politur. Der Einfluss der Tieftemperaturlagerung an Luft und der thermischen SAM-Desorption in einer Inertgasatmosphäre auf die TC-Verbindungsqualität wird im Detail analysiert. Die Idee, mit Hilfe der US-Leistung SAM mechanisch zu entfernen und gleichzeitig das US-Flip-Chip-Bonden zu starten, wurde in der Literatur bisher nicht systematisch untersucht. Die Methode ermöglicht kurze Bondzeiten, niedrige Bondtemperaturen und das Bonden an Umgebungsluft. Sowohl beim TC- als auch beim US-Flip-Chip-Bonden zeigt es sich, dass die Scherfestigkeit bei den Proben mit SAM-Passivierung um ca. 30 % höher ist als bei unbeschichteten Proben. Das Vorhandensein von Si- und Ti-Bruchflächen nach den Scherfestigkeitstests ist für die Proben mit der SAM-Passivierung typisch, was auf eine höhere Festigkeit solcher Verbindungen im Vergleich zu ungeschützten Proben schließen lässt. Die Transmissionselektronenmikroskopie (TEM) zeigt keine SAM-Spuren im zentralen Bereich der Cu-Cu-Grenzfläche nach dem US-Flip-Chip-Bonden. Die Ergebnisse dieser Arbeit zeigen die Verbesserung der Bondqualität durch den Einsatz von SAM zum Schutz des Cu vor Oxidation im Vergleich zum üblicherweise angewandten Cu-Vorätzen. Das gefundene technologische Prozessfenster für das US-Flip-Chip-Bonden an Luft bietet eine hohe Bondqualität bei 90 °C und 150 °C, bei 180 MPa, bei einer Bonddauer von 1 s an. Die in dieser Arbeit gewonnenen Erkenntnisse sind ein wichtiger Beitrag zum Verständnis des SAM-Einflusses auf Chips mit galvanischen Cu-Microbumps, bzw. Cu-Schichten, und zur weiteren Anwendung der Cu-Cu-Fine-Pitch-Bondtechnologie in der Mikroelektronik. / Cu-Cu bonding is one of the most promising fine-pitch interconnect technologies with solder elimination for 2.5D and 3D system integration. This bonding technology has been intensively investigated in the last years and is currently in application for miniaturized microelectronics products. However, Cu-Cu bonding has very high demands on the sur-face planarity and purity, and the bonding partners should be oxide-free. Oxidized Cu requires elevated bonding parameters in order to break through the oxide layer and achieve reliable Cu-Cu interconnects. Those bonding conditions are undesirable for many devices (e.g. due to the temperature/pressure sensitivity). Therefore, alternative technologies with a simple technique for Cu protection from oxidation are required. Self-assembled monolayers (SAMs) are proposed for the Cu protection and the improvement of the Cu-Cu thermocompression (TC) and ultrasonic (US) flip-chip bonding technologies in this thesis. The experiments were carried out on Si dies with electroplated Cu microbumps and Cu layers. The thesis comprises the comprehensive characterization of the SAM for Cu protection, evaluation of technological parameters for TC and US flip-chip bonding as well as characterization of the Cu-Cu bonding quality (shear strength tests, fracture surface and microstructure analyses). The storage at low temperatures (at ‑18 °C and ‑40 °C) confirmed the prolonged protective effect of the short-chain SAMs for the electroplated Cu without chemical-mechanical polishing. The influence of the low-temperature storage in air and the thermal SAM desorption in an inert gas atmosphere on the TC bonding quality was analyzed in detail. The approach of using US power to mechanically remove SAM and simultaneously start the US flip-chip bonding has not been systematically investigated before. The method provides the benefit of short bonding time, low bonding temperature and bonding in ambient air. Both the TC and US flip-chip bonding results featured the shear strength that is approximately 30 % higher for the samples with SAM passivation in comparison to the uncoated samples. The presence of Si and Ti fracture surfaces after the shear strength tests is typical for the samples with the SAM passivation, which suggests a higher strength of such interconnects in comparison to the uncoated samples. The transmission electron microscopy (TEM) indicated no SAM traces at the central region of the Cu-Cu bonding interface after the US flip-chip bonding. The results of this thesis show the improvement of the bonding quality caused by the application of SAM for Cu protection from oxidation in comparison to the commonly applied Cu pre-treatments. The found technological process window for the US flip-chip bonding in air offers high bonding quality at 90 °C and 150 °C, at 180 MPa, for the bonding duration of 1 s. The knowledge gained in this thesis is an important contribution to the understanding of the SAM performance on chips with electroplated Cu microbumps/layers and further application of the Cu-Cu fine-pitch bonding technology for microelectronic devices.

<p dir="ltr">Creating synthetic materials that mimic native tissue is an overarching goal in tissue engineering and regenerative medicine. It is essential to embed molecular-resolution chemical patterning into soft synthetic polymers to achieve this. Even though fundamental principles from surface science offer broad control over the position of even individual atoms on a pristine surface, this degree of control remains restricted to two-dimensional hard crystalline materials under particular environmental conditions that are incompatible with life. Therefore, developing strategies to translate these principles into soft, amorphous interfaces is challenging<i>. </i>This will lead to the development of <i>nanopatterned soft materials</i> that closely resemble native tissue. Popular approaches in materials science fail to produce such <i>high-resolution polymers</i>.</p><p dir="ltr">Hydrogels are soft, three-dimensional networks that can hold large amounts of an aqueous solvent while retaining their structure. These materials have applicability in contexts where polymer materials must interface with biology (e.g., drug delivery, biosensing, tissue engineering, and regenerative medicine) as one can easily tune their mechanical, chemical, and biological properties. However, the main limitation of these materials is that the hydrogel network is amorphous, with substantial variability in mesh size up to the micron-scale. This limits their application when highly structured interactions with biomolecules, typically at sub-10 nm scales, are required. This dissertation shows a strategy to generate 1 nm-wide ordered patterns of functional groups on polyacrylamide (PAAm) hydrogel surfaces. When 1 nm-wide linear patterns are transferred to PAAm, patterning specific biological polyelectrolyte interactions at the hydrogel surface is possible. This represents a first step towards developing robust methods for nanopattern hydrogels at the proposed resolution.</p><p dir="ltr">One last subject this thesis dissertation seeks to explore is the extension of chemical patterning to a dynamic range of scales to adapt this technological advancement to industrial setups. Enabling the practical applicability of nanopatterned soft materials in macroscopic contexts (e.g., synthetic tissue development, wearable electronics, etc). However, extending this degree of control to a high throughput process applicable to heterogeneous interfaces remains a challenge. We demonstrated a scalable inkjet printing method to produce functional hierarchical patterns on two-dimensional crystalline substrates, which can be transferred to hydrogels. Finally, we studied the specific biosensing capabilities of these micro-patterned surfaces.</p>

Exploring new technologies that can meet the world’s energy demands in an efficient and clean manner is critically important due to the depletion of natural resources and environmental concerns. Dye-sensitized solar cells (DSSCs) are low-cost and clean technology options that use solar energy efficiently and are being intensively studied. How to further reduce the cost of this technology while enhancing device performance is one of the demanding issues for large scale application and commercialization of DSSCs. In this research dissertation, four main contributions are made in this regard with the motivation to reduce further cost of DSSC technology. Firstly, ~10% efficiencies were achieved after developing understanding of key concepts and procedures involved in DSSCs fabrication. These efficiencies were achieved after step-by-step modifications in the DSSC design. Secondly, carbon nanotubes (CNTs) were successfully employed as an alternative to Pt in the counter electrodes of DSSCs. DSSCs fabricated with CNTs were ~86% as efficient as Pt-based cells. Non-aligned CNTs were successfully grown using four different CVD methods and finally, multi-walled vertically aligned CNTs (MW-VACNTs) were synthesized using water-assisted chemical vapor deposition (WA-CVD). Thirdly, carbon derived from pyrolysis of nanocrystalline cellulose (NCC) was successfully employed in counter electrodes of DSSCs instead of Pt. DSSCs with NCC were ~58% as efficient as Pt-based DSSCs. Fourthly, novel organic metal-free dyes were designed and employed instead of commonly used Ru-based dyes. DSSCs with these novel sensitizers were ~62% as efficient as those using the conventional Ru-based dyes. Characterization techniques including current-voltage measurements, scanning electron microscopy (SEM), electrochemical impedance spectroscopy (EIS), cyclic voltammetery (CV), thermogravimetric analysis (TGA), small angle x-ray scattering (SAXS), atomic force microscopy (AFM) and x-ray photoelectron spectroscopy (XPS) were used.

<p>Oligo(phenyleneethynylene) (OPE) molecules are a class of fully conjugated aromatic molecules, that attract attention for their application as “molecular wires” in molecular electronic devices. In this thesis work, self-assembled monolayers (SAMs) formed from a variety of OPE derivatives have been studied. The chemical properties, structure, and packing density of the SAMs have been characterized utilizing techniques such as high-resolution X-ray photoemission spectroscopy (HRXPS), near-edge X-ray absorption fine structure spectroscopy (NEXAFS), Infrared reflection absorption spectroscopy (IRRAS), contact angle measurements, and atomic force microscopy (AFM).</p><p>In a first study, three OPE-derivatives, with benzene, naphthalene and anthracene, respectively, inserted into the backbone, and an acetyl-protected thiophenol binding group were found to form SAMs on Au(111) substrates with lower molecular surface densities and larger molecular inclination as the lateral π-system increases.</p><p>In a second study, porphyrin was introduced as the end group to a wire-like molecule such as OPE. The purpose was to obtain well-organized and functionalized surfaces with optical and redox properties. Three porphyrin-functionalized OPEs had different binding groups, an acetyl-protected thiophenol, a benzylic thiol, and a trimethylsilylethynylene group, and were found to form SAMs on gold surfaces with difference in structure and degree of order. The molecules with the acetyl-protected thiophenol binding group were found to form a high quality SAM compared to the other two. This SAM exhibits a well-ordered and densely packed layer.</p><p>This study gives rise to a better understanding of SAM formation of OPE derivatives, and will form a base for further investigations of charge transport properties of these molecular films, which is of interest for applications in molecular electronic devices.</p>

Les propriétés d'une nouvelle classe de chimie de surface basée sur les monocouches auto-assemblées de liquides ioniques (ILs-SAMs), ont été étudiées pour une utilisation dans la construction de biocapteurs basés sur la résonance des plasmons de surface (SPR). Les biocapteurs sont utiles pour détecter des biomolécules spécifiques dans une matrice biologique complexe. Cependant, le signal analytique de la biomolécule spécifique peut être masqué par l’adsorption non spécifique de la matrice biologique, produisant une réponse faussement positive. Par ailleurs, l'activité des récepteurs moléculaires est souvent réduite par des techniques d'immobilisation chimique. Ainsi, il est essentiel de déterminer une surface idéale pour la préparation de biocapteurs. Les liquides ioniques sont bien connus pour favoriser l'activité des récepteurs moléculaires et cette étude enquête si cette propriété importante peut se traduire sur des capteurs SPR. Différents liquides ioniques ont été utilisés pour former des monocouches auto-assemblées sur une surface d'or. Les ILs-SAMs sont tous basés sur les sels de mercapto-(chaîne alkyle)nCH2-méthylimidazolium avec différentes chaînes alkyles (n = 3, 6, 9, 12) et différents contre-anions (Br-, BF4-, PF6-, NTf2-). Des études cinétiques de l'adsorption non spécifique de sérum bovin ont été réalisées sur des capteurs SPR avec un instrument construit sur mesure, basé sur l'interrogation des longueurs d’ondes SPR sur un prisme d’inversion d’image (dove). Par la suite, l’anti-IgG de chèvre sélective à l’IgG humain a été utilisé en tant que modèle pour la confection de biocapteurs sur les ILs-SAMs. En solution, il est possible d’effectuer des échanges du contre-anion des liquides ioniques pour un contre-anion de plus en plus hydrophobe. Cependant, l’échange inverse, soit vers des anions de plus en plus hydrophile, s’avère impossible. Toutefois, il a été observé par les travaux présentés dans ce mémoire, que les liquides ioniques immobilisés sur une surface d'or ont la capacité d'échanger leurs contre-anions réversiblement, procurant une méthode simple de moduler leurs propriétés physico-chimiques. Ce phénomène a été observé par la mesure d’angles de contacts et par les techniques spectroscopiques de l’infrarouge moyen (mid-IR), des photoélectrons de rayon-X (XPS) et par la diffusion Raman exaltée par les surfaces (SERS) ii ainsi que par la spectrométrie de masse (MS). La connaissance des propriétés d’échange d’anion est importante pour prédire le comportement de ces surfaces de liquides ioniques dans les tampons et fluides biologiques. / The properties of a novel class of surface chemistry based on ionic liquid self-assembled monolayers (IL-SAM) were investigated for use with surface plasmon resonance (SPR) biosensors. Biosensors are useful to detect specific biomolecules in a complex biological matrix. However, the analytical signal of a specific biomolecule can be masked by nonspecific adsorption of the biological matrix, resulting in a false positive response. Moreover, the activity of molecular receptors is often reduced by current immobilization chemistry. Thus, it is essential to determine an ideal surface for the preparation of biosensors. Ionic liquids are well-known to promote the activity of molecular receptors and this study investigates if this important property translates to SPR sensors. Different ionic liquids were used to form self-assembled monolayers on a gold surface. IL-SAM were based on mercapto(alkyl chain)n methylimidazolium salts with different alkyl chain (n = 3, 6, 9, 12) and counter anions (Br-, BF4-, PF6-, NTf2-). Kinetic studies of the nonspecific adsorption of bovine serum were carried on SPR sensors with a custom built instrument based on wavelength interrogation SPR on a dove prism. Thereafter, anti-goat IgG selective to human IgG was used as a model for biosensor employing ILs-SAM surface chemistry. Exchange of counter anion of ionic liquids was believed impossible for most hydrophobic counter anions. However, it was observed that ionic liquids immobilized on a gold surface have the ability to exchange their counter anions reversibly, allowing a simple method to modulate their physico-chemical properties. This phenomenon was observed by contact angle technique and by attenuated total reflectance mid-infrared (ATR mid-IR), X-ray photoelectron spectroscopy (XPS), surface enhanced raman spectroscopy (SERS) and mass spectrometry (MS). Better understanding of the anion exchange properties is crucial in predicting the behaviour of IL-SAM in presence of biological buffers and fluids.

Il existe une très forte demande en biocapteurs pour la détection d’agents pathogènes dans le domaine environnemental et médical. Dans ce contexte, le contrôle de l’état de surface des biocapteurs joue un rôle crucial. Les monocouches auto-assemblées (Self-Assembled Monolayers, SAMs) permettent de fonctionnaliser de manière homogène et reproductible ces surfaces. Ces SAMs sont généralement obtenues à partir d’agents de couplage siliciés à longue chaîne alkyle. Mais, ces composés sont souvent difficiles à synthétiser et à purifier en raison de leurs faibles solubilités dans les solvants organiques. C’est pour cela que nous avons proposé d’introduire une fonction polaire (amide ou urée) au sein de ces films. Ces fonctions permettent également un auto-assemblage des molécules sur le substrat au moyen de liaisons hydrogène entre les molécules. Les nouvelles monocouches fonctionnelles ont été caractérisées entre autres par spectroscopie infrarouge de réflexion-absorption par modulation de polarisation (PM-IRRAS) ce qui a permis d’identifier les différents groupes moléculaires. Ces monocouches ont aussi montré leurs capacités à immobiliser une molécule biologique (Protéine A). / There is an increasing demand for biosensors to detect pathogens in environmental and medical fields. In this context, the control of the surface properties plays an important role. Self-Assembled Monolayers (SAMs) allow to functionalize these surfaces homogeneously and reproducible. SAMs on silicon based surfaces are usually obtained from silylated coupling agents with long alkyl chain. However, these compounds are often difficult to purify owing to their low solubility in organic solvents. That’s why we proposed to introduce a polar function (amide or urea) in the molecular structure. These precursors were also capable of association by H-bonds and offer possibilities to control the organic assembly on the surfaces. The new functional monolayers were characterized by Polarization Modulation Infrared Reflection Adsorption Spectroscopy (PM-IRRAS) and others techniques such as XPS and contact angle in order to identify the different molecular groups on the surface. These functionalized monolayers have also shown their ability to immobilize biomolecules (Protein A).

L'oxydoréduction des monocouches auto-assemblées («Self-assembled monolayers ou SAMs) de ferrocenyldodecanethiolates sur une surface d'or (Fc(CH2)12SAu) dans des solutions aqueuses de n-alkyle sulfate de sodium (6, 8, 10 et 12 atomes de carbone) est étudiée par spectroscopie de résonance des plasmons de surface («Surface Plasmons Resonance ou SPR) couplée avec de la voltampérométrie cyclique (VC). La technique SPR est utilisée pour suivre en temps réel l'adsorption des tensioactifs en fonction du potentiel appliqué. Elle permet de quantifier l'épaisseur et le recouvrement des molécules adsorbées pour déterminer l'organisation des tensioactifs anioniques sur la SAM. La VC est utilisée afin de caractériser l'oxydation du groupement ferrocène en présence des n-alkyle sulfate de sodium qui s'associent à la SAM grâce à l'appariement entre le ferrocénium et le groupement sulfate. Des mélanges binaires d'alkylesulfates de différentes compositions sont utilisés dans le but de déterminer l'organisation induite par une réaction d'oxydoréduction. L'effet de la longueur de la chaîne d'hydrocarbures sur la quantité de tensioactifs anioniques adsorbés ainsi que les affinités relatives d'appariement des anions alkyle sulfate aux ferrocéniums sont rapportés dans ce mémoire. Ces surfaces électrosensibles permettront la détection de molécules amphiphiles et la compréhension du comportement de mélanges binaires de tensioactifs. Ainsi, ces travaux apporteront une avancée sur la modulation électrochimique de l'organisation de matériaux sur des substrats solides basée sur l'appariement d'ions. / The redox-induced pairing from aqueous solution of a homologous series of sodium n-alkyl sulfate (6, 8, 10 and 12 carbon atoms) to self-assembled monolayers (SAMs) of ferrocenyldodecanethiolates on a gold surface (Fc(CH2)12SAu) is investigated by spectroscopy of surface plasmon resonance (SPR) coupled with the cyclic voltammetry (CV). The SPR technique is used to monitor in real time the adsorption of surfactant in function of the applied potential. It quantifies the adsorbed layer thickness and surface coverage to determine the organization of anionic surfactants on SAM. CV is used to characterize the oxidation of ferrocene group in the presence of sodium n-alkyl sulfates that associate with SAM through matching between the ferrocenium and sulfate group. Binary mixtures of alkylesulfates of different compositions are used to determine the structure induced by a redox reaction. The effect of the length of the hydrocarbon chain on the amount of anionic surfactants adsorbed and the relative affinities of matching the ferroceniums alkyl sulfate anions are reported in this thesis. These electrosensitive surfaces allow the detection of amphiphilic molecules and the understanding the behavior of binary mixtures of surfactants. Thus, this work will result in progress on the electrochemical modulation organizing materials on solid substrates based on the ion-pairing.

>Magister Scientiae - MSc / Glucose oxidase (GOx) and horseradish peroxidase (HRP) are important enzymes for the development of amperometric enzyme linked immunosensors. The selectivity of each enzyme towards its analyte deepens its importance in determining the sensitivity of the resultant immunosensor. In designing immunosensors that have customized transducer surfaces, the incorporation with FAD and iron based enzymes ensures that electron kinetics remains optimal for electrochemical measurement. Various different immobilization strategies are used to produce response signals directly proportional to the concentration of analyte with minimal interferences. The combination of self-assembled monolayers and supramolecular chemistry affords stability and simplicity in immunosensor design. In this work, two electrochemical strategies for the detection of human chorionic gonadotropin(hCG) is presented. This involves the modification of a gold surface with a thiolated β-cyclodextrin epichlorohydrin polymer (βCDPSH) to form a supramolecular inclusion complex with ferrocene (Fc)-functionalised carboxymethyl cellulose polymer (CMC). Cyclic voltammetry indicated that ferrocene is in close proximity to the electrode surface due to the supramolecular complex formed with βCDPSH. Furthermore, strategy (a) for the detection of hCG used α-antihCG labelled (HRP) as reporter conjugate. Strategy (b) maintained the CMC bifunctionalised with Fc and recognition antibody for hCG hormone. However, the system was functionalised with a HRP enzyme and detection is done by using GOx reporter conjugates for in situ production of hydrogen peroxide. The reduction of H2O2 was used for the amperometric detection of hCG by applying a potential of 200 mV. The sensitivity and limit of detection of both strategies were calculated from calibration plots. For strategy (a) the LOD was found to be 3.7283 ng/mL corresponding to 33.56 mIU/mL and a sensitivity of 0.0914 nA ng-1 mL-1. The corresponding values for strategy (b) are 700 pg/mL (6.3 mIU/mL) and 0.94 nA ng-1 mL-1.

As ligações de hidrogênio (LH), fundamentais na determinação da estrutura da água, proteínas, etc., são muito importantes no reconhecimento molecular e nos mecanismos de reações enzimáticas. A determinação da energia das LHs intramoleculares em proteínas e intermoleculares entre uma proteína e o solvente água, porque fornece informações sobre a estrutura secundária, terciária e quaternária das proteínas. Um método para quantificar e qualificar as LHs foi desenvolvido utilizando critérios de distância, geométricos e energéticos a partir das trajetórias obtidas por simulações de dinâmica molecular. O método foi testado com o monômero de uma fosfolipase A2 homodimérica, sem atividade catalítica, isolada do veneno da Bothrops asper(BaspMT-II). No dímero, a análise das LHs mostrou que elas são também essenciais na manutenção da estrutura quaternária. Essa análise permitiu identificar movimentos do tipo dobradiça acompanhados da formação transitória, na interface dimérica, de LHs controladas pelo triptofano na posição 77. Esses movimentos podem estar associados à ação danosa às membranas, uma vez que podem promover a inserção da região C-terminal na membrana. Estudos prévios mostraram que o peptídeo sintético (3Y codificado pelos aminoácidos 115-129 da BaspMT-II) apresenta atividade bactericida e citolítica. Um outro peptídeo (3W), mutante de 3Y, no qual três resíduos tirosina são substituidos por triptofano, apresenta um aumento do dano às membranas e do efeito miotóxico. Os mecanismos de ação desses peptídeos e as suas estruturas foram estudados por dinâmica molecular, dicroísmo circular (DC), microscopia de fluorescência e monocamadas de Langmuir (Mlang). As adsorções dos peptídeos em monocamadas de ácido dimiristoil fosfatídico (DMPA) e dimiristoilfosfatidilcolina (DMPC) se processam por mecanismos diferentes ocasionados pelas diferentes naturezas físico-químicas dos resíduos tirosina e triptofano. A microscopia de fluorescência acoplada a Mlang de DMPA com 3W adsorvido mostra um aumento da fluidez da monocamada, enquanto que o 3Y modifica os domínios do DMPA para pequenas estruturas circulares. Foram realizadas simulações dos peptídeos 3Y e 3W em meio aquoso e nas regiões interfaciais água/n-hexano e água/bicamadas de DMPC. Os resultados confirmam os obtidos por Mlang, demonstrando que os peptídeos interagem diferentemente com as membranas por adotar conformações alternativas definidas previamente. Essas conformações, diferentes das observadas em meio aquoso, dependem da natureza da interface. As estruturas encontradas no final das simulaçoes corroboram o mecanismo proposto por Mlang, assim como as estruturas sugeridas por DC. Isso sugere que a atividade biológica reduzida do peptídeo 3Y ocorre porque os seus dois resíduos Leu se adsorvem na interface sem penetrá-la. Ao contrário de 3W, os resíduos carregados do peptídeo 3Y não estão localizados corretamente para promover uma interação suficientemente atrativa para permitir a sua inserção na membrana celular. / Hydrogen bonds (HB) are highly important in the determination of the structure of the water and proteins. They also play a important role in molecular recognition and in enzyme reaction mechanisms. The determination of protein/water intermolecular and protein intramolecular HB energies provide information with respect to the formation and stabilization of secondary, tertiary and quaternary protein structure. A method that quantifies and qualifies the properties of HB was developed using distance, geometric and energy criteria as applied to data obtained from the atomic trajectories generated by molecular dynamics simulations. The method was tested with a monomer of a catalytically inactive homodimeric phospholipase A2 from Bothrops asper(BaspMT-II) venom. HBs at dimmer interface are essential for maintaining the quaternary structure, and are highly conserved during hinge-like movements of the dimmer. HB formed by tryptophan residue at position 77 controls this movement. These motions can be associated to the membrane damaging action since they facilitate the insertion of the C-terminus into the cellular membrane. Previous studies have shown that synthetic peptide (3Y, coding the amino acids 115-129 of BaspMT-II ) presents bactericidal and cytolitic activities. A peptide variant ( 3W ), in which tyrosine residues were substituted by tryptophan residues, presents an enhanced membrane damaging activity increased miotoxic effect. The mechanism of action of the peptides and their structures were studied by molecular dynamics simulations, circular dichroism (CD), fluorescence microscopy and Langmuir monolayers (Mlang). The adsorption of the peptides on a monolayer composed of dimiristoyl phosphatidic acid (DMPA) and dimiristoylphosphatidyl choline (DMPC) occurs through different processes due to the differences in the physic-chemical nature of the tyrosine and tryptophan residues. Fluorescence microscopy together with Mlang of DMPA with adsorbed 3W indicates an increase of the membrane fluidity while small circular domains are formed with DMPA. Simulations were conducted with the 3Y and 3W peptides in aqueous media, is a water/n-hexane and water/DMPC bilayers. The results confirm the Mlang results, showing that the peptides interact differently with the membranes by adopting alternative previously defined conformations. These two conformations, both of which are different to those observed in water, are dependent of the nature of the interfaces. The final simulated configurations confirm the mechanism proposed by Mlang and the structures proposed by CD. It is suggest that the reduced biological activity of the 3Y peptide is due to the two Leu residues that only adsorb to the cellular membrane without penetrating the bilayer. In contrast to the 3W peptide, no charged residue is correctly located to promote the interaction and insertion of the 3Y peptide into the membrane.