Na África subsaariana, as serpentes do gênero Bitis são de extrema importância, pois suas vítimas apresentam sintomas como dano local, hemorragia e uma severa hipotensão. Este trabalho identificou moléculas capazes de inibir a atividade da enzima conversora de angiotensina I (ECA) presentes no veneno de quatro serpentes do gênero Bitis. Para isto, as porções de baixa massa molecular desses 4 venenos foram fracionadas em RP-HPLC e as frações com boa inibição sobre a atividade da ECA foram analisadas por espectrometria de massas. Foram identificados 34 oligopeptídeos ricos em prolina (PRO), sendo 8 sintetizados e suas constantes de inibição (Ki) determinadas. Em testes com substratos naturais da ECA, angiotensina I e bradicinina, foi constatada a maior inibição da hidrólise da angiotensina I por quatro PROs. Todos os PROs in vivo reduziram a pressão arterial, e seis deles aumentaram a frequência cardíaca em ratos Wistar. Com isto, conclui-se que existem toxinas no veneno de serpentes do gênero Bitis responsáveis pela hipotensão. / In the sub-saharian Africa, snakes from the Bitis genus are of extreme medical importance, since its victims show symptoms as local tissue damage, hemorrhage and a severe hypotension. This work identified molecules that inhibit the angiotensin I converting enzyme (ACE) in the venom of 4 snakes from the Bitis genus. The low molecular portions of the venom of these snakes were fractionated in RP-HPLC and the fractions that efficiently inhibited the ACE activity were analyzed by mass spectrometry. 34 proline-rich oligopeptides were identified, 8 of them synthesized and had their inhibition constants (Ki) determined. In tests using natural substrates of ACE, angiotensin I and bradykinin, the angiotensin I hydrolysis were better inhibited by four PROs. In vivo tests results showed that all PROs decreased the mean arterial pressure and six of them increased the heart rate. Therefore, we can conclude that there are toxins present in the venom of Bitis capable of cause hypotension.

Les azacycles tels que les morpholines ou les pyrrolidines, sont très répandus dans le domaine de l’organocatalyse et de la chimie médicinale. Cette thèse traitera d’analogues contraints de ces azacycles, qui peuvent moduler de par leurs structures, les propriétés de certains médicaments ou la sélectivité de certaines réactions. Le cas de l’halopéridol, qui est connu pour son activité sur les récepteurs dopaminergiques D2 et D4, est au centre de la première partie de cette thèse, dans laquelle de nouveaux analogues contraints de type 2-oxa-5-azabicyclo[2.2.2]octane ont été développés pour pallier ses problèmes de stabilité métabolique. Dans une seconde partie, la synthèse de deux nouvelles chimères morpholine-proline pontées est rapportée. Leurs structures rigides et conformationnellement verrouillées permettent aux doublets d’électrons non liants sur les atomes d'azote et d'oxygène d’être respectivement orientés dans des directions « Est-Ouest » et « Nord-Est » spatialement différentes. En combinaison avec la présence d'un acide carboxylique, les propriétés électroniques de ces composés peuvent être utiles dans le contexte de la conception peptidomimétique de composés biologiquement pertinents. Des estimations quantitatives de la basicité des atomes d'azote ont été obtenues en utilisant une analyse DFT conceptuelle. Dans la troisième partie de cette thèse, la synthèse de nouvelles pyrrolidines oxabicycliques sera développée. Les cyclopentan[c]pyrroles sont très répandus dans la littérature, et connus pour leurs propriétés analgésiques. Des dérivés fonctionnalisés en positions 4 et 5, synthétisés par Servier, ont notamment présenté de bonnes activités en tant que ligands nicotiniques 7, mais aussi des problèmes d’inhibition de hERG. Afin d’obtenir des composés moins lipophiles et donc de pallier les problèmes d’inhibition hERG, de nouveaux analogues oxygénés de type furo[2,3-c]pyrroles ont été développés par différentes voies de synthèse. Ces nouveaux composés pourront notamment être obtenus sous formes énantiomériquement enrichies, grâce à une étape clé de résolution enzymatique. La proline a été largement utilisée ces dernières années comme organocatalyseur au sein d’importantes transformations asymétriques comme les aldolisations ou les additions de Michael. Cependant, malgré le succès de ce motif, plusieurs de ses dérivés ont été rapportés dans la littérature. C’est notamment le cas des 4,5-méthanoprolines qui furent rapportées pour la première fois par Hanessian en 1997, dont l’efficacité en tant qu’organocatalyseur pour la réaction de Hajos-Parrish ainsi que plusieurs autres types de réaction fut par la suite établie. Les dernières parties de cette thèse viennent compléter ces études. La synthèse de nouvelles 4,5-ethanoprolines a été développée, ainsi que leurs utilisations comme catalyseur lors de réactions de Hajos-Parrish et d’addition catalytique asymétrique de nitroalcanes sur des énones cycliques. Une étude DFT a été effectuée afin d’expliquer l’inversion de sélectivité observée pour ces nouveaux catalyseurs lors des réactions de Hajos-Parrish, le mécanisme de formation des énamines réactives a aussi été investigué. / Azacycles such as morpholines and pyrrolidines, are very widespread in chemistry, especially in the fields of organocatalysis and medicinal chemistry. This thesis will deal with constrained analogues of those azacycles, which, depending on their structures, can modulate the properties of certain drugs or the selectivity of certain reactions. The case of haloperidol, which is known for its activity on the dopamine D2 and D4 receptors, is at the center of the first part of this thesis, in which new constrained analogs of the 2-oxa-5-azabicyclo type [2.2.2] octane have been developed to overcome its metabolic stability problems. In a second part, the synthesis of two new bridged morpholine-proline chimeras are reported. Their rigid structures allow the lone pairs on the nitrogen and oxygen atoms to be oriented in spatially different "East-West" and "North-East" directions, respectively. In combination with the presence of a carboxylic acid, the electronic properties of these compounds could be useful in the context of the design of biologically relevant peptidomimetics. Quantitative estimations of the basicity of the nitrogen atoms were obtained using DFT analysis. In the third part of this thesis, the synthesis of new oxabicyclic pyrrolidines is described. Cyclopentan[c]pyrroles are widely encountered and known for their analgesic properties. The Servier laboratories have synthesized derivatives with substituents at positions 4 and 5, exhibiting good activities as 7 nicotinic ligands, but problems of hERG inhibition. In order to obtain less lipophilic compounds and therefore overcome the problems of hERG inhibition, new oxygenated analogs of the furo[2,3-c]pyrrole type have been developed by different synthetic routes. These new compounds were obtained in enantiomerically enriched forms, using enzymatic resolution. Proline has been widely used in recent years as an organocatalyst in asymmetric transformations such as aldolizations or Michael additions The success of this motif, has inspired synthesis of derivatives, such as 4,5-methanoprolines, which were first reported by Hanessian in 1997, and shown to be effective as organocatalysts in the Hajos-Parrish and other reactions. The last parts of this thesis develop further these studies by the synthesis of new 4,5-ethanoprolines which act as a catalysts in the Hajos-Parrish reaction and the asymmetric catalytic addition of nitroalkanes to cyclic enones. A DFT study was carried out to explain the reversal of selectivity observed for the new catalysts in Hajos-Parrish reaction and to investigate formation of a reactive enamine in the mechanism.

The Gram-negative bacterium Pseudomonas aeruginosa is a life-threatening nosocomial pathogen due to its generally low susceptibility toward antibiotics. Furthermore, many strains have acquired resistance mechanisms requiring new antimicrobials with novel mechanisms to enhance treatment options. Proline-rich antimicrobial peptides, such as the apidaecin analog Api137, are highly efficient against various Enterobacteriaceae infections in mice, but less active against P. aeruginosa in vitro. Here, we extended our recent work by optimizing lead peptides Api755 (gu-OIORPVYOPRPRPPHPRL-OH; gu = N,N,N′,N′-tetramethylguanidino, O = L-ornithine) and Api760 (gu-OWORPVYOPRPRPPHPRL-OH) by incorporation of Ile-Orn- and Trp-Orn-motifs, respectively. Api795 (gu-O(IO)2RPVYOPRPRPPHPRL-OH) and Api794 (gu-O(WO)3RPVYOPRPRPPHPRL-OH) were highly active against P. aeruginosa with minimal inhibitory concentrations of 8–16 and 8–32 μg/mL against Escherichia coli and Klebsiella pneumoniae. Assessed using a quartz crystal microbalance, these peptides inserted into a membrane layer and the surface activity increased gradually from Api137, over Api795, to Api794. This mode of action was confirmed by transmission electron microscopy indicating some membrane damage only at the high peptide concentrations. Api794 and Api795 were highly stable against serum proteases (half-life times >5 h) and non-hemolytic to human erythrocytes at peptide concentrations of 0.6 g/L. At this concentration, Api795 reduced the cell viability of HeLa cells only slightly, whereas the IC50 of Api794 was 0.23 ± 0.09 g/L. Confocal fluorescence microscopy revealed no colocalization of 5(6)-carboxyfluorescein-labeled Api794 or Api795 with the mitochondria, excluding interactions with the mitochondrial membrane. Interestingly, Api795 was localized in endosomes, whereas Api794 was present in endosomes and the cytosol. This was verified using flow cytometry showing a 50% higher uptake of Api794 in HeLa cells compared with Api795. The uptake was reduced for both peptides by 50 and 80%, respectively, after inhibiting endocytotic uptake with dynasore. In summary, Api794 and Api795 were highly active against P. aeruginosa in vitro. Both peptides passed across the bacterial membrane efficiently, most likely then disturbing the ribosome assembly, and resulting in further intracellular damage. Api795 with its IOIO-motif, which was particularly active and only slightly toxic in vitro, appears to represent a promising third generation lead compound for the development of novel antibiotics against P. aeruginosa.

(EN) This work aims at preparation, analysis and isolation of intermediates of biosynthetic pathways of 4-alkyl-L-proline derivatives for their structural elucidation. Compounds with incorporated 4-alkyl-L-proline derivatives include clinically used lincosamide antibiotic, lincomycin A, antitumor pyrrolobenzodiazepines and bacterial hormone hormaomycin. Detailed knowledge of biosynthetic pathways of these biological active substances can be used to prepare new, more efficient derivatives. The first part of this work focuses on yellow-coloured dicarboxylic intermediates 1 and 2 of the biosynthetic pathway of 4-propyl-L-proline - the precursor of lincomycin A. In the presence of the methylation agent, S-adenosyl-L-methionine, and LmbW C- -methyltransferase, 1 was partially converted into intermediate 2. Using ultra-high performance liquid chromatography, both intermediates were identified from absorption and mass spectrometry spectra. A semi-preparative chromatographic method for isolation of both intermediates was developed. Surprisingly, a significantly lower stability of 2 compared to intermediate 1 was observed in an in vitro enzymatic reaction mixture. The second part of the work focuses on 4-ethylidene-L-proline - the precursor of tomaymycin belonging to pyrrolobenzodiazepines. After...

Mémoire numérisé par la Direction des bibliothèques de l'Université de Montréal.

[ES] Durante siglos de cultivo en la Península Ibérica después de su introducción en el siglo XVI, las judías se adaptaron a nuevos entornos, evolucionando numerosas variedades locales. Se evaluaron cultivares españoles locales de Phaseolus lunatus (frijol lima) y su resistencia a la salinidad, en dónde se expusieron las plantas a varios tratamientos de sal, con el fin de evaluar el efecto de la salinidad en el crecimiento y el rendimiento del cultivo. Se observó que el estrés salino redujo el peso fresco de los órganos aéreos, lo que permitió clasificar los cuatro genotipos según su tolerancia a la salinidad. la prolina aumentó en todos los cultivares, más notablemente en el cv. VPH-79, con las concentraciones absolutas más altas registradas en los cultivares más tolerantes a la sal. Estos hallazgos indican que P. lunatus es moderadamente tolerante a la sal y que sus principales mecanismos para adaptarse al estrés salino son el mantenimiento de altas concentraciones de K+ y la acumulación de prolina en las hojas. Por otra parte, se analizaron en invernadero 24 genotipos locales de P. vulgaris de España durante dos temporadas consecutivas. De cada genotipo, se cultivaron cinco plantas y se caracterizaron (17 rasgos cuantitativos y 15 cualitativos) utilizando los descriptores del IBPGR. Los resultados obtenidos indican una alta variabilidad para la mayoría de los rasgos, especialmente los relacionados con el rendimiento y sus componentes. Además, se analizaron las respuestas a los tratamientos por déficit hídrico y estrés salino, en cuanto a inhibición del crecimiento y contenido de prolina foliar (Pro), en 47 genotipos de Phaseolus vulgaris de diferentes orígenes. Para la mayoría de las variables de crecimiento analizadas y Pro, los efectos del cultivo, el tratamiento y sus interacciones fueron altamente significativos (p<0.001); los rasgos morfológicos de las raíces, el diámetro del tallo y el número de hojas se debieron principalmente a una variación incontrolada, mientras que la variación del peso fresco y el contenido de agua de los tallos y las hojas fue inducida claramente por el estrés. Bajo las condiciones experimentales, los efectos promedio del estrés salino sobre el crecimiento de las plantas fueron relativamente más débiles que los del déficit hídrico. . Pro, por su parte, fue la única variable que mostró una correlación negativa con todos los parámetros de crecimiento, pero particularmente con los de tallos y hojas mencionados anteriormente, como lo indican los coeficientes de correlación de Pearson y los PCA. Se propone el uso de Pro como un marcador bioquímico adecuado para exámenes simples, rápidos y a gran escala de genotipos de judía, para excluir los más sensibles, aquellos que acumulan concentraciones más altas de Pro en respuesta a tratamientos de estrés hídrico o salino. Asimismo, se han analizado las respuestas a la salinidad en seis cultivares de judía común: cuatro variedades locales de España y dos líneas experimentales de Cuba. La prolina fue usada para clasificar la tolerancia de los cultivares, Las concentraciones de azúcares solubles totales variaron con los tratamientos y entre los genotipos, pero fue difícil evaluar su papel en la tolerancia al estrés de las plantas analizadas. Los cambios en el contenido de malondialdehído (MDA) no indicaron peroxidación de la membrana inducida por sal como resultado del estrés oxidativo secundario; en consecuencia, no se detectó acumulación de compuestos fenólicos totales y flavonoides, como mecanismo de defensa antioxidante. Estos resultados destacan la confiabilidad del uso de prolina como marcador bioquímico del estrés salino en judía y la importancia del mecanismo relacionado con el transporte de potasio a las hojas para conferir tolerancia al estrés a algunos cultivares de judía. / [CA] Durant segles de cultiu a la Península Ibèrica després de la seva introducció en el segle XVI, les mongetes es van adaptar a nous entorns, evolucionant nombroses varietats locals. Es van avaluar conreessis espanyols locals de garrofó (fesol llima) i la seva resistència a la salinitat, a on es van exposar les plantes a diversos tractaments de sal, per tal d'avaluar l'efecte de la salinitat en el creixement i el rendiment de l'cultiu. Es va observar que l'estrès salí va reduir el pes fresc dels òrgans aeris, el que va permetre classificar els quatre genotips segons la seva tolerància a la salinitat. la prolina augmentar en tots els conreessis, més notablement en el cv. VPH-79, amb les concentracions absolutes més altes registrades en els conreessis més tolerants a la sal. Aquestes troballes indiquen que P. lunatus és moderadament tolerant a la sal i que els seus principals mecanismes per adaptar-se a l'estrès salí són el manteniment d'altes concentracions de K + i l'acumulació de prolina en les fulles. D'altra banda, es van analitzar en hivernacle 24 genotips locals de P. vulgaris d'Espanya durant dues temporades consecutives. De cada genotip, es van conrear cinc plantes i es van caracteritzar (17 trets quantitatius i 15 qualitatius) utilitzant els descriptors de l'IBPGR. Els resultats obtinguts indiquen una alta variabilitat per a la majoria dels trets, especialment els relacionats amb el rendiment i els seus components. A més, es van analitzar les respostes als tractaments per dèficit hídric i estrès salí, pel que fa a inhibició de l'creixement i contingut de prolina foliar (Pro), en 47 genotips de Phaseolus vulgaris de diferents orígens. Per a la majoria de les variables de creixement analitzades i Pro, els efectes de l'cultiu, el tractament i les seves interaccions van ser altament significatius (p <0.001); els trets morfològics de les arrels, el diàmetre de la tija i el nombre de fulls es van deure principalment a una variació incontrolada, mentre que la variació de l'pes fresc i el contingut d'aigua de les tiges i les fulles va ser induïda clarament per l'estrès. Sota les condicions experimentals, els efectes mitjana de l'estrès salí sobre el creixement de les plantes van ser relativament més febles que els de el dèficit hídric. . Pro, per la seva banda, va ser l'única variable que va mostrar una correlació negativa amb tots els paràmetres de creixement, però particularment amb els de tiges i fulles esmentats anteriorment, com ho indiquen els coeficients de correlació de Pearson i els PCA. Es proposa l'ús de Pro com un marcador bioquímic adequat per a exàmens simples, ràpids i a gran escala de genotips de mongeta, per excloure els més sensibles, aquells que acumulen concentracions més altes de Pro en resposta a tractaments d'estrès hídric o salí. Així mateix, s'han analitzat les respostes a la salinitat en sis conreessis de mongeta comú: quatre varietats locals d'Espanya i dues línies experimentals de Cuba. La prolina va ser usada per a classificar la tolerància dels conreessis, Les concentracions de sucres solubles totals van variar amb els tractaments i entre els genotips, però va ser difícil avaluar el seu paper en la tolerància a l'estrès de les plantes analitzades. Els canvis en el contingut de malondialdehid (MDA) no van indicar peroxidació de la membrana induïda per sal com a resultat de l'estrès oxidatiu secundari; en conseqüència, no es va detectar acumulació de compostos fenòlics totals i flavonoides, com a mecanisme de defensa antioxidant. Aquests resultats destaquen la fiabilitat de l'ús de prolina com a marcador bioquímic de l'estrès salí en jueva i la importància de l'mecanisme relacionat amb el transport de potassi a les fulles per conferir tolerància a l'estrès a alguns conreessis de mongeta. / [EN] During centuries of cultivation in the Iberian Peninsula after their introduction in the 16th century, beans adapted to new environments, evolving numerous landraces.In this study was also evaluated the resistance to salinity of several local Spanish cultivars of Phaseolus lunatus L. (lima bean). Plants were subjected to various salt treatments and growth and biochemical parameters were determined. It was observed that salt stress reduced the fresh weight of aerial organs, which allowed us to classify the four genotypes according to their tolerance to salinity. In addition, proline increased in all cultivars, most notably in cv. VPH-79, with the highest absolute concentrations recorded in the most salt tolerant cultivars. These findings indicate that P. lunatus is moderately salt tolerant and that its main mechanisms for adapting to salt stress are the maintenance of high K+ concentrations and proline accumulation in leaves. In studies conducted in this research project, 24 landraces of P. vulgaris from Spain were analyzed in greenhouses during two consecutive seasons. From each genotype, five plants were grown and characterized for 17 quantitative and 15 qualitative traits using IBPGR descriptors. . The results obtained indicate high variability for most of the traits, especially those related to yield and its components. On the other hand, this study analyzed the responses to water deficit and salt stress treatments, in terms of growth inhibition and leaf proline (Pro) content, in 47 Phaseolus vulgaris genotypes of different origins. For most of the growth variables analyzed and Pro, the effects of cultivar, treatment and their interactions were highly significant (p <0.001); root morphological traits, stem diameter and number of leaves were mainly due to uncontrolled variation, whereas variation in fresh weight and water content of stems and leaves was clearly induced by stress. Under our experimental conditions, the average effects of salt stress on plant growth were relatively weaker than those of water deficit. . Pro, in turn, was the only variable that showed a negative correlation with all growth parameters, but particularly with those of stems and leaves mentioned above, as indicated by Pearson's correlation coefficients and PCAs. We propose the use of Pro as a biochemical marker suitable for simple, rapid, large-scale screening of bean genotypes to exclude the most sensitive, those that accumulate higher concentrations of Pro in response to water or salt stress treatments. In addition, responses to salinity were analyzed in six common bean cultivars: four local varieties from Spain and two experimental lines from Cuba. Proline was used to rank the relative tolerance of the cultivars. Concentrations of total soluble sugars varied with treatments and among genotypes, but it was difficult to assess their role in stress tolerance of the plants tested.. Changes in malondialdehyde (MDA) content did not indicate salt-induced membrane peroxidation as a result of secondary oxidative stress; consequently, accumulation of total phenolic compounds and flavonoids, as an antioxidant defense mechanism, was not detected. These results highlight the reliability of the use of proline as a biochemical marker of salt stress in common beans and the importance of the mechanism related to potassium transport to leaves in conferring stress tolerance to some common bean cultivars. / Arteaga Castillo, SM. (2021). Cultivos para el cambio climático: selección y caracterización de variedades de judía (Phaseolusvulgaris L.) y Phaseolus lunatus tolerantes a la sequía y salinidad [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/168450 / TESIS

Philosophiae Doctor - PhD / The role of phenolic acids in mitigating salt stress tolerance have been well documented. However, there are contradicting reports on the effect of exogenously applied phenolic acids on the growth and development of various plants species. A general trend was observed where phenolic acids were shown to inhibit plant growth and development, with the exception of a few documented cases. One of these such cases is presented in this thesis. This study investigates the role of exogenously applied p-coumaric acid (p-CA) on physio-biochemical and molecular responses of chia seedlings under salt stress. This study is divided into three parts. Part one (Chapter 3) focuses on the impact of exogenous p-coumaric acid on the growth and development of chia seedlings. In this section, chia seedlings were supplemented with exogenous p-CA and the various biochemical and plant growth parameters were measured. The results showed that exogenous p-CA enhanced the growth of chia seedlings. An increase in chlorophyll, proline and superoxide oxide contents were also observed in the p-CA treatment relative to the control. We suggested that the increase in chia seedling growth could possibly be via the activation of reactive oxygen species-signalling pathway involving O2− under the control of proline accumulation (Chapter 3). Given the allopathy, nature of p-coumaric acid it is noteworthy that the response observed in this study may be species dependent, as contrasting responses have been reported in other plant species. Part two (Chapter 4) of this study investigates the influence of piperonylic acid (an inhibitor of endogenous p-coumaric acid) on the growth and development of chia seedlings. In trying to illustrate whether p-CA does play a regulatory role in enhancing pseudocereal plant growth, we treated chia seedlings with the irreversible inhibitor of C4H enzyme, to inhibit the biosynthesis of endogenous p-CA. In this section, chia seedlings were treated with piperonylic acid and changes in plant growth, ROS-induced oxidative damage, p-CA content and antioxidant capacity was monitored. Inhibition of endogenous p-CA restricted chia seedling growth by enhancing ROS-induced oxidative damage as seen for increased levels of superoxide, hydrogen peroxide and the extent of lipid peroxidation. Although an increase in antioxidant activity was observed in response to piperonylic acid, this increase was not sufficient to scavenge the ROS molecules to prevent oxidative damage and ultimate cellular death manifested as reduced plant growth. The results presented in this section support our hypothesis that p-CA play an important regulatory role in enhancing chia seedling growth and development as shown in Chapter 3. Part three (Chapter 5) seeks to identify and functionally characterise p-coumaric acid induced putative protein biomarkers under salt stress conditions in chia seedlings. Previous studies have shown that p-CA reversing the negative effect caused by NaCl-induced salt stress. While these studies were able to demonstrate the involvement of p-CA in promoting plant growth under salt stress conditions, they focussed primarily on the physiological aspect, which lacks in-depth biochemical and molecular analysis (ionomic and proteomic data) which could help in detecting the genes/proteins involved in salt stress tolerance mechanisms. A comparative ionomics and proteomic study was conducted, with the aim of elucidating the pivotal roles of essential macro elements and/or key protein markers involved in p-CA induced salt stress tolerance in chia seedlings. With the exception of Na, all the other macro elements were decreased in the salt treatment. Contrary to what was observed for the salt treatment most of the macro elements were increased in the p-CA treatment. However, the addition of exogenous p-CA to salt stressed seedlings showed an increase in essential macro elements such as Mg and Ca which have been shown to play a key role in plant growth and development. In the proteomic analysis we identified 907 proteins associated with shoots across all treatments. Interestingly, only eight proteins were conserved amongst all treatments. A total of 79 proteins were unique to the p-CA, 26 to the combination treatment (NaCl + p-CA) and only two proteins were unique to the salt stress treatment. The unique proteins identified in each of the treatments were functionally characterised to various subcellular compartments and biological processes. Most of the positively identified proteins were localised to the chloroplast and plays key roles in photosynthesis, transportation, stress responses and signal transduction pathways. Moreover, the protein biomarkers identified in this study (especially in the p-CA treatment) are putative candidates for genetic improvement of salt stress tolerance in plants.

Proline-rich antimicrobial peptides (PrAMPs) are promising candidates to treat bacterial infections. The designer peptide ARV-1502 exhibits strong antimicrobial effects against Enterobacteriaceae both in vitro and in vivo. Since the inhibitory effects of ARV-1502 reported for the 70 kDa heat-shock protein DnaK do not fully explain the antimicrobial activity of its 176 substituted analogs, we further studied their effect on the bacterial 70S ribosome of Escherichia coli, a known target of PrAMPs. ARV-1502 analogues, substituted in positions 3, 4, and 8 to 12 (underlined) of the binding motif D3KPRPYLPRP12 with aspartic acid, lysine, serine, phenylalanine or leucine, were tested in a competitive fluorescence polarization (FP) binding screening assay using 5(6)-carboxyfluoresceinlabeled (Cf-) ARV-1502 and the 70S ribosome isolated from E. coli BW25113. While their effect on ribosomal protein expression was studied for green fluorescent protein (GFP) in a cell-free expression system (in vitro translation), the importance of known PrAMP transporters SbmA and MdtM was investigated using E. coli BW25113 and the corresponding knockout mutants. The dissociation constant (Kd) of 201 16 nmol/L obtained for Cf-ARV-1502 suggests strong binding to the E. coli 70S ribosome. An inhibitory binding assay indicated that the binding site overlaps with those of other PrAMPs including Onc112 and pyrrhocoricin as well as the non-peptidic antibiotics erythromycin and chloramphenicol. All these drugs and drug candidates bind to the exit-tunnel of the 70S ribosome. Substitutions of the C-terminal fragment of the binding motif YLPRP reduced binding. At the same time, inhibition of GFP expression increased with net peptide charge. Interestingly, the MIC values of wild-type and DsbmA and DmdtM knockout mutants indicated that substitutions in the ribosomal binding motif altered also the bacterial uptake, which was generally improved by incorporation of hydrophobic residues. In conclusion, most substituted ARV-1502 analogs bound weaker to the 70S ribosome than ARV-1502 underlining the importance of the YLPRP binding motif. The weaker ribosomal binding correlated well with decreased antimicrobial activity in vitro. Substituted ARV-1502 analogs with a higher level of hydrophobicity or positive net charge improved the ribosome binding, inhibition of translation, and bacterial uptake.

The antimicrobial peptide (AMP) ARV-1502 was designed based on naturally occurring short proline-rich AMPs, including pyrrhocoricin and drosocin. Identification of chaperone DnaK as a therapeutic target in Escherichia coli triggered intense research on the ligand- DnaK-interactions using fluorescence polarization and X-ray crystallography to reveal the binding motif and characterize the influence of the chaperone on protein refolding activity, especially in stress situations. In continuation of this research, 182 analogs of ARV-1502 were designed by substituting residues involved in antimicrobial activity against Gramnegative pathogens. The peptides synthesized on solid-phase were examined for their binding to E. coli and S. aureus DnaK providing 15 analogs with improved binding characteristics for at least one DnaK. These 15 analogs were distinguished from the original sequence by their increased hydrophobicity parameters. Additionally, the influence of the entire DnaK chaperone system, including co-chaperones DnaJ and GrpE on refolding and ATPase activity, was investigated. The increasingly hydrophobic peptides showed a stronger inhibitory effect on the refolding activity of E. coli chaperones, reducing protein refolding by up to 64%. However, these more hydrophobic peptides had only a minor effect on the ATPase activity. The most dramatic changes on the ATPase activity involved peptides with aspartate substitutions. Interestingly, these peptides resulted in a 59% reduction of the ATPase activity in the E. coli chaperone system whereas they stimulated the ATPase activity in the S. aureus system up to 220%. Of particular note is the improvement of the antimicrobial activity against S. aureus from originally >128 μg/mL to as low as 16 μg/mL. Only a single analog exhibited improved activity over the original value of 8 μg/mL against E. coli. Overall, the various moderate-throughput screenings established here allowed identifying (un)favored substitutions on 1) DnaK binding, 2) the ATPase activity of DnaK, 3) the refolding activity of DnaK alone or together with co-chaperones, and 4) the antimicrobial activity against both E. coli and S. aureus.

No description available.