This thesis details the development of expertise and tools required for the study of amino acids deposited on Au(111), with a primary focus on the design and testing of a Knudsen cell for controlled deposition of L-cysteine and L-methionine. An ultra-high vacuum preparation chamber designed by Dr. Katie Mitchell and built by Torrovap Industries Inc. was installed. This chamber is connected to the existing scanning tunneling microscopy chamber via a gate valve, and both chambers can operate independently. Various instruments such as a mass spectrometer, quartz crystal microbalance, ion source, and sample manipulator were installed on the preparation chamber. Scanning tunneling microscopy was performed on both homemade and commercial Au(111) thin films. High resolution images of "herringbone" reconstruction and individual atoms were obtained on the commercial thin films, and optimal tunneling conditions were determined. A Knudsen cell was designed to be mounted on the preparation chamber. The Knudsen cell operates over the temperature range 300-400K, with temperatures reproducible to ±0.5K, and stable to ±0.1K over a five minute period. Reproducible deposition rates of less than 0.2Ǻ/s were obtained for both L-cysteine and L-methionine. Electron impact mass spectrometry and heat of sublimation measurements were performed to characterize the effusion of L-cysteine and L-methionine from the Knudsen cell. The mass spectrometry results suggest that L-cysteine was decomposing at 403K while L-methionine was stable during effusion. Heats of sublimation of 168.3±33.2kJ/mol and 156.5±10.1kJ/mol were obtained for L-cysteine and L-methionine respectively.

Nanoscience dominates virtually every field of science and technology in the 21st century. Nanoparticles are of fundamental interest since they possess unique size- dependent properties (optical, electrical, mechanical, chemical, magnetic etc.), which are quite different from the bulk and the atomic state. Bimetallic nanoparticles are of particular interest since they combine the advantages of the individual monometallic counterparts. The present study focuses on bimetallic nanoparticles containing gold as one of the constituents. Au-Pd, Au-Pt and Au-Ag bimetallic/alloy nanoparticles have been prepared by four different synthetic methods, and characterised by a variety of techniques, with an emphasis on Au-Ag alloy systems in the solution phase as well as in the form of nanostructured films on solid substrates. Au- Ag alloy nanoparticles have been used to demonstrate two different applications. The first is the use of Au-Ag monolayer protected alloy clusters in demonstrating single electron charging events in the solution phase as well as in the dry state. Single electron transfer events involving nanosized particles are being probed extensively due to their potential applications in the field of electronics. The second is an analytical application, involving the use of trisodium citrate capped Au-Ag alloy hydrosols as substrates for surface enhanced Raman and resonance Raman scattering [SE(R)RS] studies. The sols have been used for single molecule detection purposes. Various organic molecules such as quinones, phthalocyanines and methyl violet have been self- assembled in a stepwise manner on the nanoparticulate as well as bulk Au, Ag and Au-Ag surfaces, and characterised extensively by spectroscopic, electrochemical and spectroelectrochemical techniques.

Τα αυτό -οργανούμενα μονοστρωματικά συστήματα (self-assembled monolayers, SAMs) παρουσιάζουν μεγάλο τεχνολογικό και βιομηχανικό ενδιαφέρον καθώς προσφέρουν μοναδική ευκαιρία για την κατανόηση των διεπιφανειακών φαινομένων και των διεργασιών που σχετίζονται με αυτά. Ο έλεγχος των ιδιοτήτων διαβροχής και λίπανσης της επιφάνειας , η επιλεκτική ρόφηση διαφόρων ειδών μορίων (π .χ ., μεγάλων βιολογικών μορίων) για το σχηματισμό επιπρόσθετου μονοστρώματος προς μία προεπιλεγμένη δομή (π.χ ., με συγκεκριμένο μοριακό προσανατολισμό), ο σχεδιασμός βιοαισθητήρων αλλά και άλλα παραδείγματα αποτελούν μερικές μόνο από τις πιο διαδεδομένες εφαρμογές των SAMs. Στην παρούσα εργασία εστιάσαμε στο πιο διαδεδομένο σύστημα SAM, αυτό που δημιουργείται κατά τη ρόφηση μορίων αλκανοθειολών σε επιφάνεια χρυσού (R-SH/ Au(111)). Πιο συγκεκριμένα διερευνήσαμε τις δομικές ιδιότητες καθώς και τις ιδιότητες διαμόρφωσης του σχηματιζόμενου μονοστρώματος με τη βοήθεια ενός καινούργιου αλγορίθμου Monte Carlo (MC) που σχεδιάσαμε στο εργαστήριο, βασισμένου σ’ ένα ιδιαίτερα αποδοτικό μίγμα τόσο απλών όσο και πιο σύνθετων (συχνά μη φυσικών) κινήσεων για τη δειγματοληψία απεικονίσεων του συστήματος. Η καινοτομία του αλγόριθμου MC συνίσταται στο ότι, ανεξάρτητα από την αρχική απεικόνιση του συστήματος, έχει την ικανότητα να οδηγεί αποτελεσματικά όλα τα μόρια της αλκανοθειόλης επάνω στο υπόστρωμα του χρυσού με αποτέλεσμα στο τέλος της προσομοίωσης αυτό να χαρακτηρίζεται από 100% επιφανειακή κάλυψη. Κατά τον τρόπο αυτό παρακάμπτεται ένας σημαντικός περιορισμός των προηγούμενων μεθόδων , οι οποίες ουσιαστικά προ-υπέθεταν την αρχική απεικόνιση του συστήματος (στη βάση πειραματικών δεδομένων). Επιπλέον, λαμβάνοντας υπόψη ένα εκτεταμένο σύνολο αντιγράφων του συστήματος καθένα από τα οποία προσομοιώνεται σε μία διαφορετική τιμή της διαμέτρου van der Waals των ατόμων θείου, σss, και επιχειρώντας ανταλλαγές απεικονίσεων μεταξύ συστημάτων με παρακείμενες τιμές σss, ο νέος αλγόριθμος μας επέτρεψε να προσομοιώσουμε αποτελεσματικά πρότυπα συστήματα R-SH/Au(111) για ένα φάσμα τιμών της παραμέτρου σss από 4.25 Å που αντιστοιχεί στο μοριακό μοντέλο των Hautman-Klein [J. Chem. Phys., 1988; 1989] έως 4.97 Å που αντιστοιχεί στο μοριακό μοντέλο των Siepmann-McDonald [Langmuir, 1993]. Η εφαρμογή του αλγορίθμου MC επεκτάθηκε ακολούθως σε συστήματα αλκανοθειολών ροφημένων σε διαφορετικά μεταλλικά υποστρώματα, με σκοπό τη μελέτη της επίδρασης του είδους της μεταλλικής επιφάνειας στις δομικές ιδιότητες των συστημάτων SAMs. Προς την κατεύθυνση αυτή, αρχικά εκτελέστηκαν κβαντομηχανικοί υπολογισμοί ( ab initio calculations) για ένα μόριο μεθανοθειόλης ροφημένου σε επιφάνεια χρυσού, αργύρου ή πλατίνας και τα αποτελέσματα χρησιμοποιήθηκαν για την εξαγωγή ενός κλασσικού δυναμικού για την περιγραφή των αλληλεπιδράσεων μεταξύ θείου -μετάλλου. Με το δυναμικό αυτό διεξήχθησαν στη συνέχεια ατομιστικές προσομοιώσεις MC για διάφορα μοριακά μήκη συστημάτων SAMs R-SH και στη συνέχεια έγινε ανάλυση των δεδομένων, με έμφαση στην εξάρτηση των δομικών ιδιοτήτων του σχηματιζόμενου φιλμ (μοριακός προσανατολισμός, διαμόρφωση αλυσίδων και στατιστική των ατελειών gauche) από τη φύση του μεταλλικού υποστρώματος. Στο τελευταίο στάδιο της διατριβής εστιάσαμε στη μελέτη της θερμοκρασίας υαλώδους μετάπτωσης Tg ισότροπων συστημάτων αλλά και λεπτών υμενίων πολυαιθυλενίου (PE) με τις αλυσίδες εμφυτευμένες σε σκληρή, ενθαλπικά ουδέτερη επιφάνεια και σχετικά μεγάλη πυκνότητα εμφύτευσης. Για το λόγο αυτό επεκτάθηκε η μεθοδολογία προσομοίωσης MC σε χαμηλές θερμοκρασίες (κοντά στο ή ακόμα και χαμηλότερα από το σημείο Tg) χρησιμοποιώντας την πολύ δραστική κίνηση MC αναγεφύρωσης άκρων (end-bridging, EB). Τα δεδομένα της προσομοίωσης για την εξάρτηση της πυκνότητας και της ενθαλπίας από την θερμοκρασία χρησιμοποιήθηκαν για τον υπολογισμό της θερμοκρασίας υαλώδους μετάπτωσης, με το αποτέλεσμα να συμφωνεί σχεδόν επακριβώς με την αντίστοιχη πειραματική τιμή για ημικρυσταλλικό πολυαιθυλένιο στο όριο μηδενικού βαθμού κρυσταλλικότητας (προβλεπόμενη τιμή Tg μεταξύ 220 και 240 Κ). / Self-assembled monolayers (SAMs) find numerous applications in a variety of fields: in the production of thin films from organic materials, in optics and electronics, as means for controlling the hydrophobic or hydrophilic behavior of a surface, as coatings for the protection of surfaces from corrosion, in molecular recognition, and more recently even as biosensors. In an effort to understand the mechanisms and interactions controlling chain organization and packing in these systems and how these affect their macroscopic properties, the present thesis has focused on the development of a Monte Carlo (MC) algorithm, built around a set of simpler but also more complex (sometimes non-physical) moves, for the atomistic simulation of the SAM structures formed by the adsorption of short alkanethiol molecules on a Au(111) surface. The innovation of the MC algorithm is that it is capable of efficiently driving all alkanethiol molecules to the Au(111), thereby leading to full surface coverage, irrespective of the initial setup of the system. This circumvents a significant limitation of previous methods in which the simulation typically starts from optimally packed structures on the substrate that are close to thermal equilibrium. Further, by considering an extended ensemble of configurations each one of which corresponds to a different value of the sulphur-sulphur repulsive core potential, σ ss , and by allowing for configurations to swap between different σ ss values, the new algorithm can adequately simulate model R-SH/ Au(111) systems for values of σ ss ranging from 4.25 Å corresponding to the Hautman-Klein molecular model [J. Chem. Phys., 1988; 1989] to 4.97 Å corresponding to the Siepmann-McDonald model [Langmuir, 1993]. A thorough investigation of the variation of molecular organization and ordering on the Au(111)substrate with chain length is presented. In a parallel study, the MC method was extended to alkanethiol SAM systems on different metal surfaces. This has allowed us to perform a detailed investigation of the substrate’s effect on the structure and conformation of the above systems through atomistic MC simulations based on a first-principles density functional modeling of the sulphur-metal interaction. Ab initio calculations on a methanethiol molecule adsorbed on gold, silver and platinum surfaces were conducted and the data obtained were used to develop an accurate classical force field which served as an input to the new MC algorithm. Emphasis was given primarily to the study of the effect of the substrate on the structural properties of the simulated R-SH SAM systems, like molecular orientation, molecular conformation, and statistics of gauche defects. In the last part of this thesis, and in an attempt to investigate the phenomenon of glass transition ( Tg ), the MC algorithm was employed in simulations with a less complex, than the SAM structures, system, that of amorphous polyethylene (PE). Two sets of simulations were executed: one with a bulk, isotropic sample, and the other with a thin film in which all PE chains were grafted on a hard surface on the one side and exposed to vacuum on the other. In all cases, the simulations were carried out for very long times in order for the autocorrelation function of the chain end-to-end vector to drop practically to zero. For both systems, the value of the glass transition temperature Tg was extracted using volumetric and enhtalpic simulation data and it was found to be between 220 and 240K, i.e., in remarkable agreement with measured data for semicrystalline PE in the limit of zero crystallinity. Additional results about the temperature dependence of the conformational (e.g., the equilibrium mean-square chain end-to-end distance) and structural (e.g., the intermolecular pair distribution function) properties in the two PE systems were also obtained and discussed in detail.

Graphene, a two-dimensional counterpart of three-dimensional graphite, has attracted significant interest, due to its distinctive electrical and mechanical properties, for developing electronic, optoelectronic, and sensor technologies. In general, doping of graphene is important, as it gives rise to p-type and n-type materials, and it adjusts the work function of the graphene. This adjustment is necessary in order to control charge injection and collection in devices such as solar cells and light emitting devices. Current methods for graphene doping involve high temperature process or interactions with chemicals that are not stable. Moreover, the process of transferring graphene from its growth substrate and its exposure to the environment results in a host of chemical groups that can become attached to the film and alter its electronic properties by accepting or donating electrons/holes. Intentional and controllable doping of the graphene, however, requires a deeper understanding of the impact of these groups. The proposed research will attempt to clarify the unintentional doping mechanism in graphene through adsorption or desorption of gas/vapor molecules found in standard environments. A low temperature, controllable and defect-free method for doping graphene layers will also be studied through modifying the interface of graphene and its support substrate with self-assembled monolayers (SAMs) which changes the work function and charge carriers in the graphene layer. Furthermore, current methods of chemical vapor deposition synthesis of graphene requires the film to be transferred onto a second substrate when the metal layer used for growth is not compatible with device fabrication or operation. To address this issue, the proposed work will investigate a new method for wafer scale, transfer-free synthesis of graphene on dielectric substrates using new carbon sources. This technique allows patterned synthesis on the target substrate and is compatible with standard device fabrication technologies; hence, it opens a new pathway for low cost, large area synthesis of graphene films.

One the most daunting technical challenges in the realization of biosensors is functionalizing transducing surfaces for the detection of biomolecules. Functionalization is defined as the formation of a bio-compatible interface on the transducing surfaces of bio-chemical sensors for immobilizing and subsequent sensing of biomolecules. The kinetics of functionalization reactions is a particularly important issue, since conventional functionalization protocols are associated with lengthy process times, from hours to days. The objective of this thesis is the improvement of the functionalization protocols and their kinetics for biosensing applications. This objective is realized via modeling and experimental verification of novel functionalization techniques in microfluidic environments. The improved functionalization protocols using microfluidic environments enable in-situ functionalization, which reduces the processing times and the amount of reagents consumed, compared to conventional methods. The functionalization is performed using self-assembled monolayers (SAMs) of thiols. The thiols are organic compounds with a sulphur group that assists in the chemisorption of the thiol to the surface of metals like gold. The two reactions in the functionalization process examined in this thesis are the SAM formation and the SAM/probe molecule conjugation. SAM/probe molecule conjugation is the chemical treatment of the SAM followed by the binding of the probe molecule to the SAM. In general, the probe molecule is selective in binding with a given biomolecule, called the target molecule. Within this thesis, the probe molecule is an antibody and the target molecule is an antigen. The kinetics of the reaction between the probe (antibody) and the target biomolecule (antigen) is also studied. The reaction between an antigen and its antibody is called the immunoreaction. The biosensing technique that utilizes the immunoreaction is immunoassay. A numerical model is constructed using the finite element method (FEM), and is used to study the kinetics of the functionalization reactions. The aim of the kinetic studies is to achieve both minimal process times and reagents consumption. The impact of several important parameters on the kinetics of the reactions is investigated, and the trends observed are explained using kinetic descriptive dimensionless numbers, such as the Damköhler number and the Peclet number. Careful numerical modeling of the reactions contributes to a number of findings. A considerably faster than conventional SAM formation protocol is predicted. This fast-SAM protocol is capable of reducing the process times from the conventional 24-hours to 15 minutes. The numerical simulations also predict that conventional conjugation protocols result in the overexposure of the SAM and the probe molecule to the conjugation reagents. This overexposure consequently lowers conjugation efficiencies. The immunoreaction kinetics of a 70 kilo-Dalton heat shock protein (HSP70) with its antibody in a hypothetical microchannel is also investigated through the FEM simulations. Optimal reaction conditions are determined, including the flow velocity and the surface concentration of the immobilized probes (antibodies). Based on the numerical results and a series of experimental studies, the fast-SAM protocol application is successfully confirmed. Moreover, the optimum reagent concentration for a given one- hour conjugation process time is determined. This functionalization protocol is successfully applied to immobilize the HSP70 antibody on gold surfaces. The use of the fast-SAM protocol and the predicted optimum conjugation conditions result in binding of the HSP70 antibody on gold, with the same or superior immobilization quality, compared to the conventional protocols. Upon implementation of a 70 μm.s^(-1) flow velocity, the reaction is observed to complete in around 30-35 minutes, which is close to the numerically predicted 30 minutes and 16 seconds. This immunoreaction time is considerably less than conventional 4-12 hour processes. The modified in-situ functionalization techniques achieved here are promising for substantially reducing the preparation times and improving the performance of biosensors, in general, and immunoassays, in particular.

Magister Scientiae - MSc / Indinavir is a potent and well tolerated protease inhibitor drug used as a component of the highly active antiretroviral therapy (HAART) of HIV/AIDS, which results in pharmacokinetics that may be favourable or adverse. These drugs work by maintaining a plasma concentration that is sufficient to inhibit viral replication and thereby suppressing a patient’s viral load. A number of antiretroviral drugs, including indinavir, undergo metabolism that is catalysed by cytochrome P450-3A4 enzyme found in the human liver microsomes. The rate of drug metabolism influences a patient’s response to treatment as well as drug interactions that may lead to life-threatening toxic conditions, such as haemolytic anaemia, kidney failure and liver problems. Therapeutic drug monitoring (TDM) during HIV/AIDS treatment has been suggested to have a potential to reduce drug toxicity and optimise individual therapy. A fast and reliable detection technique, such as biosensing, is therefore necessary for the determination of a patient’s metabolic profile for indinavir and for appropriate dosing of the drugs. In this study biosensors developed for the determination of ARV drugs comprised of cysteamine self-assembled on a gold electrode, on which was attached 3-mercaptopropionic acid-capped palladium telluride (3-MPA-PdTe) or thioglycolic acid-capped palladium telluride (TGA-PdTe) quantum dots that are cross-linked to cytochrome P450-3A4 (CYP3A4) in the presence of 1-ethyl-3(3-dimethylaminopropyl) carbodiimide hydrochloride and N-hydroxysuccinimide. The quantum dots were synthesized in the presence of capping agents (3-MPA or TGA) to improve their stability, solubility and biocompatibility. The capping of PdTe quantum dots with TGA or 3-MPA was confirmed by FTIR, where the SH group absorption band disappeared from the spectra of 3-MPA-PdTe and TGA-PdTe. The particle size of the quantum dots (< 5 nm) was estimated from high resolution transmission electron microscopy (HRTEM) measurements. Optical properties of the materials were confirmed by UV-Vis spectrophotometry which produced absorption iii bands at ~320 nm that corresponded to energy band gap values of 3 eV (3.87 eV) for TGAPdTe (3-MPA-PdTe) quantum dots. The electrocatalytic properties of the quantum dots biosensor systems were studied by cyclic voltammetry (CV) for which the characteristic reduction peak at 0.75 V was used to detect the response of the biosensor to indinavir. Results for indinavir biosensor constructed with 3-MPA-SnSe quantum dots are also reported in this thesis. The three biosensors systems were very sensitive towards indinavir; and gave low limits of detection (LOD) values of 3.22, 4.3 and 6.2 ng/mL for 3-MPA-SnSe, 3-MPA-PdTe and TGA-PdTe quantum dots biosensors, respectively. The LOD values are within the ‘maximum plasma concentration’ (Cmax) value of indinavir (5 - 15 ng/mL) normally observed 8 h after drug intake.

Ce travail porte sur l’étude des interfaces semi-conducteur/diélectrique et semiconducteur/électrode dans les transistors organiques à effet de champ (OFETs). En effet, le transport et l’injection des charges se trouvent affectés par la qualité de ces interfaces.L’objectif est donc la compréhension de l’influence des caractéristiques morphologiques(rugosité, énergie de surface) et électroniques (travail de sortie) du diélectrique ou del’électrode sur les performances des OFETs.Dans un premier temps, des OFETs sur substrats de silicium à base de pentacène ontété fabriqués et les interfaces traitées à l’aide de monocouches auto-assemblées (SAMs). Legreffage des SAMs tels que l’OTS8 ou l’OTS, en neutralisant les groupes hydroxyles et enprésentant une surface apolaire, conduit à une réduction de la densité de pièges en surface. Deplus, les pièges présents dans la couche active et dus aux joints de grains sont moinsnombreux grâce à une croissance 2D en larges grains du pentacène sur OTS. Cesmodifications de l’interface sont mises en évidence par une réduction de la tension de seuil,de la pente sous le seuil ainsi que de l’hystérésis. Le transport ainsi favorisé des chargespermet une amélioration de la mobilité jusqu’à 0,6 cm2/Vs.Nous nous sommes également intéressés à l’interface semi-conducteur/électrode et àsa modification par des SAMs fluorés tels que le PFBT, le PFHT et le PFDT. L’influence desSAMs est présente tant au niveau morphologique, en améliorant la continuité de croissance dupentacène à la jonction diélectrique/électrode qu’au niveau électronique en augmentant letravail de sortie de l’électrode. La réduction de la résistance de contact RC souligne clairementces modifications et conduit à des mobilités maximales de 0,6 cm2/Vs. Par la suite, nousavons choisi de modifier ces deux interfaces dans un même dispositif, ce qui nous a permisd’atteindre des mobilités moyennes élevées de 1,3 cm2/Vs.La dernière partie de ces travaux a été dédiée à la fabrication d’OFETs basse tension àbase de pentacène ou de C60 sur substrats de verre. Le caractère basse tension de cesdispositifs est rempli grâce à l’utilisation d’un diélectrique composé de deux couches : undiélectrique à forte constante diélectrique, l’oxyde d’aluminium, et une fine couche d’undiélectrique à faible constante diélectrique comme les SAMs (C8-PA ou C18-PA) ou lespolymères (PMMA ou PVT). Cette combinaison permet d’atteindre des mobilités(m = 0,4 cm2/Vs) encourageantes pour des OFETs de type n ainsi que de faibles hystérésis(<0,1 V) dans le cas d’OFETs de type p. / The charge transport and injection are strongly dependant of the semiconductor/dielectric and semi-conductor/electrode interfaces quality. Therefore, this studyfocuses on these interfaces in organic field effect transistors (OFETs). The goal is theunderstanding of the relation between the dielectric (roughness, surface energy) or electrode(work function) characteristics and the OFETs performances.First, we investigate the influence of the interfaces modification by SAMs (SelfAssembled Monolayers) in pentacene based OFETs on silicon substrates. Due to the SAMsgrafting such as OTS8 or OTS, the hydroxyls groups are neutralized and the dielectric showsan apolar surface leading to the reduction of the charge traps density. Moreover, a 2Dpentacene growth with large grains on OTS surface contributes to the decrease of the chargetraps density in the bulk. The threshold voltage, subthreshold swing and hysteresis decreasesgive rise to these modifications. The improvement of the charge transport allows us to reachmobility up to 0.6 cm2/Vs.Then, we investigate the electrode surface treatment by fluorinated SAMs such asPFBT, PFHT or PFDT. The better pentacene layer continuity and the increased electrodework function emphasize the morphologic and electronic influences of the SAMs. Thesemodifications lead to the contact resistance reducing and in consequence to an enhancedmobility up to 0.6 cm2/Vs. Finally, devices with a combination of the interfaces treatmentpresent high mean mobility of 1.3 cm2/Vs.On the final part of this study, we concentrate on low voltage C60 or pentacene basedOFETs on glass substrates. Using a dielectric composed of a high-k dielectric as AlOx and athin layer of a low-k dielectric such as phosphonic SAMs (C8-PA or C18-PA) or polymers(PMMA or PVT) allow us to achieve this low voltage condition. The mobility obtained withn-type OFETs (m = 0.4 cm2/Vs) and the small hysteresis (<0.1 V) in p-type OFETs arepromising.

Este trabalho visa ao entendimento da interação de capsaicinóides com membranas celulares utilizando sistemas modelo. Dentre os alcalóides derivados de plantas do gênero Capsicum, a capsaicina e a dihidrocapsaicina respondem por 90% dos capsaicinóides, que são usados como analgésicos e antiinflamatórios, devido a sua interação específica com receptores. O mecanismo neurofarmacológico já foi bastante estudado, mas o modo de ação não neural ainda não foi elucidado. Usamos extratos brutos (EBs) de pimenta malagueta e de dedo-de-moça, que têm atividade superficial, e afetaram monocamadas de Langmuir de fosfatidil colina de dipalmitoíla (DPPC) e fosfatidil glicerol de dipalmitoíla (DPPG). Tais efeitos não tiveram dependência expressiva com a carga, pois o EB de dedo-de-moça interagiu mais fortemente com o DPPC do que com o DPPG, ao passo que o contrário se verificou para o EB de malagueta. Também não houve diferença significativa entre os EBs das duas pimentas. Nas monocamadas de Langmuir representativas para a bactéria S. aureus, ambos os EBs tiveram efeito, tanto nas isotermas de pressão quanto nos resultados de espectroscopia de absorção e reflexão no infravermelho com modulação de polarização (PM-IRRAS), sem distinção significativa entre malagueta e dedo-de-moça. No entanto, as medidas de vazamento com lipossomos mostraram maior interação com o EB de dedo-de-moça, o que é consistente com a atividade bactericida para S. aureus. De fato, a concentração inibitória mínima (MIC) foi 0,13 mg mL-1 para o EB da pimenta dedo-de moça e 4,0 mg mL-1 para o EB de malagueta. Para a E. coli, os EBs interagiram com as monocamadas de Langmuir sem diferenças dignas de nota para as duas pimentas, e nas medidas de vazamento o efeito maior foi para a dedo-de-moça. Não houve efeito bactericida para nenhum dos extratos. Isso se explica porque bactérias gram-negativas, como a E. coli, têm uma camada externa protetora de lipossacarídeos (LPS). Das medidas de monocamadas de Langmuir representativas da camada de LPS, observou-se pouca incorporação dos EBs. Conclui-se, assim, que os EBs não conseguem causar rompimento da camada de LPS. Do conjunto dos resultados, infere-se que o mecanismo de ação para a S. aureus envolve solubilização parcial da membrana, e não há relação entre pungência e atividade bactericida, pois a pimenta dedo-de-moça, que é menos pungente, teve maior efeito do que a malagueta. Depreende-se, também, que a ação de extratos de pimenta deve depender da interação com receptores na membrana, o que explica porque o uso de tais extratos tem sido principalmente em aplicações tópicas. / This study is aimed at understanding the interaction of capsaicinoids with cell membranes using model systems. Among the alkaloids derived from plants of the genus Capsicum, capsaicin and dihydrocapsaicin account for 90% of capsaicinoids, which are used as analgesic and anti-inflammatory due to their interaction with specific receptors. The neuropharmacological mechanism has been well studied, but the non-neural mode of action has not been elucidated. Here, we use crude extracts (EBs) of malagueta and dedo-de-moça chilli peppers, which are surface active, and affected Langmuir monolayers of dipalmitoyl phosphatidylcholine (DPPC) and dipalmitoyl phosphatidyl glycerol (DPPG). Such effects did not depend on the charge, since EB from dedo-de-moça interacted more strongly with DPPC than with DPPG, while the opposite applied for malagueta. In addition, there was no significant difference between the two EBs. For Langmuir monolayers representing the bacteria S. aureus, both EBs affected the surface pressure isotherms and the polarizationmodulated infrared reflection-absorption spectroscopy (PM-IRRAS) data, without significant distinction between dedo-de-moça and malagueta. However, in the leakage measurements with liposomes the EB from dedo-de-moça was more efficient in rupturing the liposome, which is consistent with the bactericidal activity for S. aureus. In fact, the minimum inhibitory concentration (MIC) was 0.13 mg mL-1 for dedo-de-moça and 4.0 mg mL-1 for malagueta. For the Langmuir monolayers mimicking the E. coli membrane, the EBs interacted much in the same way, while the EB from dedo-de-moça caused larger leakage in liposomes. There was no bactericidal effect of the EBs. This is explained by the fact that gram-negative bacteria, such as E. coli, have a protective outer layer of liposaccharides (LPS). In monolayers representing LPS, there was little incorporation of EBs, from which one infers that the EBs cannot cause disruption of the LPS layer. Taking all these results together, it appears that the mechanism of action for S. aureus involves partial solubilization of the membrane. Furthermore, there is no relationship between pungency and bactericidal activity because dedo-de-moça, which is less pungent, had greater effect than malagueta. It seems also that the action of pepper extracts must depend on the interaction with membrane receptors, which explains why the use of such extracts has been essentially in topical applications.

Submitted by Veronica Neshmi Salaues Mendoza (neshmi_salaues@hotmail.com) on 2018-04-18T15:18:38Z No. of bitstreams: 1 Salaues_M_Dissert_Araraiq.pdf: 2461056 bytes, checksum: b0790442c72a5c574565c09b578075df (MD5) / Approved for entry into archive by Ana Carolina Gonçalves Bet null (abet@iq.unesp.br) on 2018-04-18T19:43:41Z (GMT) No. of bitstreams: 1 mendonza_vns_me_araiq_int.pdf: 2392917 bytes, checksum: 3697fdc59d96b5ae59f7207b7abe76e6 (MD5) / Made available in DSpace on 2018-04-18T19:43:41Z (GMT). No. of bitstreams: 1 mendonza_vns_me_araiq_int.pdf: 2392917 bytes, checksum: 3697fdc59d96b5ae59f7207b7abe76e6 (MD5) Previous issue date: 2018-03-13 / Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) / O sucesso no tratamento de muitos tipos doenças passa pela detecção seletiva e sensível de biomarcadores proteicos que permitam um diagnóstico precoce. A dengue é uma doença infecciosa de diagnóstico clínico impreciso e diagnóstico laboratorial demorado e custoso, a qual não possui tratamento ou vacina efetivos. Portanto se requer de ferramentas diagnósticas precisas, baratas e portáveis que permitam o diagnóstico rápido para realizar um tratamento adequado de sintomas e identificar os focos infecciosos para prevenir o espalhamento da doença. Um biomarcador útil na detecção da dengue, é a proteína NS1 que vem sendo utilizada com sucesso em diferentes plataformas de diagnóstico. Porém, nenhuma das plataformas oferecidas a nível comercial, consegue combinar a precisão, portabilidade, baixo custo e facilidade de manuseio. Portanto, o melhoramento de ditas ferramentas é o foco de bastantes pesquisas. Neste trabalho se apresenta uma plataforma que se amostra útil para a detecção de diferentes biomarcadores, incluindo a proteína NS1. Esta plataforma combina o uso de uma técnica eletroquímica como é a Espectroscopia de Capacitância Eletroquímica (ECE), com o uso de peptídeos redox e está baseada na funcionalização de eletrodos de ouro mediante formação de monocamadas auto-organizadas (SAM) confeccionadas com um peptídeo redox (Fc-Glu-Gli-Ser-Gli-Ser-Cys) desenhado para ser ancorado em superfícies metálicas, ao mesmo tempo que tem capacidade de ancorar uma sonda redox e um bioreceptor na mesma estrutura/molécula, com a vantagem adicional que a SAM obtida tem propriedades anti-incrustantes desejáveis em biossensoriamento. Ensaios realizados com a proteína NS1 permitiram a detecção de esta proteína em concentrações de 2 µg/ml. / Success in the treatment of many kinds of illnesses depends on the selective and sensitive detection of protein biomarkers that allow an early diagnosis. Dengue is and infectious disease of imprecise clinical diagnostic and delayed and expensive laboratorial diagnostic. This disease does not have an effective vaccine or treatment. Therefore, precise, cheap and portable diagnostic tools are necessary to allow a fast diagnostic in order to treat the symptoms, identify focuses of infection, and thus prevent the spreading of the disease. A useful biomarker in the detection of dengue is the protein NS1, which has been successfully used in different diagnostic platforms. However, none of the commercially available platforms combines precision, portability, low cost and user friendliness. Consequently, the improvement of such tools is object of ample research. This work, introduces a platform, which is useful for the detection of various biomarkers, including the protein NS1. This platform combines the usage of an electrochemical technique such as Electrochemical Capacitance Spectroscopy (ECS) and the use of redox peptides. It is based in the functionalization of gold electrodes through formation of Self Assembled Monolayers (SAM) formed by a redox peptide (Fc-Glu-Gli-Ser-Gli-Ser-Cys) designed to bind to metallic surfaces as well as to anchor a redox probe and a bioreceptor in the same structure/molecule. It presents the additional advantage of forming anti-fowling SAMs, which is a highly desirable property for biosensing. Tests made with NS1 protein allowed the detection of this protein in concentrations as low as 2 µg/ml. / 190233/2015-0

Nanotecnologia é o conjunto de conhecimentos acumulados pelo homem que permite controlar a produção de estruturas com uma ou mais dimensões nanométricas. Desde seus primórdios na década de 70, a nanotecnologia tem estado em constante ascensão, encontrando uma diversidade enorme de aplicações, como por exemplo em medicina e na indústria optoeletrônica. Por consequência, a demanda por equipamentos tanto de preparo como de caracterização/controle tem crescido exponencialmente. O uso da radiação X no estudo de dispositivos nanoestruturados tem sido, em grande parte, possível gra- ças as fontes síncrotrons com feixes intensos. Mas a disponibilidade desses laboratórios de alta tecnologia está aquém da crescente demanda das pesquisas em nanotecnologia, as quais precisam de técnicas de análise estrutural rápidas e de fácil acesso para otimização e controle da produção de dispositivos nanoestruturados. Com foco nessa falta por técnicas de análise estrutural, esta dissertação tem como objetivo avaliar quais parâmetros básicos de nanodispositivos, com substratos monocristalinos, podem ser investigados por meio de técnicas de difração de raios X utilizando fontes compactas de radiação, bem como avaliar as limitações instrumentais. / X-ray radiation has provided a powerful tool for analyzing the structure of materials at atomic scale. While many are fascinated with the perspectives oered by advanced X-ray sources, the practical aspects of these perspectives in the actual and future scenery of nanotechnology needs to be discussed. Nanotechnology, i.e. the capacity of controlling matter at atomic-molecular scales and manufacturing structures with dimensions of a few tens of nanometers, has provided a constant challenge for structural analysis via X-ray techniques. The great diversity of materials and methods derived from nanotechnology is generating a huge demand for time of analysis, much beyond of that can be supplied by synchrotron facilities worldwide. In optimizing nanostructured materials and devices processing methods, fast and easy-access techniques to control and characterization are required. Microscopy and spectroscopy techniques are very important in this scenery, but they have intrinsic limitations that have justied the search for high-resolution techniques of structural analysis, such as those obtained by diraction of X-rays. The use of Xradiation in the study of nanostructured device has been possible by synchrotron sources due to the high intense beams. But the availability of these high tech laboratories falls short of the growing demand for nanotechnology research. In this context, this dissertation intend evaluate which basic parameters of nanodevices with single crystal substrates can be investigated by techniques of X-ray diraction using compact radiation sources as well how to evaluate the instrumental limitations .