This thesis covers different topics in the field of synthetic organic chemistry combined with the field of surface science and glycobiology. First, the text presents a series of orthogonally protected oligosaccharides (tri-, penta-, and heptasaccharides) of varying length and structures, which are synthesized with the aim of developing novel heterobifunctional biocompatible cross-linkers. Successful conjugation with different chemical handles is also described and used to illustrate the potential implementation of defined carbohydrate based compounds have potential use in biosensing applications. The results of incubation experiments using living cells indicate that the linker is incorporated into cell surfaces and enriched in microdomains. Second, synthesis of various saccharide-terminated alkane thiols immobilized on gold surfaces is reported. The protein adsorption and antifouling characteristics of these surfaces were investigated using model proteins and the common fouling organisms, Ulva linza and Balanus amphitrite. Further, oligo(lactose)-based thiols (di-, tetra-, and hexasaccharides) were synthesized and immobilized on gold nanoparticles to investigate how well these rigid, rod-like oligosaccharides can stabilize such nanoparticles for future use in constructing hybrid nanoparticles. Finally, the thesis describes synthesis of a systematic series of oligo(ethylene) glycols possessing either hydrogen- or methyl-terminated groups. Investigation of the fundamental characteristics of self-assembled monolayers, will give important insights into the design of protein repellant surfaces.

Neste trabalho foi estudado o desenvolvimento de uma superfície modelo de silício monocristalino, SiO2/Si, modificada com organossilanos derivados de N-heterocíclicos que permitisse a imobilização de um complexo de coordenação, FeTIM. Estas superfícies modificadas poderão ser empregadas em estudos de reatividade frente a analitos de interesse, como o NO. Sob esse aspecto, a síntese desses novos silanos, contendo N-heterocíclicos, e o desenvolvimento de uma metodologia de formação dos filmes finos automontados, sobre a superfície de SiO2/Si, tornou-se de grande relevância na aplicabilidade deste trabalho. Para a obtenção dessas superfícies, fez-se necessária a compreensão dos parâmetros de formação dos filmes de silanos. Os parâmetros estudados foram os efeitos do tempo de adsorção, da concentração da solução dos silanos, da polaridade do solvente e do tamanho da cadeia alquílica do silano no processo de formação dos filmes. Deste modo, foi possível inferir sobre as alterações na morfologia e na estrutura química dos filmes formados, através de medidas de Espectroscopia de Fotoelétrons excitados por Raios-X (XPS), Microscopia de Força Atômica (AFM) e Microscopia Eletrônica de Varredura (MEV). A imobilização do complexo de FeTIM sobre a superfície organomodificada foi comprovada pela variação da linha de fotoemissão do Fe 2p nas medidas de XPS. / This work describes the study of model surfaces on oxidized silicon wafer, SiO2/Si, modified with N-heterocycles rings, that allows the grafting of a macrocycle iron complex, FeTIM, that could be used in reactivity studies, with biologically relevant molecules, as nitrogen monoxide (NO). On this way, the synthesis of these silanes and a new methodology of the formation of self-assembled monolayers had become a relevant question on this work applicability. These thin films contain silanes bearing nitrogenated Lewis bases on silicon surfaces. In order to obtain these modified surfaces, it was necessary a comprehensive study of the adsorption parameters of the thin films. The parameters studied were the effect of: adsorption time, the solution concentration, the role of the solvents polarity and the chain length alkylsilanes in the film formation. Then, it was possible to infer about the film\'s morphology differences and chemical structures by the XPS, AFM and MEV measurements. X-ray photoemission lines of Fe 2p were used to probe the iron chemical environment in the chemically adsorbed macrocycles complexes.

Lors de la mise au point de biocapteurs, le contrôle de l'état de surface sur laquelle sontimmobilisées les biomolécules est un paramètre crucial pour la fiabilité et la reproductibilité desmesures. Pour ce travail de Thèse, deux objectifs principaux ont été fixés :- obtenir de façon reproductible des films organiques fonctionnels capables de rendre lessurfaces inorganiques biocompatibles afin d'immobiliser des biomolécules sans les dénaturer.- se doter d'outils innovants afin d'analyser la distribution de biomolécules sur la surface etd'évaluer leur activité biologique à l'échelle de la molécule unique.L'immobilisation a été réalisée sur des SAMs terminées par une fonction acide carboxylique.Pour imager les surfaces nous avons choisi la Microscopie Atomique de Force (AFM) qui permetd'obtenir des informations à l'échelle nanométrique et de mesurer des interactions moléculaires del'ordre du piconewton (10-12 N).Des CNTs, générés par dépôt chimique en phase vapeur, sont fixés sur une pointe AFM. Puis Ilssont biofonctionnalisés selon un protocole de trempage original afin d'obtenir une modificationchimique sélective de leur apex. Les interactions entre un récepteur, immobilisé sur la surface, et sonligand, lié de façon covalente au CNT, sont mesurées à l'échelle de la molécule unique. / During the development of biosensors, control of the surface on which the biomolecules areimmobilized is a crucial parameter for the reliability and reproducibility of the measurements. For thisPhD work, two main objectives were set:- obtain in a reproducible way functional organic films able to make inorganic surfacebiocompatible for the immobilization of biomolecules without any denaturation.- develop innovative tools in order to analyze the distribution of biomolecules on the surface etevaluate their biological activity at single molecule scaleThe immobilization step was done on SAMs terminated by a carboxylic acid function.In order to image surfaces, Atomic Force Microscopy (AFM) was chosen. This technique permits toobtain information at nanometric scale and to measure molecular interactions in the range ofpiconewton forces (10-12 N).MWCNTs were linked to a commercial AFM tip by micro-welding under optical microscopy. CNTswere biofunctionalized at the nanotube apex by an original dipping procedure.The interactions between a ligand, immobilized on the surface, and a receptor covalently linked to aCNT have been characterized.

An alkyl-containing self-assembled monolayer is grafted on the silicon surface by a nature process in solutions. The alkyl thin film was used as the lubricant for the silica interface, usually applied to the MEMS or NENS domains. The ability of reducing friction for silica device at room temperature was improved, but little was known as the thin films existed at higher temperature during device was working or operating. In this study, we used Hexyltrichlorosilane (C6), Dodecyltrichlorosilane (C12), and Octadecyltrichlorosilane (C18) molecules to form self-assembled monolayers (SAMs) on silicon, and these monolayers exhibited different molecular packing properties due to different interactions between the molecules. Fourier transform infrared spectroscopy (FTIR) revealed that the short chain-length (C6) molecules exhibited poor packing on the surface at room temperature, and that the molecular packing of C6 was thermally stable up to 500 K. But the C12 and C18 monolayers exhibited abrupt blue shifts in FTIR at temperatures between 300 and 575 K, with stable packing observed over several temperature ranges. Furthermore, water contact angle measurements showed the C6, C12, and C18 molecular films changed from hydrophobic to hydrophilic as the sample temperature was increased. Atomic force microscopy (AFM) images revealed that pits had formed in the C18 monolayer after the temperature was increased to 460 K, which were caused by the molecular reorganization of C18 on the surface. This resulted in an abrupt change in the friction coefficient for the C18 monolayer at 460K as compared to the short C6 and C12 monolayers. However, the friction coefficients for all the SAM films still increased with temperature. Understanding the temperature-dependent behavior of SAM film molecules will assist in the design of better anti-wear monolayers to improve performance and increase lifetimes in modern MEMS and NEMS devices.

The Langmuir – Blodgett (LB) technique is about forming insoluble monolayer on the surface of aqueous solution and recently, it has emerged as one of the best method to study floating monolayer at the air – water interface. It has gained popularity after the use of monolayer with chemical complexes as well as biological species, and recently it has been used for the formation of biosensors. Langmuir monolayer arrays the amphiphilic molecules in a fashion where the hydrophobic part points towards the air and the hydrophilic group remains in contact with the aqueous subphase. Due to this property of Langmuir monolayer to orient the molecules at the air – water interface in a particular fashion, it can successfully serve as a template for two – dimensional reactions with restricted freedom. Hence, Langmuir monolayer has been extensively employed to study chemical and biological reactions at the air – water interface. To understand the behavior of Langmuir monolayer, surface pressure – molecular area (P – A) isotherms are studied as these P – A isotherms illustrate general conditions regarding the phase behavior of the two-dimensional Langmuir monolayer. Any change occurring due to the alignment of aliphatic molecules forming the monolayer is reflected by the change in P – A isotherms, which is known as phase transition. The phase transition is the most important element of the P – A isotherms with a characteristic signature of a plateau region in the isotherms. This phase transition point changes with the change of certain external parameters such as temperature, pH, and ionic strength, and as a result gives general information regarding the phase transition behavior. Therefore, with the little change of external parameters, the arrangement of the molecules in the monolayer also changes, which is reflected in the change in the nature of the isotherms. Thus, the system can, in principle, be used to define several physical parameters associated with it. On account of the property of Langmuir monolayer to orient the molecules at the air – water interface with restricted mobility and due to their condensed nature known as solid like phase, it closely mimics the situation inside a biological cell. Hence, we wanted to test whether an artificial nucleus can be generated at LB films. This can be achieved by immobilizing DNA or protein at the air – water interface and then by promoting their biological properties through macromolecular recognition. Here, immobilization of a macromolecule of biological relevance, its interaction with another component of a cell and extracting the thermodynamic parameters utilizing the LB technique will be of significance. This thesis embodies the immobilization of some biologically important proteins then follows their activity as well as DNA recognition properties at the air – water interface. A set of equations are derived here for the two dimensional Langmuir monolayer, which are used to calculate the thermodynamics of the system under study. Chapter 1 outlines the information about Langmuir monolayer and LB films. It sketches the historical background of the Langmuir monolayer and also elucidates the theory behind the same. This chapter cites the technical details of formation of Langmuir monolayer and LB films viś – a – viś other methods available for the fabrication of monomolecular films. It adequately discusses the functional LB films and their utilization for various different purposes. Finally, the role of metal ions in the LB films and in immobilizing biological macromolecules is discussed. Chapter 2 discusses the different techniques employed to perform the experiments described in this thesis. It includes the purification methods for the different proteins and DNA; the details of formation of Langmuir monolayer and fabrication of LB films. This chapter also describes the various techniques used for the characterization of the LB films, i.e Atomic Force Microscopy (AFM) and Fourier Transform Infrared (FTIR) spectroscopy. In Chapter 3, immobilization and imaging of protein molecules and protein DNA complexes on a LB substrate have been explored. Firstly, we describe the preparation of a Ni (II) – arachidate (NiA) monolayer and its characterization through P – A isotherm on a LB trough. Then, recombinant RNA polymerase from Escherichia coli, where the largest subunit was replaced with the same gene having a series of histidine amino acids at the C-terminus end of the protein, was immobilized over the NiA monolayer through a Ni (II) – histidine interaction. A single molecule of RNA polymerase (RNAP) could be seen through intermittent-contact AFM. Under the condition of the formation of the LB monolayer, the enzyme molecules were arrayed and transcriptionally active. Interestingly, they could pick up sequence specific DNA molecules from the subphase in an oriented fashion. In Chapter 4, the interaction between NiA and histidine tagged RNAP (HisRNAP), and RNAP and DNA were studied. LB films of Arachidic acid – NiA, NiA -HisRNAP and NiA – HisRNAP – DNA with different mole fractions were fabricated systematically. P -A isotherms were registered, and the excess Gibbs energy of mixing was calculated. The LB films were then deposited on solid supports for FTIR spectroscopic measurements. The FTIR spectra revealed the change in the amount of incorporated Ni (II) ions into the AA monolayer with the change in pH. The increase in mole fraction of RNAP and DNA in the NiA and NiA – RNAP monolayer, respectively, with their increasing concentration in the subphase are also noticed. The system developed here is robust and can be utilized to follow macromolecular interactions. In chapter 5, the Langmuir monolayer has been utilized to array a protein, Dps, specific for Fe (II) and non-specific for DNA. Dps from Mycobacterium smegmatis is known to have a cage like structure, exists in two oligomeric states, trimer and dodecamer, and can accommodate Fe (II) ions in its internal cavity. In addition, it converts Fe (II) to Fe (III), both in trimeric and dodecameric form, whereas the latter species is specific for non-specific DNA binding. We demonstrate here that, histidine tagged Dps in both oligomeric states can be immobilized on NiA LB films, where both ferroxidation and DNA binding ability remained unaffected in the ordered protein assembly. Interestingly, when Fe (II) – arachidate was used to generate a LB layer instead of NiA, Dps protein not only recognizes Fe (II) ion in the monolayer, it also converts it to Fe (III) ion in a time dependent fashion. However, once Fe (III) – Dps complex is formed and arrayed on LB monolayers, it remains very stable.

Low energy (tens of eV) polyatomic cations were used as probes for characterization of monolayers of spontaneously chemisorbed thiols on gold. Characteristics including chemical composition, surface order and orientation of the self-assembled monolayers (SAMs) can be derived by monitoring the products of projectile ion neutralization, surface-induced dissociation (SID), and ion-surface reactions.To study the influence of the terminal group chemical structures and orientations of the SAMs on ion-surface interactions, a series of semi-fluorinated alkane thiols with difluoromethylenes buried underneath hydrocarbon terminal groups were examined (CH3CF2CH2− and CH3CH2CF2−). Compared to terminally fluorinated SAMs, they showed more projectile ion neutralization and less internal to vibrational energy deposition into precursor ions. Projectile ion-hydrocarbon reactions decreased significantly when difluoromethylenes are one or two bonds away from the terminal group. Furthermore, ion-surface reaction results on surfaces with odd and even chain lengths suggested that they have similar terminal methyl orientations to their hydrocarbon counterparts.Mixed monolayers of CF3CF2(CH2)14SH (F-SAMs) and CH3(CH2)15SH (H-SAMs) with systematically changing electron transfer, energy deposition and ion-surface reaction were prepared using mixed thiols solution and micro-contact printing (μ-CP). The solution mixture system showed linear variations in electron transfer and energy deposition with different F-SAM surface concentrations, while non-linear changes occur for ion-surface reaction suggesting strong lateral interactions between the two components. These interactions are minimized in the μ-CP system containing domains of each thiol. Energy deposition on the patterned surfaces varies non-linearly with changing F-SAM concentration which differs from the homogenously mixed system.To explore SID with a 90 collision angle, eV SID of a series of protonated peptide ions were performed in an in-line sector Time-Of-Flight (TOF) mass spectrometer. The results were compared to keV collision-induced dissociation (CID) data collected with the same instrument. Fragmentation efficiency for SID was higher than CID for those peptides. In addition to the excellent control over laboratory collision energies with SID, different amount of energy deposition can be achieved when varying surface composition, e.g. using mixed F-SAM/H-SAM.Reactive ion scattering spectrometry (RISS) results provided more in-depth knowledge of low energy ion-surface interactions that will promote usage of RISS as a novel surface characterization technique.

Diese Arbeit beinhaltet unsere Studien an selbstorganisierenden Monoschichten (engl. SAM = self- assembled monolayer) einiger aromatischer Thiole auf Gold- und Kupferoberflächen. Die Bildung von Monoschichten von Thiophenol, 4-Mercaptophenol, 4-Nitrothiophenol, 4-Aminothiophenol, 1,4-Dithiobenzol, 4-Mercaptopyridin und 2-Mercaptopyridin auf Au und Cu wurde untersucht und charakterisiert. Das abschirmende Verhalten und die strukturelle Anordnung dieser Monoschichten wurden mit Hilfe elektrochemischer und spektroskopischer Methoden geprüft und bestimmt. Zyklische Voltammetrie und oberflächenverstärkte Raman Spektroskopie wurden intensiv zur Aufklärung von Elektronentransferreaktionen an diesen mit SAMs modifizierten Oberflächen genutzt. Elektrochemische Studien von Monoschichten aus Thiophenol, 4-Mercaptophenol, 4-Nitrothiophenol, 4-Aminothiophenol, 1,4-Dithiobenzol, 4-Mercaptopyridin und 2-Mercaptopyridin in 0,1 M wässriger KClO4-Lösung lassen schlussfolgern, dass diese Moleküle schwefelseitig an die Substratoberfläche gebunden sind. In 0,1 M wässriger KClO4-Lösung aufgenommene zyklische Voltammogramme an Gold- und Kupferoberflächen, welche mit oben genannten, aromatischen Thiolen beschichtet wurden, legen nahe, dass Adsorptionsschichten von Thiophenol und 1,4-Dithiobenzol eine stärkere Tendenz zum Abschirmen besitzen als andere. Durch das Einbringen von Kupferproben, welche mit genannten aromatischen Thiolen behandelt wurden, in 0,1 M Silbernitrat-Lösung können sehr leicht Silber-Nanodendritstrukturen erhalten werden. Abscheidezeit und Konzentration der Silbernitrat-Lösung haben einen großen Einfluss auf das Wachstum der Silber-Nanodendritstrukturen auf den modifizierten Kupferproben. Diese Silber-Nanodendritstrukturen besitzen eine hohe katalytische Aktivität hinsichtlich der Oxidation von Hydroquinon. Untersuchungen zur Korrosion an polykristallinem Kupfer, welches mit obigen aromatischen Thiolen modifiziert wurde, in 0,1 M Silbernitrate-Lösung ließen vermuten, dass dieses Kupfersubstrat mehr anodisches Verhalten zeigte als reines Kupfer bei ähnlichen Bedingungen. Zyklische Voltammetrie an wie oben behandeltem Kupfer in 0,1M wässriger KClO4-Lösung zeigte, dass die Geschwindigkeit der Kupferauflösung bei diesen Messungen erhöht war gegenüber anderen, in welchen reines Kupfer bei identischen Bedingungen eingesetzt wurde. / It deals with our studies on self-assembled monolayers of aromatic thiols on gold and copper surfaces. Monolayer formation of thiophenol, 4-mercaptophenol, 4-nitrothiophenol, 4-aminothiophenol, 1,4-dithiobenzene, 4-mer¬cap¬to¬pyridine and 2-mercaptopyridine on Au and Cu surfaces was studied and characterized. The blocking behaviour and structural arrange¬ments of these monolayers were evaluated and characterized using electrochemical and spec¬troscopic techniques. Cyclic voltammetry and surface enhanced Raman spectroscopy were extensively used for the study of electron transfer reactions on these SAM modified surfaces. Electrochemical and spectroelectrochemical studies of thiophenol, 4-mercaptophenol, 4-nitrothiophenol, 4-aminothiophenol, 1,4-dithiobenzene, 4-mercaptopyridine and 2-mercaptopyridine monolayers in aqueous solution of 0.1 M KClO4 suggest that these molecules adsorbed to substrate. Cyclic voltammetry of gold and copper covered with these aromatic thiolates recorded in aqueous solution of 0.1 M KClO4 suggests that adlayers of thio¬phenol and 1,4-dithiobenzene exhibit more blocking behavior than the other ones. Silver nanodendritic structures are easily produced by placing copper samples modified with these aromatic thiolates into 0.1 M silver nitrate solution. Deposition time and concentration of silver nitrate solution have great influence on growing up silver nanodendritic structures on the surface of modified copper samples. These silver nanodendritic structures exhibit electrocatalytic activity towards the oxidation of hydroquinone. Corrosion investigation of polycrystalline copper modified with these aromatic thiolates in 0.1 M silver nitrate solution suggest that copper substrate might be more anodic compared to bare copper under identical condition. Cyclic voltammetry of copper modified with these aromatic thiolates suggests that the rate of dissolution copper in aqueous solution of 0.1 M KClO4 is higher than bare copper in the same condition.

This thesis is an investigation of surface morphology and electronic structure of self-assembled monolayers (SAMs) and solid water films deposited on these SAMs using metastable impact electron spectroscopy (MIES) and infrared reflection-absorption spectroscopy (IRRAS). MIES uses electronically excited slow helium atoms which interact exclusively with the outermost surface layer. The results suggested that in the SAMs containing an odd number of carbon atoms the molecular orbitals localized on the terminal methyl groups are more exposed at the surface compared to those with an even number of carbon atoms. It was also established that solid water films are more uniform on a SAM substrate containing an odd number of carbon atoms. Thermal transformation of amorphous solid water to polycrystalline ice was also observed. MIES suggested that the molecular orbital of water attributed to the lone pair on the oxygen atom became less accessible at the surface upon the transformation.

The surface of biomaterials can induce contacting blood to coagulate, similar to the response initiated by injured blood vessels to control blood loss. This poses a challenge to the use of biomaterials as the resulting coagulation can impair the performance of hemocompatible devices such as catheters, vascular stents and various extracorporeal tubings [1], what can moreover cause severe host reactions like embolism and infarction. Biomaterial induced coagulation processes limit the therapeutic use of medical products, what motivates the need for a better understanding of the basic mechanisms leading to this bio-incompatibility [2] in order to define modification strategies towards improved biomaterials [3]. Several approaches for the enhancement of hemocompatible surfaces include passive and active strategies for surface modifications. The materials’ chemical-physical properties like surface chemistry, wettability and polarity are parameters of passive modification approaches for improved hemocompatibility and are the focus of the present work. In the present study self assembled monolayers with different surface functionalities (-COOH, -OH, -CH3) were applied as well as two-component-layers with varying fractions of these, as they allow a defined graduation of surface wettability and charge. The ease of control over these parameters given by these model surfaces enables the evaluation of the influence of specific surface-properties on biological responses. To evaluate the effects of different surface chemistry on initial mechanisms of biomaterial induced coagulation, the surfaces were incubated with protein solution, human plasma, blood cell fractions or fresh heparinised human whole blood. Indicative hemocompatibility parameters were subsequently analysed focusing on protein adsorption, coagulation activation, contact activation (intrinsic/ enhancer pathway), impact of tissue factor (extrinsic/ activator pathway) and cellular systems (blood platelets and leukocytes).

Este trabalho consistiu de estudos da viabilidade da geração e identificação de radicais livres envolvidos em processos oxidativos avançados por via eletroquímica. Para a geração e identificação de radicais livres em eletrodos modificados com organotióis via eletroquímica, escolheu-se uma técnica pouco aplicada para este fim; a espectroscopia de impedância eletroquímica, e o ajuste dos dados experimentais pela proposta de modelos de circuitos equivalentes. O eletrodo de trabalho utilizado (Au) foi caracterizado em meio ácido e básico e diversas monocamadas auto-organizadas conhecidas foram adsorvidas sobre o mesmo e também caracterizadas por esta técnica. Parâmetros importantes como constante dielétrica, capacitância de uma monocamada livre de defeitos e grau de recobrimento foram determinados com êxito. Também foram empregadas moléculas menos utilizadas como modificadoras de eletrodos (fenotiazinas e derivados). As mesmas foram caracterizadas no sistema Au/adsorvente/NaOH, pois, o pH alto garante a formação do radical superóxido e do ânion hidroperóxido. Os mesmos modelos de circuitos equivalentes puderam ser empregados na obtenção dos parâmetros físicos relativos a essas moléculas no sistema eletroquímico utilizado. Em uma etapa subsequente obteve-se a valiosa informação, se as moléculas adsorvidas sobre Au poderiam ser usadas para a geração de superóxido e outros radicais. As monocamadas de tióis, quando utilizadas para gerar radicais livres, se mostraram aptas a gerar superóxido em meio alcalino saturado com oxigênio molecular. Como se demonstrou na etapa de caracterização, as SAM-3 e SAM-6 não formaram um empacotamento totalmente hidrofóbico. Por este motivo, mesmo que superóxido tenha sido gerado, não pôde ser detectado. Já para a fenotiazina e seu metil-derivado, a cinética de adsorção e a utilização de soluções aquosas impediram a formação de um filme completo e homogêneo, imprescindível para a constituição de uma interface hidrofóbica e isolante. Além disso, possíveis reações de complexação entre as moléculas e superóxido, reações entre a fenotiazina cátion-radical e superóxido fazem necessários mais estudos acerca da natureza eletroquímica do sistema, que já é bastante conhecido fotoquimicamente. Posterior a modificação, todos os eletrodos se mostraram ser bastante sensíveis ao pH e aos eletrólitos utlizados, alterando-se a estrutura interna muito facilmente, o qual implica uma limitação no tempo de uso e reprodutibilidade quando da geração de um radical tão reativo quanto superóxido. / This work consisted in testing the viability of investigations into the electrochemical generation and identification of free radicals involved in advanced oxidative processes. In these studies, a technique which is rarely used for the electrochemical generation and identification of free radicals at organothiole-modified electrodes, electrochemical impedancy spectroscopy, was chosen and the experimental data obtained were fitted by equivalent circuit models. A working electrode (Au) was characterized in both acidic and basic media and several known self-assembled monolayers were adsorbed over this electrode and also characterized using this technique. Important parameters such as dielectric constants, capacitance of the monolayers free of defects and coverage were determined with success. Other lesser-known molecules such as phenothiazines and their derivatives were also used .The modified electrodes were characterized in NaOH solution, since the high pH assures the production of superoxide radicals and hydroperoxylate anions. The equivalent circuit model was employed to obtain physical parameters for these molecules in the electrochemical systems studied. In a subsequent step, a valuable piece of information was obtained; it was noted that the molecules adsorbed over Au could be used in order to generate superoxide and other radicals. The ability of thiol monolayers used in the generation of free radicals, to produce superoxides in alkaline media saturated with molecular oxygen was demonstrated. However, characterization of the self-assembled monolayers, SAM-3 and SAM-6, revealed that these were not able to pack in a completely hydrophobic manner. This may account for the fact that the superoxide could not be detected even when it was believed to have formed. For the phenothiazine-modified electrodes, the adsorption kinetics and the utilization of aqueous solutions prevented the formation of an intact and homogeneous film, which is essential in establishing a hydrophobic and isolating interface. Furthermore, possible complexation reactions between the molecules and the superoxide and reactions between the phenothiazine cation-radical and superoxide, point to the need for further studies regarding the electrochemical nature of this system, whose photochemical properties are very well known. Following modification, all the electrodes were shown to be too sensitive to pH and to the electrolytes used, since the inner structure was easily modified, which implies that they would have a limited time of use and in addition that the reproducibility of the rate of generation of reactive radical species such as superoxides could be compromised.