京都大学 / 0048 / 新制・課程博士 / 博士(医学) / 甲第20223号 / 医博第4182号 / 新制||医||1019(附属図書館) / 京都大学大学院医学研究科医学専攻 / (主査)教授 中川 一路, 教授 岩田 想, 教授 松本 智裕 / 学位規則第4条第1項該当 / Doctor of Medical Science / Kyoto University / DFAM

京都大学 / 0048 / 新制・課程博士 / 博士(医学) / 甲第21302号 / 医博第4391号 / 新制||医||1030(附属図書館) / 京都大学大学院医学研究科医学専攻 / (主査)教授 生田 宏一, 教授 椛島 健治, 教授 杉田 昌彦 / 学位規則第4条第1項該当 / Doctor of Medical Science / Kyoto University / DFAM

Wolbachia are widespread obligate intracellular bacteria that are maternally transmitted and modulate reproduction of their invertebrate host. Mosquitoes transinfected with Wolbachia have reduced capacity for transmitting vector borne diseases and can replace native populations in the field because of a reproductive advantage. The cellular mechanisms of how reproduction is altered by Wolbachia are poorly understood. In this work Wolbachia-induced reproductive changes in the model organism Drosophila were used to pinpoint underlying cellular processes affected by the bacteria. Specifically, egg production (or fecundity) of Wolbachia-infected Drosophila mauritiana was compared to non-infected flies that had been generated by antibiotic treatment of infected flies. Immediately before the fecundity experiment backcrossing of both fly lines ensured an equivalent nuclear genetic background. Initially egg production in Wolbachia-infected flies was increased by 4-fold but in less than 30 generations this changed to a 0.84 fold decrease with a slight advantage for the non-infected line. Additional backcrossing experiments determined that selection on the host nuclear genome is one of the factors underlying this reversion of fecundity gains. Other non-Mendelian factors, such as the microbiota, may also play a role in this rapid change. Wolbachia alterations in egg production were always linked to Wolbachia induced changes in programmed cell death (PCD) in the germarium during oogenesis and germline stem cell (GSC) division. Germline stem cells are maintained and regulated through their interaction with the germline stem cell niche (GSCN). Interestingly, these cells are both frequently infected with Wolbachia and possess a high bacterial titer. A developmental time course revealed the mechanism of how Wolbachia accumulate in the niche cells. The data suggest that the bacteria actually coordinate their replication with the differentiation of the niche cells. Future work on understanding the cellular and molecular basis of Wolbachia - host interaction will not only give insight into novel mechanisms of host manipulation by a pathogen, but will also expand our current understanding of stem cell niche morphogenesis and modulation of stem cell proliferation. / 2018-06-05T00:00:00Z

京都大学 / 新制・課程博士 / 博士(医学) / 甲第23762号 / 医博第4808号 / 新制||医||1056(附属図書館) / 京都大学大学院医学研究科医学専攻 / (主査)教授 生田 宏一, 教授 川口 義弥, 教授 上野 英樹 / 学位規則第4条第1項該当 / Doctor of Medical Science / Kyoto University / DFAM

<p>Cancer occurs when cells acquire a number of mutations that trigger uncontrolled cell growth. The normal cellular response to this dysregulation of growth is the activation of programmed cell death. While focus in cancer research has been mainly concentrated in the mechanism of programmed cell death at the mitochondria, endoplasmic reticulum is slowly emerging as an essential platform for this regulatory mechanism.</p> <p>Bcl-2 is the founding member of the Bcl-2 family of protein, which contributes to the regulation of cell death at the mitochondria and at the endoplasmic reticulum. Previously in our lab, we have shown using MCF-7 cells stably expressing Bcl-2 targeted to the endoplasmic reticulum; they were protected from estrogen deprivation induced cell death. Thus the regulatory mechanism of Bcl-2 at the endoplasmic reticulum represents an interesting avenue to improve current cancer therapeutics.</p> <p>Two approaches were utilized to identify and characterize Bcl-2 and its interacting partners at the endoplasmic reticulum. Using an affinity tag fused to Bcl-2 that has been engineered to target the endoplasmic reticulum, tandem affinity purification was utilized to identify novel Bcl-2 interacting partners when estrogen receptor positive cells are treated with estrogen deprivation. Using fluorescent protein fused to the proteins of interest, Fluorescent Lifetime Imaging Measurement (FLIM) was used to characterize the interactions of Bcl-2 and its known interacting partner at the endoplasmic reticulum. The findings of this thesis verify the applications of the two aforementioned methods in the study of Bcl-2 interacting proteins at the endoplasmic reticulum.</p> / Master of Science (MSc)

Cysteine proteases are associated with xylem tracheary element differentiation. XCP1 was recently identified as a xylem-specific cysteine protease in Arabidopsis (Zhao, et al., 2000). For this study a recombinant polyhistidine-tagged XCP1 (XCP1H6) was expressed and purified from an E. coli expression system. A polyclonal anti-XCP1 antibody was produced using purified XCP1H6. Immunoblot analysis of a developmental time course of xylem and bark protein extracted from root-hypocotyl segments demonstrated that XCP1 was expressed in xylem only. Further analysis under optimized immunoblot conditions, however, revealed that anti-XCP1 antibody reacted with protein present in both xylem and bark. The vast majority of immunoreactivity, however, was restricted to xylem. Cell-type localization of GUS expression under the control of a putative XCP1 promoter indicated that the XCP1 promoter specifies expression of XCP1 in tracheary elements in leaves, stems, roots and flowers. XCP1 promoter-driven GUS activity was not associated with senescing tissues. / Master of Science

The evolutionary success of land plants was fostered by the acquisition of the xylem vascular tissue which conducts water and minerals upwards from the roots. The xylem tissue of flowering plants is composed of three main types of cells: the sap-conducting tracheary elements (TE), the fibres which provide mechanical support and the parenchyma cells which provide metabolic support to the tissue. Both the TEs and the fibres deposit thick polysaccharidic secondary cell walls (SCWs), reinforced by a rigid phenolic polymer called lignin. The cell walls of TEs form efficient water conducting hollow tubes after the TEs have undergone programmed cell death (PCD) and complete protoplast degradation as a part of their differentiation. The work presented in this thesis studied the regulation of TE PCD by characterizing the function of the candidate PCD regulator METACASPASE 9 (MC9) in Arabidopsis thaliana xylogenic cell suspensions. These cell suspensions can be externally induced to differentiate into a mix of TEs and parenchymatic non-TE cells, thus representing an ideal system to study the cellular processes of TE PCD. In this system, TEs with reduced expression of MC9 were shown to have increased levels of autophagy and to trigger the ectopic death of the non-TE cells. The viability of the non-TE cells could be restored by down-regulating autophagy specifically in the TEs with reduced MC9 expression. Therefore, this work showed that MC9 must tightly regulate the level of autophagy during TE PCD in order to prevent the TEs from becoming harmful to the non-TEs. Hence, this work demonstrated the existence of a cellular cooperation between the TEs and the surrounding parenchymatic cells during TE PCD. The potential cooperation between the TEs and the neighbouring parenchyma during the biosynthesis of lignin was also investigated. The cupin domain containing protein PIRIN2 was found to regulate TE lignification in a non-cell autonomous manner in Arabidopsis thaliana. More precisely, PIRIN2 was shown to function as an antagonist of positive transcriptional regulators of lignin biosynthetic genes in xylem parenchyma cells. Part of the transcriptional regulation by PIRIN2 involves chromatin modifications, which represent a new type of regulation of lignin biosynthesis. Because xylem constitutes the wood in tree species, this newly discovered regulation of non-cell autonomous lignification represents a potential target to modify lignin biosynthesis in order to overcome the recalcitrance of the woody biomass for the production of biofuels.

Mitochondria are usually considered simply as the “powerhouses of the cell”, however in recent years it has become apparent that mitochondria are also of fundamental importance in programmed cell death (PCD), which refers to cell death resulting from a controlled, genetically defined pathway. In Arabidopsis, PCD induced by either heat shock or treatment with strong oxidants is found to be correlated with an early and irreversible change in mitochondrial morphology which manifests as an increase in the size of individual mitochondria. In addition, PCD causes a clustering of mitochondria and loss of motility. In this study, I have used two arginase negative mutant Arabidopsis lines (argah1-1 and argah2-1) which have elevated cellular NO concentrations to examine the effect of nitrosative stress on mitochondria undergoing PCD. Another three different Arabidopsis lines (mito-GFP/mTalin-mCherry, mito-GFP/MAP4-mCherry, mito- mCherry/EB1b-GFP) were used to visualize cytoskeletal elements alongside mitochondria to examine the mechanisms responsible for the mitochondrial morphology transition, clustering and motility inhibition. Results indicate that the elevated concentration of NO found in arginase negative mutants is not sufficient to induce PCD. There was no significant mitochondrial morphology or dynamic change detected between arginase negative mutants and wild type plants, with or without a heat shock. Disruption of either actin or microtubule (MT) cytoskeletal elements leads to the formation of mitochondrial clusters, although they showed different cluster morphology and sizes. Mitochondrial clusters were observed to be moving along the remaining actin cables after a mild heat treatment or cytoskeletal depolymerizing drug treatment. Intact microtubules or MT plus ends visualized with EB1b did not show any interaction with mitochondria under normal conditions. However, after a mild heat stress, EB1b appeared to be associated with clusters of enlarged, possibly swollen mitochondria.

O exercício físico intenso está associado à mudanças na quantidade, na função e na morte de neutrófilos. Tem sido proposto que a suplementação com óleo de peixe minimiza os efeitos imunossupressivos do exercício físico e que a fosfatidilcolina também poderia exercer importantes efeitos sobre a função de leucócitos. O objetivo do estudo foi o de investigar os efeitos da meia maratona e da suplementação com lecitina de soja ou óleos de peixe ricos em EPA ou DHA na apoptose de neutrófilos de atletas amadores. Quarenta e seis atletas amadores, foram avaliados antes e após duas competições de meia maratona. Na primeira meia maratona, os atletas não foram suplementados. As coletas de sangue dos atletas foram realizadas nas seguintes condições: Em repouso e imediatamente após a competição. No primeiro dia, após a primeira meia maratona, iniciou-se a suplementação. Os indivíduos foram suplementados diariamente com 3g de óleo de peixe ou lecitina de soja, por 60 dias, e divididos em 3 grupos: 1) Lecitina, 2) DHA e 3) EPA. Os atletas foram reavaliados 8 semanas após o início da suplementação. Já na segunda meia maratona, com todos os atletas suplementados, as coletas de sangue foram realizadas nas mesmas condições da primeira corrida. Neste estudo avaliamos os receptores da apoptose de neutrófilos (Fas e TRAIL), as moléculas de adesão (L-selectina e ICAM-1), a fragmentação de DNA e a externalização de fosfatidilserina. Além disso, foi avaliada a concentração plasmática das citocinas TNF-alfa, IL-8, IL-6, IL-4, IL-10 e IL-1beta. As enzimas creatina quinase e lactato desidrogenase, a concentração de mioglobina, proteína C reativa e o número de leucócitos e neutrófilos também foi determinada. A meia maratona aumentou a atividade das enzimas CK e LDH e a concentração de mioglobina em todos os grupos estudados, sendo que a suplementação não apresentou nenhum efeito sobre estes parâmetros. Já o número de neutrófilos e leucócitos, aumentaram após a meia maratona em todos os grupos, e a suplementação provocou este aumento somente nos grupos EPA e Lecitina. Em neutrófilos de atletas, a meia maratona diminuiu a expressão dos receptores Fas e TRAIL e das móleculas de adesão ICAM-1 e L-selectina em todos os grupos, por outro lado, aumentou a fragmentação de DNA (somente no grupo DHA) e a externalização de FS (DHA, EPA e Lectina). A meia maratona também elevou a concentração das citocinas IL-8, IL-6 e IL-10 em todos os grupos. Já a suplementação (DHA, EPA ou lecitina de soja) diminuiu a fragmentação de DNA e a expressão do receptor Fas em neutrófilos. Além disso, aumentou a expressão de TRAIL, ICAM-1, L-selectina e a externalização de fosfatidilserina. Em relação a concentração plasmática de citocinas a suplementação reduziu a concentração de TNF-alfa e aumentou a de IL-10 em todos os grupos. Enquanto que, a concentração de IL-4 aumentou somente nos grupos DHA e EPA. Concluímos que a suplementação com lecitina de soja apresenta efeitos semelhantes aos dos óleos de peixe ricos em EPA ou DHA sobre a função de leucócitos em atletas amadores. / Intense physical exercise is associated with changes in the number, function and death of neutrophils. It has been proposed that supplementation with fish oil rich minimizes the immunosuppressive effects induced by intense physical exercise and phosphatidylcholine could also have significant effects on leukocytes function. The aim of this study was to investigate the effects of a half-marathon and fish oil suplemmentation rich in EPA or DHA or soy lecithin suplemmentation on neutrophils apoptosis of amateur athletes. Forty-six recreational athletes were evaluated before and after two half marathons. In the first competition the athletes did not receive supplementation. Blood samples were collected in the following conditions: In rest and immediately after competition. On the first day, after the first half-marathon, supplementation began. The subjects were supplemented with 3 g of fish oil or soy lecithin daily for 60 days and divided into 3 groups: 1) Lecithin 2) DHA 3) EPA. The athletes were assessed 8 weeks after the start of supplementation. In the second half-marathon, with all the supplemented athletes, blood samples were collected under the same conditions of the first competition. In this study were evaluated the receptors of neutrophils apoptosis (Fas and TRAIL), adhesion molecules (L-selectin and ICAM-1), DNA fragmentation and phosphatidylserine externalization. Moreover, the plasma concentration of TNF-alpha, IL-8, IL-6, IL-4, IL-10 and IL-1beta cytokines was evaluated. The enzymatic activity of creatine kinase and lactate dehydrogenase, plasma concentration of myoglobin, and C-reactive protein and blood counts was also determined. The half-marathon increased the enzymatic activity of CK and LDH and the myoglobin concentration in all groups studied, and the supplementation had no effect on these parameters. The number of neutrophils and leucocytes increased in all groups after half marathon, and the supplementation caused this increase only in the EPA and Lecithin groups. In athletes neutrophils, the half-marathon decreased the expression of Fas and TRAIL receptors and of ICAM-1 and L-selectin adhesion molecules. On the other hand, it increased DNA fragmentation (only in the DHA group) and phosphatidylserine externalization (DHA, EPA and Lecithin groups). The half-marathon also increased concentrations of IL-8, IL-6 and IL-10 cytokines in all groups. The Supplementation (DHA or EPA or soy lecithin) decreased DNA fragmentation and Fas receptor expression in neutrophils. Moreover, increased expression of TRAIL, ICAM-1, L-selectin and phosphatidylserine externalization. In relation to cytokines plasma concentration the supplementation decreased TNF-alfa and increased the concentration of IL-10 in all groups. Whereas, IL-4 concentration increased only DHA and EPA groups. In conclusion, supplementation with soy lecithin has similar effects to the fish oils rich in EPA or DHA on leukocyte function amateur athletes.

A resistência das paredes celulares vegetais à hidrólise enzimática é um dos grandes gargalos tecnológicos para a obtenção do etanol celulósico. Acredita-se que as modificações nas paredes celulares em processos como a mobilização de reservas, formação de aerênquima, amadurecimento de frutos e senescência, por exemplo, envolvam a ativação de módulos funcionais que culminam em alterações nas paredes celulares. Estes módulos são: 1) recepção de um sinal para início do processo; 2) Morte Celular Programada (PCD); 3) separação celular; 4) expansão celular; 5) hidrólise de hemiceluloses e 6) hidrólise de celulose. No caso da formação de aerênquimas lisígenos o processo que se inicia com a PCD e é seguido pela liberação de glicosil hidrolases que atuam a na degradação e/ou modificação da parede celular, formando espaços de ar no córtex radicular. A formação de aerênquima nas raízes de cana de açúcar é constitutiva e pouco se sabe sobre os mecanismos de modificação que ocorrem na parede celular durante este processo. Este estudo buscou compreender os padrões de variação expressão gênica, proteínas e de atividades enzimáticas associados à formação do aerênquima em raízes de cana de açúcar, com ênfase no papel das hidrolases de parede celular e em algumas proteínas relacionadas à PCD. Foram utilizados 5 segmentos de raízes de 1 cm cada, a partir do ápice radicular. No material coletado observou-se a formação gradual de aerênquima. Foram realizadas análises transcricional, proteômica e atividade enzimática das glicosil hidrolases e outras proteínas que atuam na modificação da parede celular, os quais foram identificados e quantificados ao longo da formação do aerênquima. As glicosil hidrolases pertencentes às famílias Cazy GH1, GH3, GH17, GH18 bem como expansinas, celulose sintase, lacase, calreticulina, calmodulina e proteínas relacionadas a degradação de pectinas, foram encontradas ao longo dos segmentos, principalmente após o segmento 2. De acordo com a atividade transcricional e dados da proteômica, sugere-se que os polissacarídeos seriam atacados por enzimas nos estágios iniciais da formação do aerênquima (seg 2 e 3). O ataque ocorre principalmente sobre as pectinas e o &beta;-glucano. Contudo, os dados apontam para a deposição de xiloglucano, xilanos e celulose (após seg 3), que formam um compósito ao redor dos espaços de ar. Isto sugere que parte dos polissacarídeos das paredes não sejam degradados ao longo do processo, embora enzimas específicas detectadas possam atuar na modificação dos mesmos, como verificado para algumas pectinases e membros de GH17. Além disso, nos pré-tratamentos com água foi possível observar que há maior sacarificação da parede nos seg. 1 e 2. Contudo quando retira-se a maior parte das pectinas e hemiceluloses após pré-tratamento com NaOH, a sacarificação é maior nos segmentos 2, 3 e 4, devido ao maior acesso e a maior quantidade de celulose. As glicosil hidrolases encontradas neste trabalho sugerem que estas atacam a parede de um específico conjunto de células do córtex que dá origem ao aerênquima. Já no fim do processo, quando há lise celular, algumas paredes de células remanescentes são recalcitrante à hidrólise, provavelmente devido a sua arquitetura e composição. Este trabalho traz informações para o desenvolvimento de futuras tecnologias para a produção do etanol do etanol celulósico de cana-de-açúcar / The resistance of plant cell walls to enzymatic hydrolysis is one of the main bottlenecks of the development of technology of production of cellulosic ethanol. It is believed that the modifications in cell walls related to processes of storage mobilization, aerenchyma formation, fruit ripening and senescence, for instance, involve the activation of functional moduli that culminate in alterations of cell walls. These moduli are: 1) signal perception to start the process; 2) Programmed Cell Death (PCD); 3) cell separation; 4) cell expansion; 5) hydrolysis of hemicelluloses and 6) hydrolysis of cellulose. In the case of the formation of lysigenous aerenchyma, the process starts with PCD and is followed by the release of glycosil hydrolases that act on the degradation and/or cell wall modifications, forming air spaces in the cortex of the root. The formation of aerenchyma in the roots of sugarcane is a constitutive phenomenon and little is known about the mechanisms of modification that occur in cell walls during its development. Thus, the present study focused on the visualization of the patterns of variation of gene expression, proteins and enzyme activities associated to the formation of aerenchyma in roots of sugarcane in order to understand the role of the cell wall hydrolases and some proteins related to PCD in cell wall modifications along the process. Five root segments of 1cm each, starting from root apex, were used. A gradual centripetal formation of aerenchyma was recorded in the cortex of developing roots. Analyses of the transcriptional, proteomic and enzyme activity profiles during the process revealed that several enzymes act on cell wall modifications. The glycosil hydrolases belonging to the Cazy families GH1. GH3, GH17, GH18, as well as expansins, cellulose synthase, laccase, calreticulin, calmodulin and other proteins related to pectin degradation have been found along the segments, mainly after segment 2. According to the data on transcriptomics and proteomics, it is suggested that enzymes attack polysaccharides during the initial stages of aerenchyma formation (seg. 2 and 3). The attack of the enzymes occurs mainly on pectins and &beta;-glucan. Conversely, the data point out to the deposition (or maintenance) of xyloglucan, xylan and cellulose (after seg. 3), which form a composite that surrounds the air spaces. This suggests that part of the polysaccharides present in cell walls are not degraded during the process, although specific enzymes have been detected that could act on polysaccharide mobilization, such as the GH17 family. Further, under pretreatment with water, it has been observed that cell wall saccharification was higher at segments 1 and 2. On the other hand, when most of the pectins and hemicelluloses are retrieved by pretreatment with NaOH, saccharification is higher of segments 2, 3 and 4, probably due to the higher access to the wall and also to the higher proportion of cellulose. The profiles related to the glycosil hydrolases found in this work, suggest that these enzymes attack the cell wall. Initially, they are probably kept within a group of cells that will originate the aerenchyma. At the end of the process, when there is cell lysis, the remaining walls of some cells are recalcitrant to hydrolysis probably due to changes in their architecture and composition. Our findings bring promising information that could be used in the future to improve efficiency of hydrolysis for cellulosic ethanol production from sugarcane