CoordenaÃÃo de AperfeiÃoamento de Pessoal de NÃvel Superior / O pinhÃo manso (Jatropha curcas L) à uma planta oleaginosa com grande potencial para a produÃÃo de biocombustÃvel devido à riqueza de lipÃdios existente em suas sementes. Portanto, à uma fonte potencial de Ãleo renovÃvel que tem recebido considerÃvel atenÃÃo da comunidade cientÃfica. O objetivo deste estudo foi fazer uma anÃlise da expressÃo gÃnica de proteinases cisteÃnicas relacionadas à morte celular programada (MCP) em sementes em desenvolvimento e durante a germinaÃÃo de pinhÃo manso, no intuito de conhecer melhor o transcriptoma dos principais genes envolvidos no processo de MCP e durante a deposiÃÃo de proteÃnas de reservas durante a maturaÃÃo das sementes de pinhÃo manso. Para quantificar com acurÃcia os nÃveis de expressÃo gÃnica por RT-qPCR foi necessÃrio realizar uma seleÃÃo de genes de referÃncia (genes constitutivos). Os genes constitutivos escolhidos para esse estudo foram: GliceraldeÃdo-3-fosfato desidrogenase (GAPDH), Poliubiquitina (PUB), alfa-tubulina (TA2), proteÃna fosfatase 2-A (PP2A2), fator de alongaÃÃo-alfa (EF1-α) e actina, todos eles citados e escolhidos na literatura para estudo de normalizaÃÃo de genes em plantas. AtravÃs do programa geNorm de foi possÃvel mostrar os genes de referÃncia mais estÃveis dentre os seis genes de referÃncia. Nossos resultados apontaram que os genes de referÃncia mais estÃveis ​​para as amostras de endosperma e integumento em desenvolvimento foram: GAPDH, PP2A2 e EF1-α e TA2. Os genes de menor estabilidade foram: a actina11; poliubiquitina (PUB). Na germinaÃÃo, os genes mais estÃveis foram GAPDH, PUB e TA2. Entretanto, os genes com menores valores de estabilidade foram a actina, EF1-α e PP2A2. Em nossos estudos, o programa geNorm tambÃm mostrou o nÃmero de genes de referÃncia necessÃrios para a normalizaÃÃo dos dados obtidos por RT-qPCR. Na anÃlise desse estudo, nos mostramos que para as sementes em desenvolvimento, a adoÃÃo de quatro genes mais estÃveis foram GAPDH, PP2A2 e EF1-α e TA2 necessÃrios para normalizaÃÃo dos dados de RT-qPCR. Nos dados de sementes em germinaÃÃo, mostrou-se a adoÃÃo de trÃs genes mais estÃveis ​​(GAPDH, PUB e TA2). Contudo, Para validar nossos resultados com genes de referÃncia, foi usado o perfil padrÃo da expressÃo do gene que expressa a oleosina, na qual mostrou que o padrÃo de expressÃo da oleosina està de acordo com os fornecidos pela literatura, revelando que os genes de referÃncia sÃo eficientes para normalizar os dados obtidos pela RT-qPCR. De posse desses resultados, realizou-se um estudo de expressÃo de genes supostamente envolvidos na morte celular programada e na maturaÃÃo de sementes de pinhÃo manso. Nossos resultados mostraram que os genes com seqÃÃncia C-terminal KDEL: JcCB0580861; JcCA0152821; JcCA0047111 e o gene γ-VPE JCCB0060111 mostraram um altos nÃveis de expressÃo nos estÃgios mais avanÃados em tecidos do integumento e endosperma em sementes de pinhÃo manso em desenvolvimento, e com base em nossas anÃlises, esses genes expressam proteinases cisteÃnicas que estÃo possivelmente envolvidos no processo de MCP. NÃo obstante, os genes que expressam as seguintes VPEs: JcCB0196871; JcCB0244081; e JcCA0012422 de acordo com nossos estudos, provavelmente estÃo envolvidas na maturaÃÃo das proteÃnas de reservas de sementes em desenvolvimento de pinhÃo manso. Esses dados forneceram importantes informaÃÃes a cerca do padrÃo de expressÃo de genes que estÃo envolvidos no transcriptoma de sementes em desenvolvimento, mais precisamente envolvidos no processo de MCP. NÃo obstante, o estudo de normalizaÃÃo e validaÃÃo de genes de referÃncia nos tecidos de integumento e endosperma do pinhÃo manso propiciaram um melhor entendimento no que diz respeito à estabilidade desses genes nas condiÃÃes estudadas. / Jatropha (Jatropha curcas L) is an oilseed plant with great potential for biofuel production because of the wealth of existing lipids in their seeds. Therefore, it is a potential source of renewable oil that has received considerable attention from the scientific community. The objective of this study was to analyze the gene expression of cysteine ​​proteinases related to programmed cell death (PCD) in developing seeds and during germination of Jatropha in order to better understand the transcriptome of the major genes involved in the MCP and during the deposition of protein reserves during maturation of seeds of Jatropha. To accurately quantify the levels of gene expression by RT-qPCR was necessary to make a selection of reference genes (genes constituting). The constituent genes chosen for this study were: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), polyubiquitin (PUB), alpha-tubulin (TA2), protein phosphatase 2 A (PP2A2), elongation factor-alpha (EF1-α) and actin, all cited in the literature and were chosen for study standardization of genes into plants. Through the program of geNorm was possible to show the more stable reference genes among the six genes of reference. Our results indicate that the most stable reference genes for samples of the developing endosperm and integument were: GAPDH, PP2A2 and EF1-α and TA2. The genes were less stable: the actina11; polyubiquitin (PUB). In germination, the most stable genes were GAPDH, PUB and TA2. However, genes with lower stability values ​​were actin, EF1-α and PP2A2. In our studies, the geNorm program also showed the number of reference genes needed for normalization of data obtained by RT-qPCR. In the analysis of this study, we show that for the developing seeds, the use of four most stable genes were GAPDH, PP2A2 and EF1-α and TA2 needed for normalization of RT-qPCR data. In the data of germinating seeds, was the adoption of more stable three genes (GAPDH, PUB and TA2). However, To validate our findings with reference genes, we used the standard profile of gene expression which expresses oleosina, which showed that the expression pattern of oleosina is provided according to the literature, genes reveals that the reference are efficient to normalize the data obtained by RT-qPCR. With these results, we carried out a study of expression of genes supposedly involved in programmed cell death and maturation of seeds of Jatropha. Our results showed that genes with sequence C-terminal KDEL: JcCB0580861; JcCA0152821; JcCA0047111 and γ-VPE gene JCCB0060111 showed high levels of expression in later stages in tissues of the integument and endosperm of seeds of Jatropha in developing and Based on our analysis, these genes express cysteine ​​proteinases that are possibly involved in the MCP. Nevertheless, genes that express the following VPEs: JcCB0196871; JcCB0244081, and JcCA0012422 according to our studies, are probably involved in the maturation of protein reserves in developing seeds of Jatropha. These data provided important information about the expression pattern of genes that are involved in the transcriptome of developing seed, more specifically involved in the process of MCP. However, the study of standardization and validation of reference genes in tissues of the integument and endosperm Jatropha provided a better understanding as regards the stability of these genes in the studied conditions

Apesar da melhoria no sistema de produção e cultivo dos embriões in vitro, cerca de 60% dos oócitos que entram no sistema, não atingem o estágio de blastocisto e a qualidade dos embriões obtidos é bastante variável quando comparadas com embriões produzidos in vivo. Este bloqueio pode ser afetado por íons inorgânicos, tampões, aminoácidos e composição da atmosfera gasosa. Partindo-se da premissa que há influência da mitocôndria sobre a ativação da morte celular programada levou-nos a formular a hipótese que ausência de fragmentação nuclear nos embriões antes das 72 hpi está relacionada com a ausência do potencial de membrana mitocondrial e a inibição da OXPHOS pela utilização de bloqueadores leva a manutenção de baixos níveis de potencial de membrana mitocondrial e baixas taxas de fragmentação nuclear nos embriões. Embriões foram produzidos in vitro mediante maturação durante 22 horas, fecundação e cultivo 18 horas após a inseminação (hpi). Decorridas 24hpi realizou-se o cultivo com 0% de oxigênio, a fim de bloquear o processo de OXPHOS. Após 48 hpi realizou-se o feeding do meio de cultivo (SOF) com inibidores da OXPHOS (antimicina A e/ou oligomicina, cianeto de potássio) em diferentes doses. O número de embriões 8 células foi determinado às 80 hpi, mesmo momento em que foram realizadas as técnicas de JC-1 e TUNEL. Verificou-se as 168 hpi o efeito dos tratamentos no desenvolvimento embrionário. Os resultados obtidos com a inibição da OXPHOS após 48 hpi com oligomicina e/ou antimicina A nas doses utilizadas não alterou a capacidade do embrião atingir o estádio de 8 células. Entretanto, esta inibição inviabilizou o desenvolvimento até o estádio de blastocisto. O tratamento com KCN permitiu o desenvolvimento até o estádio de 8 células e a blastocisto em taxas semelhantes ao controle. A inibição do cultivo na ausência do O2 inviabilizou o processo de cultivo. Já os resultados obtidos quanto ao Ψmm e TUNEL evidenciam que os tratamentos dos embriões antimicina e/ou oligomicina levaram a um aumento do Ψmm e fragmentação nuclear na maioria dos embriões testados. Portanto, não foi possível testar a hipótese de que o Ψmm é necessário para o estabelecimento da MCP, todavia, foi observada uma correlação positiva entre Ψmm e fragmentação nuclear. / Although in vitro embryo production has been improved in the last 2 decades, about 60% of the oocytes do not reach the blastocyst stage and embryo quality is very variable when compared with in vivo produced embryo. This developmental block can be affected by inorganic ions, buffers, aminoacids and gaseous atmosphere composition. The knowledge that there influence of mitochondria on the activation of the programmed cellular death led to formulate the hypothesis that nuclear fragmentation absence in embryos before 72 post insemination is related with absence of mitochondrial membrane potential and OXPHOS blockage by inhibiting agents, would cause the maintenance of low levels of mitochondrial membrane potential and low rates of embryo nuclear fragmentation. Embryos were cultured in vitro for 18 hours post insemination (hpi) and after 24 hpi, they were submitted to 0% oxygen culture, in order to block the OXPHOS process. At 48 hpi, feeding was performed with SOF medium containing OXPHOS inhibitors (antimycin A and/or oligomycin, potassium cyanide) in different concetrations. The numbers of 8 cell embryos were estimated at 80 hpi, the same moment that they were submitted to JC-1 probes and TUNEL for mitochondrial membrane potential and DNA damages evaluation, respectively. At 168 hpi the effect of the treatments was verified on embryonic development. The results obtained with the OXPHOS inhibition after 48 after hpi using oligomycin and/or antimycin A did not modify embryo capacity to reach 8 cell stage. However, this inhibition prevented development to the blastocyst stage. KCN treatment allowed development up to the 8 cell stage and blastocyst similar to controls. The absence of O2 prevented embryo development. The Ψmm and TUNEL results showed that antimycin and/or oligomycin treatment increased Ψmm and nuclear fragmentation in the majority of the embryos tested. In conclusion, it was not possible to test the hypothesis that Ψmm is necessary to the establishment of MCP, but a positive correlation between Ψmm and nuclear fragmentation was observed.

As plantas, assim como outros organismos, possuem a capacidade de se defenderem contra ataque de patógenos. Uma das respostas desencadeadas pelo reconhecimento do patógeno pelas células vegetais é a reação de hipersensibilidade (RH), que envolve a morte imediata das células do sítio primário de infecção, oferecendo resistência ao crescimento do patógeno. Muitas evidências sugerem a participação da mitocôndria neste processo de morte celular programa. O nim (Azadirachta indica) é conhecido devido as suas propriedades medicinais e inseticidas, sendo que os estudos sobre a ação inseticida dessa planta restringem-se a análise de seus mecanismos de ação sobre insetos e também de seus efeitos sobre trabalhadores rurais que fazem uso de produtos a base de nim. Entretanto não há na literatura pesquisada, trabalhos de seus impactos sobre o sistema vegetal. A partir dos resultados previamente obtidos em nosso laboratório e com as análises dos dados da literatura, consideramos de grande importância dar continuidade a esse estudo do efeito do nim como elicitor, avaliando quais mecanismos que levam ao fenômeno de resistência vegetal. O extrato de nim (EB) foi preparado a partir das sementes, sendo caracterizado bioquimicamente pela quantificação de compostos fenólicos, açúcares e proteínas. A atividade antioxidante foi avaliada sendo possível observar que o extrato das sementes de nim possui forte atividade antioxidante de maneira dose-dependente com IC50 de 14,85 mg/mL. Para os ensaios biológicos foi utilizado EB nas concentrações de 0,1 a 5 mg/mL isolado ou em associação com AS a 1 µmol/L ou 1 mmol/L. Para determinação da morte celular foi observado o efeito do EB nas concentrações de 5 e 0,1 mg/mL isolado ou em associação com AS 1 µmol/L nos tempos de 0 a 8 horas. Diante dos resultados foi observado que o EB na concentração de 0,1 mg/mL isolado ou em associação com AS 1 µmol/L foi capaz de causar morte celular em células de Rubus fruticosus de forma mais significativa do que o EB isolado ou em associação com AS na concentração de 5 mg/mL. No tempo de 8 horas, foi observado uma porcentagem de morte celular de 64 % para células elicitadas com EB 0,1 mg/mL isolado e 71 % para células elicitadas com EB 0,1 mg/mL em associação com AS. A diminuição da produção de EROs e da produção de AS endógeno bem como o aumento da produção de compostos fenólicos foi observado em células intactas elicitadas com EB isolado. No entanto quando a células foram elicitadas com EB em associação com AS observamos uma diminuição da produção de compostos fenólicos com o aumento da produção de AS endógeno. Em mitocôndrias isoladas foi avaliado o consumo de oxigênio, o potencial de membrana e a produção de EROs com o EB isolado e sua associação com AS 1 mmol/L. Foi observado que o EB isolado ou em associação com AS foi capaz de diminuir a velocidade de consumo de oxigênio pela cadeia respiratória sendo este efeito mais acentuado quando o nim foi administrado juntamente com AS, onde a porcentagem de inibição da velocidade de consumo de oxigênio pela cadeia respiratória na presença de EB em associação com AS foi de 79 % no estado 3 da respiração e 62 % no estado 4. Sobre o potencial de membrana observamos que o EB isolado ou em associação com AS foi capaz de diminuir o potencial de membrana, porém de forma pouco significativa. Para a produção de EROs observamos que o EB isolado foi capaz de diminuir a produção de EROs em mitocôndrias isoladas em cerca de 55 a 20 % na presença de antimicina A e 39 a 10 % na presença de rotenona, porém quando o EB foi administrado juntamente com AS observamos uma diminuição da produção de EROs somente para o EB nas concentrações de 0,5; 1 e 5 mg/mL. Com os resultados apresentados neste trabalho e os resultados obtidos anteriormente em nosso laboratório é possível sugerir que o extrato das sementes de nim possui um efeito protetor sobre células de Rubus fruticosus. / Plants, like other organisms, have the capacity to defend themselves against attack by pathogens. One of the responses triggered by pathogen recognition by plant cells is the hypersensitive response (HR), which involves the immediate death of cells in the primary site of infection, providing resistance to the pathogen growth. In this regard, it has been well established that mitochondria are involved in cell death. The neem tree (Azadirachta indica) is known due to its medicinal and insecticidal properties; studies on the insecticidal action of this plant had been restricted to the analysis of their action mechanisms on insects and their effects on rural workers who use neem-based products. However, its impact on plant systems has not been addressed. Considering previous results from our laboratory and literature data we assessed the effects of neem as elicitor, particularly the mechanisms leading to the phenomenon of plant resistance. The neem extract (EB) was prepared from the seeds, characterized biochemically by quantification of phenolic compounds, sugars and proteins. The extract showed strong dose-dependent antioxidant activity (IC50 of 14.85 mg/mL). EB concentrations of 0.1-5 mg/mL, alone or in association with 1 mol/L or 1 mmol/L SA (salicylic acid), were used for the biological assays. For cell death assays, EB was employed in concentrations of 0.1 and 5.0 mg/mL, alone or in association with 1 mol/L SA, during 0-8 hours. EB (0.1 mg/mL), alone or in association with 1 mol/L SA, induced Rubus fruticosus cell death more efficiently than EB alone or in association with 5 mg/mL SA. After 8 hours, a 64% of death of cells elicited with 0.1 mg/mL EB and 71% of death of cells elicited with 0.1 mg/mL EB in association with SA, was observed. Decrease in ROS generation and production of endogenous SA, as well as increased production of phenolic compounds, was observed in intact cells elicited with EB alone. However, when cells were elicited with EB in association with SA, a decreased production of phenolic compounds and an increased production of endogenous SA, was observed. In isolated mitochondria, it was measured oxygen consumption, membrane potential and ROS production for EB alone or in association with 1 mmol/L SA. In either conditions, EB decreased oxygen consumption by the respiratory chain, an effect more pronounced in association with SA: ~79 % inhibition for state 3 and ~ 62 % for state 4 respiration. Also, either neem alone or in association with SA decreased mitochondrial membrane potential, as well as ROS generation to an extent of 55-20% in the presence of antimycin A and 39-10% in the presence of rotenone; in association with SA, EB decreased ROS at 5, 1 and 0.5 mg/mL. Together with our previous study, these results suggest that neem seeds extract has a protective effect on Rubus fruticosus cells by scavenging, via phenolic compounds, reactive oxygen species generated by SA, thereby decreasing its action as cell death inducer.

A cana-de-açúcar é uma das principais culturas agrícolas no cenário econômico e social brasileiro. Na cultura de cana-de-açúcar o estresse hídrico é o principal fator limitante para o aumento de produtividade, sendo responsável por alterações fisiológicas, bioquímicas e moleculares nas plantas, que podem deflagrar perturbações metabólicas que ativam a morte celular programada (MCP). Sabendo-se que o gene BI-1 apresenta o potencial de reduzir os efeitos da MCP desencadeado por estresses bióticos e abióticos em plantas, este trabalho teve como objetivo analisar plantas transgênicas de cana-de-açúcar que expressam o gene BI-1 de Arabidopsis thaliana (AtBI-1) em condições de estresse hídrico. Também, plantas transgênicas e controle foram inoculadas com o fungo Puccinia melanocephala demonstrando que o processo de transformação genética com o gene AtBI-1 alterou as características pré existentes de resistência a ferrugem marrom nas plantas transgênicas. Os estudos de tolerância ao défict hídrico foram realizados em dois experimentos, o experimento 1 com plantas transgênicas e controles de 90 dias e o experimento 2 com plantas de 60 dias. Plantas do experimento 1 foram analisadas quanto características morfológicas como número de estômatos e tricomas, altura e circunferência do colmo e após ficarem 24 dias sem água foram analisadas quanto a taxa fotossintética, comportamento estomático e conteúdo relativo de água nas folhas, enquanto no experimento 2 as plantas foram analisadas quanto aos teores de prolina, atividades das enzimas guaiacol peroxidase (GPOX), ascorbato peroxidase (APX) e catalase (CAT) após as plantas ficarem 17 dias sob déficit hídrico. Estas enzimas estão envolvidas em processos de desativação de elementos ativos de oxigênio. Os resultados demonstraram que as plantas transgênicas expressando o gene AtBI-1 possuem fenótipo de menor altura, e maior taxa fotossintética, maior comportamento estomático e maior conteúdo relativo de água nas folhas, e assim apresentam maior tolerância ao déficit hídrico que plantas controle. Contudo, houve baixo acúmulo de prolina, baixa atividade da GPOX, APX e CAT nas plantas transgênicas durante o estresse hídrico comparada com as plantas controle do mesmo tratamento. Porém foi observado alta atividade constitutiva da catalase nas plantas transgênicas. A atividade da catalase nestas plantas transgênicas sugere a possibilidade da interação entre AtBI-1 e calmudolinas. Futuros estudos podem contribuir para elucidar se a proteína BI-1 é essencial para a ativação das catalases por calmudolinas. / Sugarcane is one of the main agricultural crops in the Brazilian social and economic scenario. Water stress in the culture of sugarcane is the main limiting factor for increasing productivity accounting for physiological, biochemical and molecular plants that can trigger metabolic disturbances activating programmed cell death (MCP). Knowing that the BI-1 gene has the potential to reduce the effects of MCP triggered by biotic and abiotic stresses in plants, this study aimed to analyze transgenic sugarcane that express the BI-1 gene of Arabidopsis thaliana (AtBI-1) under water stress. Also, transgenic and control plants were inoculated with Puccinia melanocephala fungus demonstrating that the genetic transformation process with the AtBI-1 gene altered the pre-existing characteristics of brown rust resistance in transgenic plants. Studies of tolerance to water deficit were performed in two experiments, the experiment 1 was prepared with transgenic and control plants with 90 days and the experiment 2 used plants with 60 days. Plants from experiment 1 were analyzed as for morphological characteristics such as number of stomata and trichomes, height and diameter of stem after plants being under water for 24 days as were analyzed photosynthetic rate, stomatal behavior, relative water content in leaves while in the experiment 2, plants were analyzed for the levels of proline, enzyme activities of guaiacol peroxidase (GPOX), ascorbate peroxidase (APX) and catalase (CAT) under water deficit for 17 days. These enzymes are involved in deactivation of active elements oxygen. The results demonstrated that the transgenic plants expressing the AtBI-1 gene presented the phenotype of lower height, higher index of leaf area, higher photosynthetic rate, higher stomatal behavior and higher relative water content in leaves than control plants increasing tolerance to drought stress. However, there were low levels of proline, low activity of GPOX activity, APX and CAT in transgenic plants during drought stress compared to control plants of the same treatment, but the observed high constitutive activity of catalase in transgenic plants. Catalase activity in these transgenic plants suggests the possibility of interaction between AtBI-1 and calmudolinas. Future studies may contribute to understand whether the BI-1protein is essential for the activation of catalase by calmudolinas.

L'ozone troposphérique est un polluant secondaire majeur. Outre son rôle de gaz à effet de serre direct, l'ozone fait partie des polluants atmosphériques les plus toxiques et la pollution qu’elle engendre, affecte aussi bien la santé humaine que la productivité végétale. Les travaux présentés dans cette thèse porte sur l’étude du rôle des canaux ioniques de la membrane plasmique en réponse à une forte exposition à l’ozone ainsi que leurs interactions avec les évènements de signalisation mis en place lors du processus de PCD induit par ce stress sur des cellules en culture d’A. thaliana. Nous avons montré que cette mort cellulaire génétiquement contrôlée est caractérisée par une plasmolyse semblable à « l’Apoptosis Volume Decrease » (AVD) décrit en animal. Ce processus est promu par des cascades de signalisation où, dans un premier temps, les canaux anioniques sont très précocement activés potentiellement par l’acide oxalique issu de la dégradation de l’ascorbate par l’O3. Les données suggèrent une interconnexion entre les courants anioniques, l’influx cacique et une génération de ROS dépendante de la NADPH oxydase. Dans un deuxième temps, des canaux K+ rectifiants sortants sont activés de manière retardée et participent à la PCD. Cette activation retardée pourrait être due à une régulation post-transcriptionnelle des canaux GORK induite par l’O2•-. Enfin, nous avons également mis en évidence des activités enzymatiques de type caspase, au niveau cytoplasmique et nucléaire. Ces activités enzymatiques semblent être corrélées à la baisse de la teneur vacuolaire en ions K+, mais des données complémentaires sont nécessaires afin de comprendre les mécanismes sous-jacents. Ce travail souligne l’importance et la complexité de la régulation des canaux anioniques et potassiques et ce, dans les processus de signalisation et la mécanistique menant à la mort cellulaire programmée chez les plantes. / Tropospheric ozone is a major secondary pollutant. In addition to its role in greenhouse effect gas, ozone is one of the most toxic air pollutants, and its pollution affects both human health and crop productivity. The work presented in this thesis concerns the role of ion channels in the plasma membrane in response to acute exposure to ozone and their interactions with signaling events leading to O3-induced PCD in A. Thaliana cultured cells. We have shown that cell death was genetically controlled and characterized by cell shrinkage similar to the mechanism of "Apoptosis Volume Decrease" (AVD) described in animal. This process is initially promoted by an early activation of a plasma membrane anion channel, amongst which ascorbate-derived oxalic acid production potentially participates to this activation. Our data further suggests an interplay between anion channel with well known plant responses to O3, Ca2+ influx and NADPH-oxidase generating reactive oxygen species (ROS) in mediating the oxidative cell death. In a second step, K+ outwards rectifying currents are activated in a delayed manner and participate to PCD. This delayed activation could be due to O2•- post-transcriptional regulation of GORK channels. Finally, we also demonstrated caspase-like activities in the cytoplasm and the nucleus. These enzyme activities appear to be correlated with the decrease in vacuolar K+ ion content, but require additional data to understand the underlying mechanisms. This work highlights the importance and the complexity of ion channels regulation in the signaling pathway and the mechanistic processes leading to programmed cell death in plants.

La Mort Cellulaire Programmée (MCP) est un processus essentiel pour plusieurs aspects de la vie des plantes, incluant le développement et les réponses aux stress. Des analyses génétiques ont permis d’identifier plusieurs acteurs clés de la MCP chez Arabidopsis thaliana,, dont l’enzyme MIPS1, qui catalyse une étape limitante de la biosynthèse du myo-inositol (MI), composé cellulaire majeur à l’origine de nombreux dérivés. Une des caractéristiques les plus importantes du mutant mips1, désactivé pour cette protéine, est l’apparition de lésions sur les feuilles de rosette, dépendante des conditions lumineuses et due à de la MCP impliquant la voie de l’acide salicylique. Ces données avaient permis de révéler un rôle du MI, ou de ses dérivés, dans le contrôle de la MCP. Mon travail de thèse a consisté à rechercher et à caractériser des suppresseurs du mutant mips1 par deux approches complémentaires : une approche gène candidat par comparaison de transcriptome et une stratégie de génétique directe suite au crible de mutations secondaires extra-géniques abolissant le phénotype de mort cellulaire de mips1. Les analyses effectuées sur différents suppresseurs ont mis en évidence l’implication de plusieurs facteurs dans la MCP, tels que le facteur de polyadénylation CPSF30, d’une héxokinase ou encore de la protéine PCB2 intervenant dans la biosynthèse de la chlorophylle. La caractérisation de ces suppresseurs a permis de démontrer l’importance de différentes voies comme la maturation des ARNm, le métabolisme carboné primaire ou l’activité chloroplastique dans le contrôle de la MCP dépendante de l’accumulation de MI. Ce travail apporte de nombreuses perspectives, visant à mieux appréhender les différentes voies de régulation de la MCP indispensables pour un développement correct et pour faire face à des stress biotiques et abiotiques chez les plantes. / Programmed cell death (PCD) is essential for several aspects of plant life, including development and stress responses. Mutational analyses have identified several key PCD components in Arabidopsis thaliana, as the enzyme MIPS1 catalysing the limiting step of myo-inositol (MI) synthesis, crucial cellular compound at the root of many derivatives. One of the most striking features of mips1, disrupted for this protein, is the light-dependent formation of lesions on leaves due to Salicylic Acid (SA)-dependent PCD, revealing roles for MI or inositol derivatives in the regulation of PCD. My thesis work was to find and characterize suppressor of mips1 mutant using two complementary approaches: a gene candidate approach by transcriptomic comparisons and a strategy of direct genetic by screening for extra genic secondary mutations that abolish mips1 cell death phenotype. Analysis of different suppressors revealed the involvement of several factors in MCP, such as the polyadenylation factor CPSF30, a hexokinase or the protein PCB2 operating in chlorophyll biosynthesis. Characterization of these suppressors allowed us to demonstrate crucial role of functions as mRNA maturation, primary carbohydrate metabolism or chloroplastic activity in the regulation of MCP depending on MI accumulation. This work brings many opportunities, to better understand the different regulatory pathways of PCD essential for proper development and to cope with biotic and abiotic stress in plants.

Cells of the retinal pigment epithelium (RPE) are generated prenatally and generally survive the lifetime of the individual without undergoing proliferation or replacement. Therefore, the mechanisms promoting individual RPE cell survival and longevity in vivo may be distinct from, or a limited subset of, the mechanisms known to promote survival in proliferative cells in culture. To identify specific factors that sustain cell viability independent of effects on cell division, we studied RPE cells in low-density suspension culture, in which cell proliferation is inhibited. Single cells from Xenopus laevis eyes were plated onto a non-adhesive surface in protein-free medium, then assayed for survival using the 3-(4, 5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) assay. Cell viability in these cultures was essentially undiminished over the initial 2 days. However, by approximately 1 week in culture, only an average of 53% of the cells remained alive. Plating cells on a fibronectin-coated substratum significantly enhanced survival, such that the number of cells alive at 1 week was 80-90% of the initial level. Essentially identical results were obtained with laminin- or collagen IV-coated substrata, or with insulin (5μg ml-1) in the medium. The absence of cell division in these cultures was confirmed by cell counting and BrdU incorporation experiments. Interestingly, in suspension cultures derived from monolayers previously established on microporous membrane filters, cells lost viability much faster (average of 80% dead at 3 days), and showed a relatively greater response to extracellular matrix proteins (five-fold increase in cell survival at 3 days). Enhanced RPE survival in response to fibronectin required spreading of the cell on a substratum, rather than mere adherence, as there was a high correlation between the percentage of spread cells and the percentage that were MTT-positive (r = 0·940). Cell spreading apparently enhanced survival by preventing the initiation of programmed cell death: unattached non-viable cells in culture exhibited morphological features expected of apoptosis, as well as positive staining by the TUNEL reaction. These studies demonstrate that, of several factors shown to maintain or increase cell number in proliferating cultures, some have their effect, at least in part, by promoting the survival of individual cells. The increased susceptibility of subcultured RPE to cell death has implications for clinical transplantation applications that may require manipulation of RPE in vitro.

L’oxygène singulet ($^1O_2$) est la principale espèce réactive de l’oxygène produite dans le chloroplaste lors d'un stress photo-oxydant. L’$^1O_2$ est hautement cytotoxique s'attaquant aux protéines et lipides membranaires. L’$^1O_2$ est une molécule signal impliquée dans une signalisation rétrograde entre les chloroplastes et le noyau via des médiateurs, menant à la mort cellulaire programmée (MCP), ou à l’acclimatation. Nous avons caractérisé l’implication de la phytohormone salicylate, agissant en aval de la signalisation de la MCP dépendante d’OXI1 (OXIDATIVE SIGNAL INDUCIBLE 1) et du jasmonate. Nous avons mis en évidence une voie de régulation négative faisant intervenir des protéines inhibitrices de la MCP : DAD1 et DAD2. La sur-expression de ces protéines permet à la plante d’éviter de la MCP en inhibant la signalisation contrôlée par OXI1. Dans le Réticulum Endoplasmique (RE) a lieu la conformation d’une grande partie des protéines. Une perturbation dans ce compartiment induit l’activation d’une réponse adaptative appelée l’UPR (Unfolded Protein Response). Nous avons monté que la production d’$^1O_2$ active l’UPR. L’acclimatation à la forte lumière (FL) fait intervenir la branche bZIP28/BiP3 de l’UPR. Un pré-traitement modéré d’un inducteur de stress RE (tunicamycine), induisant l'UPR, déclenche une réponse d’acclimatation à l’$^1O_2$ permettant l’évitement de la MCP lors de l’exposition à la FL. Nous avons réalisé un crible génétique pour rechercher des révertants du mutant \textit{ch1} (un surproducteur d’1$^1O_2$) où l’inhibition de la croissance par l’$^1O_2$ est partiellement levée. Les gènes candidats identifiés feront l’objet d’études complémentaires. / Singlet oxygen ($^1O_2$) is a major reactive oxygen species produced within the chloroplasts during high light (HL) stress. $^1O_2$ has a cytotoxic effect due to its high reactivity towards macromolecules including proteins and membrane lipids. $^1O_2$ also acts as a signal molecule that plays a role in chloroplast-to-nucleus retrograde signaling involving mediators and leading either to programmed cell death (PCD) or to stress acclimation.We have shown the involvement of the phytohormone salicylic acid in HL-induced cell death, acting downstream of the OXI1 kinase and jasmonate. We have also shown a negative regulation of this signaling pathway by PCD inhibitory proteins: DAD1 and DAD2 (DEFENDER AGAINST CELL DEATH 1 and 2). Overexpressing those proteins inhibits OXI1-mediated PCD. Protein folding of most secreted proteins takes place in the Endoplasmic Reticulum (ER). Perturbations in this compartment lead to the activation of an adaptive response called UPR (Unfolded Protein Response). When ER stress is too intense, NRPs-mediated ER stress-induced cell death is activated. We have shown that 1O2 production activates UPR. In particular, the bZIP28/BiP3 UPR branch is activated during acclimation to HL. The induction of UPR by a chemical inducer of ER stress (Tunicamycin) can induce acclimation to $^1O_2$ production and can avoid HL-induced PCD.We performed a genetic screen to search for revertants of the $^1O_2$ overproducing \textit{ch1} mutants in which growth inhibition by$^1O_2$2 is partially released. The candidate genes will have to be confirmed by further phenotypic studies.

Previously it has been shown that cultures of Plasmodium falciparum died following exposure to a febrile temperature of 40°C, as demonstrated by a decrease in parasitemia of the following generation. In the current study, the effect of 40°C treatment on culture media, erythrocytes, and parasite glucose consumption, were ruled out as possible influences on parasite death, demonstrating that 40°C impacted the parasites directly. Metabolic profiling of DNA synthesis, protein synthesis, and glucose utilization during exposure to 40°C clearly indicated that febrile temperatures had direct effect on major metabolic pathways and parasite development, beginning 20-24 hr after erythrocyte invasion. The ring stages were relatively refractory to heat and recovered completely if returned to 37°C. The mechanism of parasite death was investigated for evidence of an apoptosis-like pathway in cells treated with 40°C, chloroquine, and staurosporine. Lack of typical physiological hallmarks, namely, caspase activation, characteristic mitochondrial membrane potential changes, and DNA degradation as indicated by DNA laddering, eliminated ‘classical’, apoptosis as a mechanism of parasite death. Parasites dying under the influence of 40°C, staurosporine, and chloroquine initially appeared pyknotic in light and electron microscopy, as in apoptosis, but eventual swelling and lysis of the food vacuole membrane led to secondary necrosis. Initially, chloroquine did induce DNA laddering, but it was later attributed to occult white blood cell contamination. While not apoptosis, the results do not rule out other forms of temperature-induced programmed cell death.

B cells and in particular IL-10-secreting B cells emerge as important players in immune balance during pregnancy. We have recently revealed that CD19-deficient (CD19−/−), B cell-specific IL-10-deficient (BIL-10−/−) and B cell-deficient µMT pregnant mice are highly susceptible to LPSinduced preterm birth (PTB). We aimed to analyze the ability of IL-10-secreting cells to protect from PTB and the underlying mechanisms. Wild type (WT), CD19−/−, BIL-10−/− and µMT mice were treated with LPS at gd16 and the cellular immune response was investigated 24 h later. LPS-treated BIL-10−/− dams showed a more pronounced PTB phenotype compared to WT, CD19−/− and µMT females, and increased inflammatory and reduced anti-inflammatory mediator concentrations in the peritoneal cavity and serum. CD19−/−, BIL-10−/− and µMT mice displayed altered immune cell population frequencies in the blood and uterus with lower numbers of IL-10-secreting B cells and T cells. BIL-10−/− mothers presented decreased frequencies of uterine CD4+CD25+Foxp3+ Treg cells. Co-stimulatory molecules are critical for feto-maternal tolerance and IL-10 secretion. We found dysregulated PD-1 expression in peripheral blood and ICOS expression in the uterus of CD19−/−, BIL-10−/− and µMT dams. Our data show that B cell-specific IL-10-signaling is essential for a balanced maternal immune response to an inflammatory stimulant that cannot be hampered without IL-10-secreting B cells.