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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
171

Analyse et modélisation des effets des pratiques culturales sur les épidémies de mildiou de la pomme de terre. Adaptation du modèle SIPPOM (Simulator for Integrated Pathogen POpulation Management) au pathosystème / Analysis and modelling of the effects of cropping practices on epidemics of potato late blight. Adaptation of the model SIPPOM (Simulator for Integrated Pathogen POpulation Management) to the pathosystem

Rakotonindraina, Toky Fanambinana 14 December 2012 (has links)
Le mildiou de la pomme de terre, causé par l'agent pathogène Phytophthora infestans est l'une des maladies les plus préjudiciables de la culture. Jusqu'à présent, la lutte chimique reste le moyen de contrôle le plus utilisé pour la maîtriser, classant la pomme de terre au premier rang en termes d'Indices de Fréquence de Traitement en grande culture. Par ailleurs, l'utilisation de variétés résistantes, comportant notamment des gènes de résistances spécifiques, a également démontré son efficacité pour limiter les dégâts engendrés par cette maladie. Mais leur efficacité est peu durable avec une durée moyenne de 4 ans avant l'apparition du phénomène de contournement par les isolats plus virulents. Il est donc nécessaire de développer des stratégies de contrôle de la maladie en combinant un ensemble d'approches génétiques, culturales, physiques, et chimiques afin de satisfaire au mieux les objectifs agronomiques, environnementaux et socio-économiques. Un modèle, nommé SIPPOM (Simulator for Integrated Pathogen POpulation Management), avait été développé dans le cas de la gestion durable du phoma du colza. Le présent travail a consisté à adapter la structure générique de SIPPOM au cas de la gestion intégrée du mildiou de la pomme de terre en développant des modules spécifiques à partir de modèles préexistants ou développés spécifiquement. Un modèle de culture (Spudgro), un modèle épidémiologique (Guntz-Divoux / Milsol), un modèle de nuisibilité (modèle de Shtienberg) et une fonction de dispersion (modèle de Scherm) ont été identifiés dans la littérature, adaptés et intégrés dans la structure générique de SIPPOM. Cet ensemble de modules a donné lieu à la réalisation du premier prototype opérationnel de la version informatisée de SIPPOM-de-terre sur la plate-forme de modélisation RECORD. Un nouveau modèle, appelé VOLPONE, a été développé pour représenter les dynamiques de repousses de pomme de terre dans une parcelle et sur un tas de déchets. Ce modèle permet de représenter les sources d'inoculum primaire à l'échelle du territoire sous l'influence du climat et des pratiques agricoles. La qualité prédictive du modèle de nuisibilité a été estimée à partir d'un jeu de données expérimentales générées au cours du travail de thèse et s'est montrée correcte. Des exemples de résultats issus de simulations réalisées à l'aide du premier prototype montrent la capacité du modèle, en fonction d'une combinaison de pratiques culturales et de conditions climatiques variables, à prédire la dynamique épidémique de la maladie, ainsi que les dégâts et dommages associés à l'échelle de la parcelle ou sur un parcellaire simple. Néanmoins, d'autres tâches restent à accomplir afin de disposer d'une version achevée de SIPPOM-de-terre sur la plate-forme RECORD. Le travail réalisé illustre la généricité du modèle d'origine SIPPOM et contribue à la production de connaissances et de références permettant l'optimisation d'outils existants tels Mileos®. Les avancées réalisées pourront contribuer à la conception de stratégies de gestion intégrée, collectives et durables pour cette maladie. / Potato late blight caused by the pathogen Phytophthora infestans is one of the most dreaded diseases to this culture. So far, chemical control is the most widespread method used against the pathogen. In turn, the amount of fungicides used to control this disease makes potato the crop with the highest Treatment Frequency Index of all arable crops. The use of resistant varieties, including specific resistance genes, has also demonstrated an effective limitation of injuries that this disease can cause. Still, specific resistances lack durability as there is an average span of 4 years before the emergence of a resistance breakdown phenomenon by more virulent strains. It is therefore necessary to develop control strategies that combine a set of methods (genetic, cultural, physical and chemical) to meet agronomic, environmental and socio-economic criteria. A model named SIPPOM (Simulator for Integrated Pathogen POpulation Management), was developed to address these issues for the control of phoma stem canker on oilseed rape. The present work consisted in adapting the generic structure of SIPPOM for the integrated control of potato late blight by designing specific sub-models using existing models or specifically developed models. A crop model (Spudgro), an epidemiologic model (Guntz-Divoux/Milsol), a damage model (Shtienberg's model) and a dispersal function (Scherm's model) were selected in the literature, adapted, and embedded in SIPPOM's generic structure. This set of sub-models led to an operational prototype of SIPPOM-de-terre under the RECORD modelling platform. A new model, named VOLPONE, was designed to simulate potato volunteer dynamics in a field or on a waste pile. This model permits to simulate inoculum sources at the territory scale under the influence of climate and cropping practices. The predictive quality of the damage model was assessed with data generated in specific field experimentations and proved to be good. Simulation examples produced with the first prototype of SIPPOM-de-terre illustrate the capacity of the model to represent epidemiological dynamics at the field scale or at a small regional scale under the influence of cropping practices and climate. However, further work is required before to totally achieve the design and the implementation of SIPPOM-de-terre under the modelling platform RECORD. The conducted study illustrates the genericity of the model SIPPOM and produced knowledge, references and tools for the integrated management of the disease. The outputs of this work will help design integrated, collective and durable control strategies of potato late blight.
172

The effects of Phytophthora ramorum stem inoculation on aspects of tanoak physiology and xylem function in saplings and seedlings

Stamm, Elizabeth A. 16 March 2012 (has links)
Phytophthora ramorum, an oomycete plant pathogen, is the causal agent of sudden oak death, a serious disease of Fagaceous trees in California and Oregon over the last decade. Tanoak (Notholithocarpus densiflorus) is one of the most susceptible host species, but the cause of host mortality is poorly understood. Previous research has implicated disruption in stem water transport, phloem girdling, and activity of a class of secreted proteins known as elicitins as possible mechanisms of pathogenesis. In this study I investigated certain physiological impacts of P. ramorum infection on tanoak saplings and tanoak seedlings. In growth chamber experiments, stems of plants were inoculated with isolates that differed in the amount of elicitin secreted in vitro. Stem-wounded, non-inoculated plants served as controls. Parameters measured included net photosynthetic rate, stomatal conductance, whole plant water usage, stem specific hydraulic conductivity, tylosis production, starch partitioning, and mortality. Inoculated saplings exhibited a reduction in whole plant water usage, followed by a reduction in stem specific hydraulic conductivity implicating an interruption in stem water transport as the primary symptom. A reduction in net photosynthetic rate and stomatal conductance occurred one week later. Experiments conducted on inoculated tanoak seedlings supported the hypothesis that a reduction in stem water transport is the primary disease symptom. Stem specific hydraulic conductivity was the only parameter that appeared to be significantly impacted when treatments were compared during each measurement period. There was, however, a significant difference between treatments over the course of the entire experiment. Due to differences in isolate growth rates and similar levels of elicitin secretion, symptom expression could not be tied to elicitin production. To determine where elicitins are produced in planta, an immunolabeling technique was tested utilizing an elicitin-specific fluorescent antibody. The elicitin protein was most apparent in paratracheal parenchyma cells, although nonspecific staining in control samples confounded interpretation. / Graduation date: 2012
173

Port-Orford-cedar and Phytophthora lateralis : grafting and heritability of resistance in the host, and variation in the pathogen

McWilliams, Michael G. 06 June 2000 (has links)
Port-Orford-cedar (Chamaecyparis lawsoniana) is a forest tree native to a small area of Oregon and California. A root disease caused by Phytophthora lateralis causes widespread mortality of Port-Orford-cedar. This dissertation examines three important elements of the Port-Orford-cedar P. lateralis pathosystem related to breeding for disease resistance: use of resistant rootstocks to maintain genotypes of Port-Orford-cedar for breeding; the heritability and genetic basis of disease resistance; and variability in virulence and DNA fingerprint among a sample of P. lateralis isolates. Port-Orford-cedar was reciprocally grafted to western redcedar (Thuja plicata), incense cedar (Calocedrus decurrens), and Alaska yellow-cedar (Chamaecyparis nootkatensis). Port-Orford-cedar scion graft success was moderate with western redcedar and incense cedar, but extreme overgrowth of the rootstock by the scion indicated incompatibility. Xylem union was good, but phloem union was incomplete or lacking. Nearly all Port-Orford-cedar rootstocks and seedlings exposed to P. lateralis died of root disease. Four percent of the Alaska yellow-cedar exposed also died, confirming this tree as a host for P. lateralis. Resistance of Port-Orford-cedar to P. lateralis is rare. A small number of trees have been identified exhibiting resistance. A number of families were tested to determine the genetic basis for resistance. Estimates of narrow-sense and family mean heritability of resistance, as exhibited by restriction of lesion length after inoculation, were determined. Both narrow-sense and family mean heritabilities were between 0.61 and 0.98 in most tests. Between 21% and 32% of the variance was due to differences among families. Thirteen isolates of P. lateralis were collected from three hosts throughout the geographic range of the fungus. Variation in growth rate on artificial media at three temperatures, virulence when used to inoculate Port-Orford-cedar, and DNA fingerprint were compared. There were significant differences in growth rate among isolates at 24C, but fewer differences at lower temperatures and on a rich medium. One isolate produced significantly shorter lesions in three different inoculation tests. Isolates differed at only two of 189 bands produced by Inter Simple Sequence Repeat (ISSR) DNA primers, indicating very little genetic variation among isolates. / Graduation date: 2001
174

Diagnosis of root-infecting Phytophthora spp. /

Olsson, Christer H. B., January 1900 (has links) (PDF)
Diss. (sammanfattning) Uppsala : Sveriges lantbruksuniv. / Härtill 4 uppsatser.
175

Desempenho agronômico e marcha de absorção de nutrientes em plantas de pimentão (Capsicum annuum L.) enxertadas em porta-enxertos resistentes a patógenos de solo

Santos, Haydée Siqueira [UNESP] 22 August 2005 (has links) (PDF)
Made available in DSpace on 2014-06-11T19:32:26Z (GMT). No. of bitstreams: 0 Previous issue date: 2005-08-22Bitstream added on 2014-06-13T20:04:00Z : No. of bitstreams: 1 santos_hs_dr_botfca.pdf: 1546408 bytes, checksum: d25b46b4f52200f204737b84f9ba16ae (MD5) / Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) / Avaliou-se a produtividade, o acúmulo e a exportação de nutrientes por plantas de pimentão (Capsicum annuum L.) enxertadas e não enxertadas, cultivadas sob ambiente protegido. O experimento foi conduzido de agosto de 2003 a maio de 2004 na Escola Técnica Estadual Augusto Tortolero Araújo pertencente ao Centro Estadual de Educação Tecnológica Paula Souza, em Paraguaçu Paulista, SP. Os porta-enxertos utilizados, AF 2638 e AF 2640, possuem resistência à Phytophthora capsici Leonian e Meloidogyne incognita raça 2. Os tratamentos constaram dos híbridos 'Rúbia R' e 'Margarita' sem enxertar, enxertados sobre os dois porta-enxertos e enxertados neles mesmos. O delineamento experimental foi em blocos ao acaso com oito tratamentos, quatro repetições e 15 plantas por parcela. As plantas foram avaliadas quanto a altura da maior haste, altura da primeira bifurcação, precocidade de florescimento, comprimento e número médio de internódios, produção e características dos frutos produzidos em 12 colheitas, massa de matéria verde e seca de folhas, caules e frutos. As análises químicas foram realizadas em uma planta por parcela aos 35, 83, 135, 178 e 213 dias após o transplante, para determinar a marcha de absorção e exportação de nutrientes. Verificou-se que os híbridos enxertados e não enxertados apresentaram produtividades médias de 132 e 153 t ha-1 para as combinações enxertadas de 'Rúbia R' e 'Rúbia R' pé-franco respectivamente e de 144 e 132 t ha-1 para as combinações enxertadas de 'Margarita' e 'Margarita' pé-franco respectivamente. O acúmulo de nutrientes não foi significativamente diferente entre plantas enxertadas e pés-francos, e a ordem decrescente dos nutrientes acumulados foi: K>N>Ca>Mg>P>S. A partir do que foi observado, concluiu-se que, nessas condições, a enxertia em plantas de pimentão não alterou seu desempenho agronômico, nem teve influência sobre a marcha de absorção de nutrientes. / It was evaluated the yield, accumulation and exportation of nutrients by sweet pepper plants grafted and non grafted, under protected cultivation. The research was carried out from August 2003 to May 2004, at the Technical School Augusto Tortolero Araújo, part of Paula Souza State Center of Technological Education, in Paraguaçu Paulista, SP, in Brazil. The rootstocks used - AF 2638 and AF 2640, are resistant to Phytophthora capsici Leonian and Meloidogyne incognita race 2. The treatments were constituted of non grafted hybrids 'Rúbia R' and 'Margarita'; grafted on two evaluated rootstocks and grafted on themselves. The experimental design was of completely randomized blocks with eight treatments, four replications and fifteen plants per plot. Five plants were sent for chemical analysis. Evaluations of the total plants height, first fork height, early blossom, length and average number of internodes, total yield and fruits characteristics of 12 harvests, fresh and dry matter of leaves, stems and fruits, were carried out. The samples for the chemical analysis were taken at the 35th, 83th, 135th, 173th and 213th days after transplantation, with the objective of determining the accumulation and exportation of the nutrients. The results proved that the grafted and non grafted plants had average yield, with the average of 132 and 153 t ha-1 for the grafted combinations of 'Rúbia R' and non grafted plants of 'Rúbia R' respectively and 144 and 132 t ha-1 for the grafted combinations of 'Margarita' and non grafted plants of 'Margarita' respectively. The accumulation of the nutrients was equivalent for grafted combinations and non grafted plants, and nutrients in decreasing order of accumulation were: K>N>Ca>Mg>P>S. It was evidenced that grafting sweet pepper plants neither its agronomic performance, nor interfered on the uptake of nutrients' absorption.
176

Efficacy of water soluble silicon for control of phytophthora cinnamomi root rot of avocado

Bekker, Theo Frederik 17 September 2007 (has links)
In the current study potassium silicate (20.7% SiO2) induced a 100% inhibition of P. cinnamomi mycelial growth at all concentrations tested. Total inhibition for all fungi tested (Alternaria solani, Colletotrichum gloeosporioides, Curvularia lunata, Drechslera sp., Fusarium oxysporum, Fusarium solani, Glomerella cingulata, Lasiodiplodia theobromae, Mucor pusillus, Natrassia sp., Pestalotiopsis maculans, Phomopsis perniciosa, Phytophthora capsicii, Phytophthora cinnamomi, Pythium F-group, Sclerotinia sclerotiorum, Sclerotium rolfsii, Stemphylium herbarum and Verticillium tricorpus) was attained at a concentration of 40ml.l-1 and higher. Although the high pH of potassium silicate solutions does contribute to the inhibition of fungal growth, the inhibitory effect of potassium silicate on fungal growth in vitro is mostly fungicidal rather than attributed to a pH effect. Phytophthora root rot of avocado nursery trees can be inhibited successfully by potassium silicate application. The effectiveness of potassium silicate application depends however on the repetition of applications. These findings are of paramount importance as this implies that potassium silicate may be a alternative control measure to inhibit the effects of P. cinnamomi on avocado nursery trees. Silicon either stimulates plant growth or imparts some form of protection to avocado roots if applied prior to P. cinnamomi inoculation. Potassium silicate applied as a soil drench resulted in higher root densities compared to that of potassium phosphonate (Avoguard®) injections and untreated control trees. Reapplication again resulted in the best disease suppression and stimulation of new root growth. These results correlated well with tree canopy ratings, as trees that received silicon frequently, showed better canopy conditions compared to the untreated control treatments. Potassium silicate application leads to effective inhibition of Phytophthora cinnamomi infection in avocado orchards. Potassium silicate application resulted in an increase of crude phenols and phenolic polymers in avocado roots cells to similar levels to that obtained in roots from potassium phosphonate (Avoguard®) treated trees. Potassium silicate application leads to lower cell wall bound phenolics. The results of the current study support the hypothesis that silicon application, through an elevation of the total phenolic levels, causes an increase of resistance against P. cinnamomi root rot in avocados. AFRIKAANS : Kaliumsilikaat (20.7% SiO2) induseer ‘n 100% inhibisie van P. cinnamomi groei by alle getoetste konsentrasies. Totale inhibisie van alle swamme getoets (Alternaria solani, Colletotrichum gloeosporioides, Curvularia lunata, Drechslera sp., Fusarium oxysporum, Fusarium solani, Glomerella cingulata, Lasiodiplodia theobromae, Mucor pusillus, Natrassia sp., Pestalotiopsis maculans, Phomopsis perniciosa, Phytophthora capsicii, Phytophthora cinnamomi, Pythium F-groep, Sclerotinia sclerotiorum, Sclerotium rolfsii, Stemphylium herbarum en Verticillium tricorpus) was verkry by ‘n konsentrasie van 40ml.l-1 en hoër. Alhoewel die hoë pH van kaliumsilikaat wel ‘n inhiberende uitwerking het op swamgroei, is die suksesvolle inhibisie van swamgroei grootliks toe te skryf aan die swamwerende effek van kaliumsilikaat op swamgroei in vitro eerder as ‘n pH effek. Phytophthora wortelvrot van avokado kwekelinge kan suksesvol onderdruk word met kaliumsilikaat toediening. Die effektiwiteit van die toediening hang wel af van die hertoediening daarvan. Hierdie bevindinge is van kardinale belang aangesien dit impliseer dat kalium silikaat ‘n alternatiewe beheer middel is om Phytophthora wortelvrot te inhibeer in avokado kwekelinge. Of silikon stimuleer plant groei, of dit induseer ‘n vorm van beskerming in avokado wortels voor infeksie plaasvind. Kaliumsilikaat toediening as ‘n grond-benatter lei tot hoër worteldigthede in vergelyking met kaliumfosfaat (Avoguard®) staminspuitings en onbehandelde kontrole bome. Hertoediening lewer die beste resultate, maar drie toedienings per seisoen is voldoende. Worteldigdheid verhoging na silikaat toedienings korreleer goed met blaredak gesondheid, aangesien bome wat gereeld behandel is met silikon beter blaredekking getoon het in vergelyking met die kontrole bome. Kaliumsilikaat toediening lei to effektiewe inhibisie van Phytophthora cinnamomi infeksie in avokado boorde. Kaliumsilikaat toediening lei tot ‘n toename in totale fenole en fenoliese polimere in avokado wortel selle tot soortgelyke vlakke soos gevind in avokado weefsel vanaf kaliumfosfaat behandelde bome. terselfdertyd lei silikaat toediening tot laer selwand gebinde fenole. Hierdie resultate ondersteun die hipotese dat kaliumsilikaat toediening, deur die verhoging van oplosbare fenole in avokado wortelselle, die plant se weerstand verhoog, en die effek wat Phytophthora wortelvrot het op avokado plante inhibeer. Copyright / Dissertation (MSc (Agric) Horticulture)--University of Pretoria, 2011. / Plant Production and Soil Science / unrestricted
177

Développement d'un bioessai moléculaire pour le diagnostic des sept principaux gènes d'avirulence chez Phytophthora sojae

Dussault-Benoit, Chloé 30 September 2019 (has links)
L’une des principales maladies attaquant le soya est la pourriture phytophthoréenne, causée par l’agent pathogène Phytophthora sojae. La méthode de lutte la plus efficace à ce jour pour contrer cet agent pathogène est la lutte génétique. Des gènes de résistance (Rps) se trouvant naturellement dans certaines lignées de soya sont introgressés dans des cultivars ayant un attrait pour l’agriculture. Cependant, pour définir quel gène Rps utiliser, il est essentiel de connaître les pathotypes de P. sojae se trouvant dans le sol, puisque les gènes Rps reconnaissent les gènes Avr caractérisant les différents pathotypes. Actuellement, les méthodes d’identification des nombreux pathotypes de l’agent pathogène sont des techniques de phénotypage longues et parfois imprécises. Cette étude présente donc le premier outil moléculaire ayant pour but de diagnostiquer rapidementet précisément les pathotypes de P. sojaese trouvant dans un échantillon de sol ou de tissus végétaux infecté. Une étude exhaustive de 31 isolats de P. sojae préalablement réalisée a permis d’identifier des marqueurs discriminants entre les haplotypes de virulence et d’avirulence pour les sept principaux gènes Avr retrouvés en Amérique. Des amorces spécifiques aux différents marqueurs ont été créées. Elles ont par la suite été adaptées afin de pouvoir être utilis.es simultanément dans une PCR multiplexe. Un taux d’efficacité à identifier les gènes d’avirulence présents chez différents isolats de P. sojae de 96% a été atteint lors de l’étude, Avr3a étant le seul gène à présenter des résultats aléatoires. Cela a donc ouvert la porte à d’éventuelles études plus approfondies sur l’interaction entre les gènes Rps3a et Avr3a. Le test sera de plus un outil précieux dans la prise de décision du cultivar à semer pour les producteurs, qui auront désormais accès à plus d’informations quant aux souches de P. sojaese trouvant dans leurs champs.
178

Ecological and Chemical Aspects of White Oak Decline and Sudden Oak Death, Two Syndromes Associated With <i>Phytophthora</i> spp

Nagle, Annemarie Margaret January 2009 (has links)
No description available.
179

Étude des conditions de l'émergence du phytophthora alni sur l'aulne glutineux / Study of the emerging conditions of the alder decline pathogen Phytophthora alni

Aguayo Silva, Jaime Cristián 09 November 2012 (has links)
Depuis les années 1990, l'aulne glutineux, espèce clé des ripisylves, est affecté par un oomycète qui cause son dépérissement : Phytophthora alni subsp. alni (Paa). La genèse de Paa est liée à un événement d'hybridation interspécifique entre deux espèces proches, improprement nommées P. alni subsp. uniformis (Pau) et P. alni subsp. multiformis (Pam), car initialement considérées comme des variants de Paa. L'objectif de cette thèse était d'identifier les facteurs ayant pu jouer un rôle dans l'émergence de la maladie en Europe. Par une approche de génétique des populations, nous avons montré que Pau est une espèce invasive en Europe, probablement originaire d'Amérique du Nord. Après son introduction, l'hybridation de Pau avec Pam serait l'un des facteurs essentiels de l'apparition de Paa. Nos résultats confirment que Paa aurait été généré suite à des hybridations récurrentes, qui ont structuré géographiquement les populations en Europe. L'analyse de la variabilité génétique de Paa, révélée par des marqueurs microsatellites, a toutefois montré un faible polymorphisme, avec un génotype dominant largement répandu en Europe. Par ailleurs grâce à la modélisation, nos résultats ont établi que le dépérissement du houppier des aulnes est lié à la température. En particulier l'incidence de la maladie augmente lors des hivers doux, qui pourraient favoriser la survie du mycélium de Paa, celui-ci ne présentant pas de structure de survie hivernale (chlamydospores ou oospores). La température estivale joue également un rôle, plus complexe à interpréter. On constate en effet que l'incidence de la maladie diminue avec l'augmentation des températures estivales, mais ce phénomène pourrait dépendre d'autres facteurs tels que l'état physiologique des arbres ou le type de communautés microbiologiques présentes dans les sols. Inversement, le phénomène de guérison des arbres est favorisé par des températures hivernales basses et par des températures estivales élevées. L'émergence de la maladie ne peut pas être expliquée par le changement climatique. Cependant, une augmentation des températures hivernales dans le futur dans le cadre du changement climatique aggraverait très probablement l'épidémie / Since the early 1990's alder decline caused by the oomycete Phytophthora alni subsp. alni (Paa) is one of the most important threats to riparian ecosystems in Europe. The emergence of Paa is related to an interspecific hybridization event between two related species -initially considered as Paa variants- misnamed as Phytophthora alni subsp. uniformis (Pau) and Phytophthora alni subsp. multiformis (Pam). The objective of this thesis was to identify the factors that may have contributed to the emergence of the disease in Europe. Following a population genetics approach we showed that Pau is likely to be an invasive species in Europe, probably native to North America. Its introduction would have enabled hybridization with Pam and, consequently be a major cause on the emergence of Paa. Our results confirm that Paa has arisen from several hybridization events, which have geographically structured its European populations. Paa's genetic variability, revealed by microsatellite markers, showed low levels of polymorphism, with a dominant genotype scattered throughout Europe. In addition, a modelling approach revealed that alders' crown decline is linked to temperature. In particular, the disease incidence increases during mild winters which favours mycelium survival as Paa does not produce resistant spores (chlamydospores or oospores). The effect of summer temperatures is more complex to explain. Disease incidence decreases when summer temperatures are higher, but this phenomenon can also be linked to the physiological conditions of trees or changes in soil microbiological communities. Conversely, tree recovery is favoured by lower winter and higher summer temperatures. Climate change does not explain the emergence of the disease. However, increases in winter temperatures du to climate change may strengthen the epidemic
180

dnj-16 é provavelmente o resultado de transferência horizontal do gene relacionado ao gravitropismo ARG1, de plantas para nematoides, mas não é induzido por hipergravidade de até 400.000 x g em Caenorhabditis elegans / dnj-16 is probably the result of horizontal gene transfer of ARG1 gravitropism related gene, from plants to nematodes, but is not induce by hypergravity up to 400,000 x g in Caenorhabditis elegans

Souza, Tiago Alves Jorge de 19 April 2018 (has links)
Durante a anidrobiose (um estado ametabólico muito estável), o nematóide Panagrolaimus superbus tolera vários tipos de estresses físicos. A fim de melhor compreender essa extremotolerância, P. superbus foi submetido a regimes de hiperaceleração (RHA) de até 400.000 x g. Surpreendentemente, foi observado que esse verme tolera a exposição à RHA tanto dessecado (i.e., em anidrobiose) como hidratado. Para verificar se esse fenômeno era específico para essa espécie ou algo observável em outros organismos, os mesmos procedimentos experimentais foram realizados no organismo modelo Caenorhabditis elegans. Intrigantemente, C. elegans também mostrou o mesmo perfil de sobrevivência. Ademais, o desenvolvimento, comportamento, morfologia e crescimento populacional desse nematóide também foram analisados após a exposição ao RHA, não sendo observada quaisquer mudanças nesses parâmetros em função da exposição à hipergravidade. Em seguida, foram realizadas buscas (tBLASTn) no genoma de C. elegans por homólogos de genes relacionados ao gravitropismo que são naturalmente encontrados em plantas. Essa busca resultou nos genes dnj- 16 (homólogo ao ARG1), ipla-1 (homólogo ao SGR2) e uma sequência não caracterizada (homóloga a TWD1). Especial atenção foi despendida ao gene dnj-16, uma vez que é o mais conservado entre eles. As análises de RT-qPCR revelaram que o dnj-16 é ligeiramente regulado para baixo durante o RHA, o que não era esperado caso ele possuísse função semelhante ao seu homólogo em plantas. A análise do estado metabólico desse nematoide durante o RHA lançou luz sobre os dados de RT-qPCR, mostrando que a queda na expressão de dnj-16 é provavelmente devida à centrifugação. Posteriormente, diversas análises in silico foram realizadas a fim de caracterizar o gene dnj-16 e a sua respectiva proteína. Inicialmente, a análise comparativa dos domínios DnaJ, transmembrana e coiled coil das proteínas dnj-16, ARG1, ARL1 e ARL2 apontou para uma grande semelhança não apenas na sequência como na estrutura dessas proteínas. Essa grande similaridade motivou análises para desvendar o papel e a origem do gene dnj-16. Três hipóteses ((i) homologia, (ii) convergência e (iii) transferência gênica horizontal (TGH)) foram consideradas na investigação desse intrigante gene. Os resultados obtidos nas análises in silico apontaram para uma TGH mediada por RNA, potencialmente ocorrida a 1325 m.a., como a hipótese mais plausível para explicar a origem de dnj-16 e algumas espécies parasitas do gênero Phytophthora como prováveis mediadores dessa transferência. Dessa forma, os dados apresentados nessa tese mostram pela primeira vez que C. elegans é tolerante a RHA ordens de magnitude mais altas do que se pensava serem compatíveis com a vida multicelular. Além disso, os dados sugerem que dnj-16 foi transferido horizontalmente de plantas para nematoides e que a ultracentrifugação leva a uma redução no metabolismo de C. elegans, o que ajudaria a explicar a sua sobrevivência sob tal condição extrema. Por fim, o conjunto de dados desse trabalho representa contribuições originais para a compreenção da biologia, da genética e da evolução de C. elegans. / During anhydrobiosis (a very stable ametabolic state), the nematode Panagrolaimus superbus tolerates many types of physical stresses. In order to better understand this extremotolerance, P. superbus underwent hyperacceleration regimes (RHA) of up to 400,000 x g. Surprisingly, it was observed that this worm tolerated RHA exposure both dried (i.e., during anhydrobiosis) and hydrated. In order to verify if this phenomenon was specific for this species or something observable in other organisms, the same experimental procedures were performed in the model organism Caenorhabditis elegans. Intriguingly, C. elegans also showed the same survival profile. In addition, the development, behavior, morphology and population growth of this nematode were also analyzed after the exposure to RHA and no changes were observed in these parameters due to the hypergravity exposure. Thereafter, searches (tBLASTn) were performed on C. elegans genome by homologs of gravitropism related genes that are naturally found in plants. These searches resulted in the genes dnj-16 (homologous to ARG1), ipla-1 (homologous to SGR2) and an uncharacterized sequence (homologous to TWD1). Special attention was given to dnj-16 gene, since it is the most conserved among them. RT-qPCR analyzes revealed that dnj-16 is slightly down regulated during RHA, which was not expected if it had similar function to its homologue in plants. Analysis of the metabolic status of this nematode during RHA shed light on the RT-qPCR data, showing that the decrease in dnj-16 expression was probably due to centrifugation. Subsequently, several in silico analyzes were performed in order to characterize the dnj-16 gene and its respective protein. Initially, the comparative analyzis of the DnaJ, transmembrane and coiled coil domains of dnj-16, ARG1, ARL1 and ARL2 proteins pointed to a great similarity not only in the sequence as well as in the structure of these proteins. This great similarity motivated analyzes in order to uncover the real nature of the dnj-16 gene. Three hypotheses ((i) homology, (ii) convergence and (iii) horizontal gene transfer (HGT)) were considered in the investigation of this intriguing gene. The results obtained in the in silico analyzes indicated an RNA mediated TGH, potentially occurred 1325 my (millions of years), as the most plausible hypothesis to explain the origin of dnj-16 and some parasitic species of the Phytophthora genus as probable mediators of this transference. Therefore, data presented in this thesis show for the first time that C. elegans tolerates RHA of magnitude orders higher than it was thought to be compatible with multicellular life. In addition, the data suggest that dnj-16 was transferred horizontally from plants to nematodes and that ultracentrifugation leads to a reduction in C. elegans metabolism, which would help explain its survival under such extreme condition. Finally, the data set of this work represent original contributions to the understanding of the C. elegans\' biology, genetics and evolution.

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