Thesis (Ph.D.)--Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences and the Woods Hole Oceanographic Institution), 2000. / Includes bibliographical references (p. 284-290). / by Brian Kenneth Arbic. / Ph.D.

Thesis (Ph.D.)--Joint Program in Physical Oceanography (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences and the Woods Hole Oceanographic Institution), 2000. / Includes bibliographical references (p. 217-222). / Estimation of the upper ocean heat budget from one year of observations at a moored array in the north central Arabian Sea shows a rough balance between the horizontal advection and time change in heat when the one-dimensional balance between the surface heat flux and oceanic heat content breaks down. The two major episodes of horizontal advection, during the early northeast (NE) and late southwest (SW) monsoon seasons, are both associated with the propagation of mesoscale eddies. During the NE monsoon, the heat fluxes within the mixed layer are not significantly different from zero, and the large heat flux comes from advected changes in the thermocline depth. During the SW monsoon a coastal filament exports recently upwelled water from the Omani coast to the site of the array, 600 km offshore. Altimetry shows mildly elevated levels of surface eddy kinetic energy along the Arabian coast during the SW monsoon, suggesting that such offshore transport may be an important component of the Arabian Sea heat budget. The sea surface temperature (SST) and mixed layer depth are observed to respond to high frequency (HF, diurnal to atmospheric synoptic time scales) variability in the surface heat flux and wind stress. The rectified effect of this HF forcing is investigated in a three-dimensional reduced gravity thermodynamic model of the Arabian Sea and Indian Ocean. Both the HF heat and wind forcing act locally to increase vertical mixing in the model, reducing the SST. Interactions between the local response to the surface forcing, Ekman divergences, and remotely propagated signals in the model can reverse this, generating greater SSTs under HF forcing, particularly at low latitudes. The annual mean SST, however, is lowered under HF forcing, changing the balance between the net surface heat flux (which is dependent on the SST) and the meridional heat flux in the model. A suite of experiments with one-dimensional upper ocean models with different representations of vertical mixing processes suggests that the rectified effect of the diurnal heating cycle is dependent on the model, and overstated in the formulation used in the three-dimensional model. / by Albert Sok Fischer. / Ph.D.

Le climat de la Terre dépend en grande partie des échanges énergétiques entre les masses d’eau chaudes et froides de nos océans. Afin de prédire et de comprendre les variations de notre climat, les modèles numériques globaux de l’océan doivent pouvoir déterminer quelle fraction d'énergie est convertie en mélange irréversible dans un écoulement turbulent et stablement stratifié. Il apparaît que cette fraction est sensible aux paramètres de l’écoulement, ce qui a récemment conduit les océanographes à remettre en question la paramétrisation d'Osborn pour le coefficient de diffusion turbulente kz, qui utilise une efficacité de mélange constante et fixée à ŋ=0,17. Ceci nous a poussé à réaliser au laboratoire de Mécanique des Fluides et d'Acoustique (LMFA) des mesures conjointes de ŋ et kz, afin de mieux comprendre leur inter-dépendance. Cette étude est avant tout expérimentale et se base sur plusieurs dispositifs permettant de quantifier le mélange dans différents types d'écoulement. Trois de ses expériences ont été réalisées au LMFA : une expérience de lock-exchange dans laquelle le mélange est issu du cisaillement à l'interface de deux courants de gravité se déplaçant en sens opposés, une expérience de grille tractée dans un fluide stratifié et une expérience d’injection de stratification dans la grille d’un canal hydraulique. Ce travail a été complété, d'une part par une collaboration sur la plateforme Coriolis du LEGI à Grenoble, permettant d’atteindre de plus grands nombres de Reynolds ; et d'autre part par une campagne de mesure in situ dans le fjord du Saguenay au Canada en collaboration avec l'ISMER, visant à estimer le mélange turbulent conduisant au renouvellement des eaux profondes du fjord, à partir de l'analyse de transects successifs de densité. Dans ces différentes configurations, l'évolution temporelle des profils verticaux de densité ont permis d'analyser la dépendance du coefficient de diffusion turbulente et de l'efficacité de mélange avec les nombres de Reynolds et de Froude. Nos résultats ont permis de quantifier la décroissance de l'efficacité de mélange avec l'augmentation du nombre de Froude dans un écoulement turbulent, ainsi que la sensibilité du coefficient de diffusion turbulente aux nombres de Froude et de Reynolds de flottabilité. L'utilisation de trois dispositifs expérimentaux différents permet de montrer qu'au-delà de ces lois dites universelles, la variabilité propre à chaque géométrie influence fortement les valeurs de l'efficacité de mélange. Ceci est particulièrement mis en lumière dans la configuration de lock-exchange, pour laquelle la valeur limite de ŋ=0.25 prédite par la physique statistique n'est atteinte que dans une configuration fortement tri-dimensionnelle, jusqu'alors peu utilisée dans la littérature. Enfin, toutes les méthodes d'analyse développées pour les expériences de laboratoire ont pu être utilisées pour l'analyse des données in situ, permettant de clore ce travail de thèse sur une étude environnementale. / Our climate partly depends on energy exchange between warm and cold water masses in the ocean's interior. In order to understand and forecast the climate variations, numerical models of the ocean must estimate the amount of energy converted into irreversible mixing in turbulent stably stratified flows. It seems that this quantity depends on the flow parameters. This assertion challenges the famous Osborn model for turbulent diffusivity kz which uses a fixed mixing efficiency of ŋ=0.17. This motivated us to measure separately kz and ŋ in order to obtain a better understanding of their inter-dependencies. The present work is an experimental study based on set-ups which enable to quantify the mixing in different types of flow. Three of those experiments are held in our lab (LMFA) and consist respectively in a lock-exchange experiment where mixing is generated by the shear at the interface of two opposite gravity currents, a stratified towed grid experiment, and a hydraulic channel experiment where the stratification is injected directly by the grid. This study has been complemented with two international collaborations. The first one, on the Coriolis platform (LEGI) consisted in a stratified towed grid experiment in a rotating tank allowing to broaden our parameter spectrum. The second one is a series of in situ measurements led in collaboration with ISMER in the Saguenay fjord (Canada) aiming at measuring density transects over time in order to quantify the turbulent mixing that participates in the renewal of the fjord's deep water. In all of those configurations, dependencies of mixing efficiency and turbulent diffusivity along with the Froude and the Reynolds numbers are extracted from the time evolution of density profiles. In our results, we were able to quantify the decay of the mixing efficiency with the increase of the Froude number. We also highlighted the sensitivity of turbulent diffusivity on the buoyancy Reynolds number. We used three different experimental setups to show that beyond the so called universal turbulence laws, the flow geometry has a huge impact on the mixing efficiency values. This is especially true in the lock-exchange configuration where the asymptotic value of ŋ=0.25, predicted by statistical physics, can only be reached in a set-up which allows 3D flows. Such investigations are still scarce in the literature. Finally, all the data analysis methods developed for the lab experiments were of great help for the analysis of in situ data and thereby enabled us to consider a real-life environnemental flow.

This thesis presents a numerical exploration of the dynamics governing rotating flow driven by a surface stress in the " sliced cylinder " model of Pedlosky & Greenspan (1967) and Beardsley (1969), and its close relative, the " sliced cone " model introduced by Griffiths & Veronis (1997). The sliced cylinder model simulates the barotropic wind-driven circulation in a circular basin with vertical sidewalls, using a depth gradient to mimic the effects of a gradient in Coriolis parameter. In the sliced cone the vertical sidewalls are replaced by an azimuthally uniform slope around the perimeter of the basin to simulate a continental slope. Since these models can be implemented in the laboratory, their dynamics can be explored by a complementary interplay of analysis and numerical and laboratory experiments. ¶ In this thesis a derivation is presented of a generalised quasigeostrophic formulation which is valid for linear and moderately nonlinear barotropic flows over large-amplitude topography on an f-plane, yet retains the simplicity and conservation properties of the standard quasigeostrophic vorticity equation (which is valid only for small depth variations). This formulation is implemented in a numerical model based on a code developed by Page (1982) and Becker & Page (1990). ¶ The accuracy of the formulation and its implementation are confirmed by detailed comparisons with the laboratory sliced cylinder and sliced cone results of Griffiths (Griffiths & Kiss, 1999) and Griffiths & Veronis (1997), respectively. The numerical model is then used to provide insight into the dynamics responsible for the observed laboratory flows. In the linear limit the numerical model reveals shortcomings in the sliced cone analysis by Griffiths & Veronis (1998) in the region where the slope and interior join, and shows that the potential vorticity is dissipated in an extended region at the bottom of the slope rather than a localised region at the east as suggested by Griffiths & Veronis (1997, 1998). Welander's thermal analogy (Welander, 1968) is used to explain the linear circulation pattern, and demonstrates that the broadly distributed potential vorticity dissipation is due to the closure of geostrophic contours in this geometry. ¶ The numerical results also provide insight into features of the flow at finite Rossby number. It is demonstrated that separation of the western boundary current in the sliced cylinder is closely associated with a " crisis " due to excessive potential vorticity dissipation in the viscous sublayer, rather than insufficient dissipation in the outer western boundary current as suggested by Holland & Lin (1975) and Pedlosky (1987). The stability boundaries in both models are refined using the numerical results, clarifying in particular the way in which the western boundary current instability in the sliced cone disappears at large Rossby and/or Ekman number. A flow regime is also revealed in the sliced cylinder in which the boundary current separates without reversed flow, consistent with the potential vorticity " crisis " mechanism. In addition the location of the stability boundary is determined as a function of the aspect ratio of the sliced cylinder, which demonstrates that the flow is stabilised in narrow basins such as those used by Beardsley (1969, 1972, 1973) and Becker & Page (1990) relative to the much wider basin used by Griffiths & Kiss (1999). ¶ Laboratory studies of the sliced cone by Griffiths & Veronis (1997) showed that the flow became unstable only under anticyclonic forcing. It is shown in this thesis that the contrast between flow under cyclonic and anticyclonic forcing is due to the combined effects of the relative vorticity and topography in determining the shape of the potential vorticity contours. The vorticity at the bottom of the sidewall smooths out the potential vorticity contours under cyclonic forcing, but distorts them into highly contorted shapes under anticyclonic forcing. In addition, the flow is dominated by inertial boundary layers under cyclonic forcing and by standing Rossby waves under anticyclonic forcing due to the differing flow direction relative to the direction of Rossby wave phase propagation. The changes to the potential vorticity structure under strong cyclonic forcing reduce the potential vorticity changes experienced by fluid columns, and the flow approaches a steady free inertial circulation. In contrast, the complexity of the flow structure under anticyclonic forcing results in strong potential vorticity changes and also leads to barotropic instability under strong forcing. ¶ The numerical results indicate that the instabilities in both models arise through supercritical Hopf bifurcations. The two types of instability observed by Griffiths & Veronis (1997) in the sliced cone are shown to be related to the western boundary current instability and " interior instability " identified by Meacham & Berloff (1997). The western boundary current instability is trapped at the western side of the interior because its northward phase speed exceeds that of the fastest interior Rossby wave with the same meridional wavenumber, as discussed by Ierley & Young (1991). ¶ Numerical experiments with different lateral boundary conditions are also undertaken. These show that the flow in the sliced cylinder is dramatically altered when the free-slip boundary condition is used instead of the no-slip condition, as expected from the work of Blandford (1971). There is no separated jet, because the flow cannot experience a potential vorticity " crisis " with this boundary condition, so the western boundary current overshoots and enters the interior from the east. In contrast, the flow in the sliced cone is identical whether no-slip, free-slip or super-slip boundary conditions are applied to the horizontal flow at the top of the sloping sidewall, except in the immediate vicinity of this region. This insensitivity results from the extremely strong topographic steering near the edge of the basin due to the vanishing depth, which demands a balance between wind forcing and Ekman pumping on the upper slope, regardless of the lateral boundary condition. The sensitivity to the lateral boundary condition is related to the importance of lateral friction in the global vorticity balance. The integrated vorticity must vanish under the no-slip condition, so in the sliced cylinder the overall vorticity budget is dominated by lateral viscosity and Ekman friction is negligible. Under the free-slip condition the Ekman friction assumes a dominant role in the dissipation, leading to a dramatic change in the flow structure. In contrast, the much larger depth variation in the sliced cone leads to a global vorticity balance in which Ekman friction is always dominant, regardless of the boundary condition.

Submitted by Caroline Falcao (caroline.rfalcao@ufpe.br) on 2017-05-22T17:45:56Z No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) TESE FINAL Carlos Geraldo-PPGO.pdf: 10438439 bytes, checksum: 846645d0ef9edecba48513889f2c3692 (MD5) / Made available in DSpace on 2017-05-22T17:45:56Z (GMT). No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) TESE FINAL Carlos Geraldo-PPGO.pdf: 10438439 bytes, checksum: 846645d0ef9edecba48513889f2c3692 (MD5) Previous issue date: 2014-09-29 / O campo magnético é uma fonte acessível de informação direcional passível de ser utilizada pelos seres vivos para orientação e navegação. Animais como mamíferos, aves, peixes, répteis marinhos, anfíbios, moluscos, insetos e crustáceos são sensíveis ao campo geomagnético. O presente estudo enfocou uma avaliação do efeito do campo magnético sobre peixes e crustáceos marinhos em condições naturais (área costeira) e sobre camarões Litopennaeus vannamei em condições controladas (laboratório). Os experimentos com peixes e crustáceos em condições naturais consistiram de sete a oito pescarias independentes, empregando-se armadilhas tipo covo distribuídos em cinco grupos de três a quatro unidades. Magnetos permanentes de 2000 Gauss em um raio de 2m foram fixados próximos à abertura de seis dos dezesete covos empregados. Ao final de cada pescaria os peixes e crustáceos capturados em cada covo foram identificados e contabilizados. Os níveis de capturas de peixes e crustáceos foram significativamente mais elevados nos covos com magneto. Dezessete espécies de crustáceos estiveram presentes nas capturas com os covos, dentre as quais as duas espécies mais frequentes foram Coryrhynchus riisei e Stenorhynchus seticornis. Trinta e duas espécies de peixes ocorreram nas capturas com os covos, com a espécie Haemulon aurolineatum (Xira branca) apresentando uma frequência de ocorrência uma a duas ordens de magnitude superior as demais espécies capturadas, principalmente nos covos com magneto. Ante este resultado, otólitos e tecidos da linha lateral, mancha ocelar, narina e área abdominal (controle) foram extraídos de cinco indivíduos jovens e de cinco indivíduos adultos de H. aurolineatum para investigar a presença de material magnético nessas estruturas. As amostras foram coletadas de indivíduos recém-capturados, secas em estufa e submetidas a medidas de ressonância ferromagnética (RFM) com uso de um espectrômetro Bruker ESP300E. Os espectros obtidos indicaram presença de material magnético nos otólitos, narinas e mancha ocelar e ausência de material magnético nos tecidos da área abdominal de todos os espécimes analisados. Nas amostras da linha lateral, a presença de material magnético pareceu estar relacionada ao desenvolvimento ontogenético, tendo sido detectado principalmente em espécimes adultos. Os experimentos em condições controladas foram realizados com camarões Litopenaeus vannamei considerando-se sexos e fases do seu ciclo ontogenético (machos e fêmeas adultos; machos e fêmeas juvenis e pós-larvas). Um par de bobinas circulares na configuração de Helmholtz, conectada a uma fonte regulável, foi empregado para a geração de diferentes intensidades (0, 25, 30, 35 e 40 μT) de campo magnético artificial uniforme. Os testes foram realizados de forma acumulativa e não acumulativa. No primeiro caso, um mesmo grupo de 15 camarões foi sequencialmente submetido aos cinco níveis de intensidade de campo magnético, com um intervalo de 24h entre exposições. No segundo caso, empregando- se novos grupos de 15 camarões para cada nível de exposição. Todos os testes foram realizados em triplicata. Os resultados evidenciaram a redução da atividade do L. vannamei quando expostos a campos de 35μT e 40 μT e sua paralisia total a campo de 40μT, assim como a preferência na ocupação do polo sul por fêmeas e machos adultos e juvenis e do polo norte por pós-larvas. / The magnetic field is a handy source of directional information that can be used by living things for orientation and navigation. Animals such as mammals, birds, fishes, marine reptiles, amphibians, molluscs, insects and crustaceans are sensitive to the geomagnetic field. The present study focused on an evaluation of the response of marine fishes and shellfishes subjected to an artificial magnetic field under natural conditions (coastal area) and under controlled conditions (laboratory). The experiments with fishes and crustaceans in natural conditions consisted of seven to eight independent fisheries employing creels traps distributed into five groups of three to four units. Permanent magnets of 2000 Gauss in a 2m radius were tied next to the opening of six of the seventeen creels employees. At the end of each fishery, fish and crustaceans caught in each trap were identified and accounted for. The levels of catches of fish and crustaceans were significantly higher in creels with magnet. Seventeen species of crustaceans were present in the catches with the creels, among which the two species most frequently were Coryrhynchus riisei and Stenorhynchus seticorni. Thirty-two species of fish were present in the catchs with the creels. The frequence of occurrence of the speciie Haemulon aurolineatum (Tomtate grunt) was one to two orders of magnitude higher than the other species caught, mainly in creels with magneto. Given this results, Otoliths and tissues of the lateral line, ocelar spot, nostril and abdomen (control) were extracted from five young individuals and five adult individuals of H. aurolineatum to investigate the presence of magnetic material in these structures. The samples were collected from newly captured individuals, oven-dried and subjected to measures of ferromagnetic resonance (RFM) using a Bruker ESP300E spectrometer. The spectra obtained indicated presence of magnetic material in otoliths, nostrils and ocelar spot and absence of magnetic material in the tissues of the abdominal area of all specimens examined. In the samples of the lateral line, the presence of magnetic material seems to be related to the ontogenetic development, having been detected mainly among adult specimens. The experiments under controlled conditions were performed with the shrimp Litopenaeus vannamei considering different sexes and stages of their ontogenetic cycle (adult males and females; juvenils males and females and post-larvae). A pair of circular coils in Helmholtz configuration, connected to an adjustable power source was used to generate different intensities (0, 25, 30, 35 and 40 μT) of uniform artificial magnetic field. The tests were carried out in accumulative and non accumulative manners. In the first case, a group of 15 shrimps was sequentially exposed to the five levels of magnetic field intensity, with a 24 hours interval between exposures. In the second case, using new groups of 15 shrimps for each level of exposure. All tests were performed in triplicate. The results showed a reduction in activity of L. vannamei when exposed to fields of 35 μT and higher and their total paralysis to levels of 40 μT, as well as the preference in the occupation of the South Pole by females and males juvenils and adults and of the North Pole by post-lavae.