No description available.

No description available.

Universiẗat, Diss., 2001--Dortmund.

L’analyse protéomique est une méthode de choix pour la recherche de biomarqueurs. Sans à priori, elle permet d’établir un catalogue de protéines qui sont exprimées dans une cellule, un tissu ou un organisme entier. Cette approche a été mise en œuvre pour une analyse protéomique de cellules coliques cancéreuses et une analyse phosphoprotéomique de biopsies hépatiques.L’étude de cellules coliques cancéreuses transformées par le gène cytosine désaminase et traitées par la prodrogue 5-fluorocytosine a été réalisée par électrophorèse bidimensionnelle des extraits protéiques. L’analyse d’image a permis la quantification de 353 protéines et isoformes dont 14 sont surexprimées et 4 sous exprimées lors d’un traitement par la prodrogue. Parmi les protéines dont l’expression est affectée par le traitement, l’HSP90 présente un niveau d’expression constant mais est identifiée sous deux formes qui diffèrent par leur pI. L’analyse par spectrométrie de masse à identifier une phosphorylation de ser 254 qui pourrait contribuer à la régression tumorale.Après avoir développé une méthode HPLC-TiO2 pour la purification de phosphopeptides, une analyse protéomique de 24 biopsies humaines provenant de carcinomes hépatocellulaires sur foie non fibreux (nf-CHC) et de tissus sains a été réalisée avec la technologie iTRAQ. Les peptides surexprimés dans les tumeurs correspondent à des protéines de choc thermiques, des protéines liées à l’ADN/ARN (histones, protéines du splicéosome), des protéines de la phase 1 de la détoxification (carboxyestérase, époxide hydrolase), les protéines du cytosquelette (actinine, tubuline), des protéines ou enzymes anti-oxydantes (superoxide dismutase, thiorédoxine). Les peptides sous-exprimés correspondent à des protéines du cycle de l’urée, de la détoxification (alcool déhydrogénase) du métabolisme des sucres, des lipides et des acides aminés. Dans la fraction TiO2, 19 phosphopeptides sont significativement surexprimés et 15 phosphopeptides sont significativement sous exprimés, mettant en en évidence une surreprésentation du motif –(S/T)P- parmi les phosphopeptides surexprimés dans les tumeurs. Une activation des proline directed kinases ou une inhibition des phosphatases correspondantes est donc probablement un événement caractéristique des nf-CHC. Ces peptides/protéines dérégulées sont autant de biomarqueurs potentiels pour le carcinome hépatocellulaire. / Proteomic is a method of choice for biomarker research, without a priori, it establishes a directory of proteins that are expressed in a cell, tissue or an entire organism. This approach has been implemented for proteomic analysis of colon cancer cells and phosphoproteomic analysis of liver biopsies.The study of colon cancer cells transformed by the cytosine deaminase and treated with the prodrug 5-fluorocytosine was performed by two-dimensional electrophoresis. Image analysis allowed the quantification of 353 proteins, 14 isoforms are overexpressed and 4 under expressed during treatment with the prodrug. Among the proteins whose expression is affected by the treatment, HSP90 has a constant level of expression, but is identified in two isoforms that differ in their pI. Mass spectrometry identified phosphorylation of ser 254 which could contribute to tumour regression.After developed an HPLC- TiO2 method for the purification of phosphopeptides, a proteomic analysis of 24 biopsies from human hepatocellular carcinoma on non-fibrous liver (nfCHC) and normal tissue was performed with the iTRAQ technology. Peptides overexpressed in tumours correspond to HSPs, DNA / RNA binding proteins (histones, spliceosome), proteins form Phase 1 detoxification (carboxyesterase, epoxide hydrolase), the cytoskeletal proteins (actinin, tubulin), antioxidant proteins or enzymes (superoxide dismutase, thioredoxin). The under-expressed peptides belong to proteins of the urea cycle, the detoxification (alcohol dehydrogenase) metabolism of sugars, lipids and amino acids. In the TiO2 fraction, 19 phosphopeptides are significantly overexpressed and 15 phosphopeptides were significantly under-expressed. This phosphoproteome has demonstrated an overrepresentation of the (S/T)P pattern among overexpressed phosphopeptides, indicating activation of proline-directed kinases in nfCHC or inhibition of the corresponding phosphatases. These deregulated peptides/proteins are as potential biomarkers for hepatocellular carcinoma.

Glycosylation may be a general strategy for the transport of biologically active neuro(glyco)peptides into the brain. With that in mind, a series of modified DAMGO analogues were synthesized and subjected to conformational analysis, and in vitro and in vivo studies related to opioid analgesia. Those studies will help to determine the balance of carbohydrate and peptide, to reach maximum BBB transport; in other words this is a study to test the biousian hypothesis. 1) The μ-agonist DAMGO was altered by incorporating moieties of increasing water solubility into the C-terminus, including carboxamide and simple glycosides. The hydrophilic C-terminal moieties were varied from glycinol in DAMGO to L-serine amide (LYM100), L-serine amide β-D-xyloside (LYM50), L-serine amide β-Dglucoside (LYM110), L-serine amide β-lactoside (LYM147). Two phosphopeptides LYM1311 and LYM1312 were synthesized with the phosphate group attached to Lserine amide at the C-terminus. Conformational analysis experiments included: 1HNMR, diffusion, variable temperature experiments to find the temperature coefficient, circular dichroism, 2DNMR noesy and tocsy, and molecular modeling. The peptides associate with SDS micelles with a strong electrostatic component. The SDS micelles stabilized the β-turn that is nascent in water. CSI (chemical shift indexes), temperature coefficients and circular dichroism do not give much insight into the structural conformation. 2D NMR analysis followed by molecular modeling confirmed a β-turn preferred conformation. No specific type of β-turn could be assigned to the DAMGO analogs. 2) Antinociceptive mouse tail-flick studies were performed, and opioid binding was determined. Analgesic potency (i.v.) increased, passing through a maximum (A₅₀ ≈ 0.2 μmol/Kg) for LYM100 & LYM50 as membrane affinity vs. water solubility became optimal, and then dropped off (A₅₀ ≈ 1.0 μmol/Kg) for LYM110 & LYM147 as water-solubility dominated the molecular behavior. Correlation of i.v. A₅₀ values with estimated hydrodynamic values (glucose units) for the glycoside moieties, or the hydrophilic/hydrophobic Connolly surface areas (A₅₀ vs e^(-Awater/Alipid)), provided U-shaped or V-shaped curves, as predicted by the “biousian hypothesis.” The μ-selective opioid agonism was maintained upon modifications at the C-terminus. The optimal “degree of glycosylation” that achieves the maximum degree of transport for the DAMGO peptide message seems to be between the peptide with the carboxamide C-terminal group and the xyloside.

No description available.

The method for the study of protein phoshorylation sites was elaborated. This method is based on the IMAC separation of phosphopeptides from protein proteolytic digests using new magnetic sorbents and on their subsequent identification by mass spectrometry (MS). Magnetic non-porous hydrophilic poly(2-hydroxyethyl methacrylate-co-glycidyl methacrylate) particles prepared by the dispersion polymerization and modified with iminodiacetic acid (IDA) with immobilized Fe(III) and Ga(III) ions were employed for the enrichment of phosphopeptides from the proteolytic digests of two model proteins, porcine pepsin A and bovine α-casein. The optimum conditions for phosphopeptide adsorption and desorption in both cases were investigated and compared. The phosphopeptides separated from both proteolytic digests were analyzed by matrix-assisted laser desorption/ionization time-of-flight MS. For the immunochemical separation of phosphoproteins, protein fraction containing antibodies was obtained from egg yolk of hens immunized with O-phosphoryl-L-serine conjugated to key limpet hemocyanin. Antibodies were purified using affinity chromatography on immobilized α-casein and their presence was proven by MS. Specificity of the obtained antibodies was examined using ELISA tests. Obtained results showed, that specificity...

Characterization of phosphoproteins-including detection, identification of phosphoproteins and identification of phosphorylation sites-is mostly done with radiolabeling and proteomic techniques. Three main topics related to phosphoprotein characterization are included in this dissertation. First, large-scale characterization of the CHO (Chinese hamster ovary) cell phosphoproteome was done using two dimensional gel electrophoresis (2DE) separation, visualization of phosphoproteins by radiolabeling or a phosphoprotein specific dye, followed by MALDI-TOF identification. Because radiolabeling of phosphoproteins is very sensitive and straightforward to quantify, such analysis can give a clear picture of the relative phosphosphorylation of proteins present in a sample. But there are also limitations to this approach, such as the inability of 2DE to separate hydrophobic, acidic and large proteins and the poor detection limits of common protein stains such as Coomassie stain. Additionally, it is difficulty to excise the right spots for identification because of the low abundance of phosphoproteins which have been visualized by radiolabeling. Furthermore, there are problems associated with metabolic radiolabeling. A second topic of the dissertation is the development of a novel strong cation exchange monolithic column for MudPIT (multidimensional protein identification technology) and phosphopeptide isolation. This column, a poly(AMPS-co-PEGDA) monolith containing as high as 40% AMPS, has several favorable features, such as high binding capacity, extraordinarily high resolution, and high peak capacity, making it ideal for resolving complex peptide samples. Application of this novel column to isolate model phosphopeptides was shown. More general use of this column in MudPIT (strong cation exchange column followed by reverse-phased MS/MS) is probably somewhat limited, due to the hydrophobicity of the AMPS monomer. A better monolith could be obtained if a more hydrophilic monomer was used. In the third area of the dissertation, several individual protein phosphorylation sites were analyzed, employing different strategies. Phosphorylation sites of one multiply phosphorylated tryptic peptide from CK2-phosphorylated phosducin-like protein (PhLP) was well characterized using enrichment with a MonoTip® TiO Pipette Tip. Analysis of syntaxin 1a phosphorylation by AMPK (AMP-activated protein kinase) was done by peptide level mapping for potential phosphopeptides after its unsuccessful trial with enrichment using the MonoTip® TiO Pipette Tip. Several criteria such as existence of non-phosphorylated forms of potential phosphopeptides, controls and reasonable retention times were used to rule out false positives. Phosphorylation of syntaxin 1a by AMPK was narrowed down to tryptic peptide T32 with evidence from different sources. Three phosphorylation sites of syntaxin 4 by AMPK were identified within the same peptide (Q65QVTILATPLPEESMK80). Further pinpointing of phosphorylation site(s) for syntaxin 1a by AMPK and further confirmation of these phosphorylation sites in syntaxin 4 by AMPK are required in vivo. The role of phosphorylation in syntaxin 4 by AMPK is the next step toward elucidation of AMPK activation and regulation of the glucose uptake mechanism.

v angličtině (English abstract) Tobacco male gametophyte has a strongly dehydrated cytoplasm and represents a metabolically inactive stage. Upon cytoplasm rehydration, pollen grain becomes metabolically active and after the activation is finished, the pollen tube growth through a selected pollen aperture starts. The rehydration together with metabolic activation are accompanied by the regulation of translation and post-translational modifications (mainly phosphorylation) of the existing proteins. In this Ph.D. thesis, there were identified phosphopeptides from tobacco (Nicotiana tabacum) mature pollen, pollen activated in vitro 5 min and pollen activated in vitro 30 min. The total proteins from the above male gametophyte stages were extracted. The protein extract was trypsinized and the acquired peptide mixture was enriched by MOAC (metal oxide/hydroxide affinity chromatography) with titanium dioxide matrix. The enriched fraction was subjected to liquid chromatography coupled with tandem mass spectrometry (LC- MS/MS). Totally, there were identified 471 phosphopeptides, carrying 432 exactly localized phosphorylation sites. The acquired peptide identifications were mapped to 301 phosphoproteins that were placed into 13 functional categories, dominant of which were transcription, protein synthesis,...

O presente trabalho avaliou o efeito in situ de uma goma de mascar comercialmente disponível contendo caseína fosfopeptídea - fosfato de cálcio amorfo (CPP-ACP) na erosão dentária. Para a primeira etapa do estudo (capacidade remineralizadora) utilizaram-se 72 blocos de esmalte humano selecionados pela dureza de superfície (SHi) e erodidos in vitro pela imersão em Coca Cola®, pH 2,4 por 3 min (avaliação da dureza - SHd). Os blocos foram randomizados entre os grupos: GI Trident Fresh® (sem CPP-ACP), GII controle (sem chiclete) e GIII Trident Total® (com CPPACP). Doze voluntários utilizaram dispositivos intrabucais palatinos por 24 h em 3 fases cruzadas. Nas fases de GI e GIII os voluntários mascaram um chiclete (30 min) e em todas as fases após 2h, a dureza foi avaliada (SHf1). Os blocos foram reposicionados e os dispositivos usados por mais 22 h (+ 3 ciclos de mastigação de chiclete - GI e GIII). A dureza foi reavaliada (SHf2) para cálculo do percentual de recuperação de dureza (%SHR) após 2 e 24h. Na segunda etapa do estudo (ciclagem erosiva) 48 blocos de esmalte humano hígidos foram aleatorizados entre os grupos (GI, GII e GIII) e 8 voluntários utilizaram dispositivos intrabucais palatinos em fases cruzadas de 7 dias cada (washout de 7 dias). O protocolo de ciclagem erosiva foi de 4 imersões diárias do dispositivo intrabucal em 150 ml de Coca Cola® durante 5 min. Nos grupos I e III após cada desafio erosivo e reinserção do dispositivo na cavidade bucal, os voluntários mascaram um chiclete durante 30 min. A alteração da superfície do esmalte foi mensurada por perfilometria (&#x3BC;m). Os dados foram submetidos à ANOVA (2 critérios - etapa 1; 1 critério - etapa 2) e teste Tukey (&#x3B1;=0,05). Os resultados da recuperação de dureza demonstraram haver diferença significativa entre os grupos e os tempos (p<0,05). O Trident Total® (2h = 50,0%; 24h = 95,9%) promoveu maior recuperação de dureza que o Trident Fresh® (2h= 30,0%; 24h= 71,1%) e o grupo controle (2h = 15,7%; 24h = 40,9%). No desafio erosivo prolongado, o Trident Total® (5,2± 2,8 &#x3BC;m) e o Trident Fresh® (3,8 ± 1,5 &#x3BC;m) reduziram significativamente o desgaste dentário em relação ao grupo controle (6,8 ± 3,5 &#x3BC;m), no entanto, não houve diferença significativa entre os chicletes (p>0,05). Conclui-se que o efeito remineralizador da saliva foi maior após utilização de goma de mascar, sendo significativamente aumentado em função do período de remineralização e pela presença de CPP-ACP na goma de mascar. Contudo, para o protocolo de desafio erosivo adotado, apesar da goma de mascar convencional apresentar efeito na inibição do desgaste erosivo, o comportamento da goma de mascar com incorporação de CPP-ACP foi similar. / This study evaluated the in situ effect of a commercial chewing gum containing casein phosphopeptide - amorphous calcium phosphate (CPP-ACP) on dental erosion. On the first stage (remineralizing effect) 72 human enamel blocks, which were selected by surface hardness (SHi) and eroded in vitro by immersion in cola drink, pH 2,4 for 3 minutes (hardness evaluation - SHd) were used. Blocks were randomized into 3 groups: GI Trident Fresh® (conventional gum, without CPP-ACP), GII control (no gum) and GIII Trident Total® (with CPP-ACP). Twelve volunteers wore intraoral palatal devices for 24 h in 3 crossover phases. In phases of GI and GIII volunteers chewed a gum (30 min) and in all phases after 2h, the surface hardness was evaluated (SHf1). The blocks were reinserted and the devices used for additional 22h (+ 3 cycles of chewing gum - GI e GIII). The surface hardness was reassessed (SHf2) to calculate the percentage of surface hardness recovery (%SHR) after 2 and 24h. In the second stage (erosive cycling) 48 healthy human enamel blocks were randomized between groups (GI, GII and GIII) and 8 volunteers wore intraoral palatal devices in crossover phases of 7 days each (washout of 7 days). The cycling protocol consisted of 4 daily immersions of the intraoral device into 150 ml of cola drink for 5 min. In groups I and III after each erosive challenge and oral device reinsertion into oral cavity, the volunteers chewed a gum for 30 min. The enamel surface alterations were measured by profilometry (&#x3BC;m). Data were analyzed by Anova (Two way - stage 1, One way - stage 2) and Turkeys test (&#x3B1;=0,05). The results of percentage of surface hardness recovery showed significant differences for factors groups and time (p<0.05). Trident Total® (2h = 50.0%; 24h = 95.9%) showed higher percentage of surface hardness recovery than the Trident Fresh® (2h = 30.0%; 24h = 71.1%) and control group (2h = 15.7% 24h = 40.9%). In the prolonged erosive challenge, Trident Total® (5.2 ± 2.8 &#x3BC;m) and Trident Fresh® (3.8 ± 1.5 µm) significantly reduced tooth wear compared to control group (6.8 ± 3, 5 µm). However, there was no significant difference between chewing gums. It is concluded that the saliva remineralizing effect increased after the use of conventional chewing gum and was enhanced by prolonged period of remineralization and by the presence of CPPACP in the chewing gum. However for the adopted erosive challenge, despite the conventional chewing gum being able to diminish erosive wear, the chewing gum containing CPP-ACP showed similar effect.