Salicylic Acid (SA) is an important plant hormone which acts as a therapeutic agent in the plant in response to biotic and abiotic stress. It plays a significant role in growth and development. SABP2, a methyl salicylate esterase is a key player in SA mediated defense signaling. It catalyzes the conversion of mobile methyl salicylate to salicylic acid. During infection, accumulation of salicylic acid in the distal organ in response to the primary infection elsewhere primes the plant to defend against subsequent infection by the mechanism known as Systemic Acquired Resistance (SAR). SIP68, one of the interacting proteins of SABP2 is a glucosyltransferase protein. Glucosyltransferase protein catalyzes the formation of the glycosidic bond by transferring glucose molecule from donor to acceptor molecules. Plant glucosyltransferase is widely distributed in nature playing the dual role of activating and inactivating enzymes. They are also associated with changing the protein stability and solubility of compounds. Since SABP2 has a role in SA mediated defense signaling and glucosyltransferase proteins are associated with physiological function thus, there is a possibility of SIP68 associated with the major or supportive role in either or both functions. The purified recombinant SIP68 protein was tested for glucosyltransferase activity using radioactive method. The purified SIP68 glucosylates various artificially available flavonoid compounds with highest activity detected with Kaempferol (flavonol) followed by quercetin but negligible activity with SA. HPLC based glucosyltransferase assay further verified SIP68 as a flavonoid UDP-glucosyltransferase, not SA glucosyltransferase. Our interest is to further characterize SIP68 and assess its role in plant defense mechanism. Knowing its expression pattern inside plant cell will help us to assess its activity pattern inside the cell. For this enhanced Green Fluorescent Protein (eGFP) tagged SIP68 was transiently expressed inside the plant cell. Confocal microscopy imaging suggests SIP68 likely to be localized in the cytoplasm which will be further confirmed by subcellular fractionation. To assess the role of SIP68 in plant defense mechanism transgenic line expressing altered SIP68 gene was generated using CRISPR Cas9 technique. Verified transgenic line challenged under different biotic and abiotic stress will help us to understand the role of SIP68 in plant defense mechanism. Our research will help us to understand defense mechanism in tobacco model system enabling us to use the knowledge to develop the resistant varieties of crops that are capable of withstanding the adverse condition of pathogenic as well environmental challenges.

Glucosyltransferases catalyze the transfer of glucose molecules from an active donor to acceptor molecules and are involved in many plant processes. SIP68, a tobacco glucosyltransferase protein, is a SABP2-interacting protein. It was identified in a yeast two-hybrid screen using SABP2 as bait and tobacco proteins as prey. SABP2, converts methyl salicylate to salicylic acid (SA) as a part of the signal transduction pathways in SA-mediated defense signaling. Subcellular localization is a crucial aspect of protein functional analysis to assess its biological function. The recombinant SIP68 tagged with eGFP was expressed transiently in Nicotiana benthamiana and observed under confocal microscopy. Fluorescent signals were observed in the epidermal cells. Subcellular fractionation of the tobacco leaves transiently expressing SIP68-+eGFP confirmed that SIP68 is localized in the cytosol. To study the role of SIP68 in plant stress signaling, transgenic lines with altered SIP68 expression were generated using RNAi and CRISPR Cas9 and analyzed.

Molecular cell biology has been an intensively studied interdisciplinary field with the rapid development of experimental techniques and fast upgrade of computational hardware and numerical tools. Recent technological developments have led to single-cell experiments which allow us to probe the role of stochasticity in cellular processes. Stochastic modeling of the corresponding processes is thus an essential ingredient for the understanding and interpretation of cellular systems of interest. In this thesis, we explore several nucleation-based stochastic cellular processes, i.e. Min protein oscillation in Escherichia coli, pausing phenomena in DNA transcription, and single-molecule enzyme kinetics. We focus on the key experimental results and build up stochastic models accordingly to provide quantitative insights to the underlying physical mechanisms for the corresponding biological processes. We utilize specific mathematical methods and computational algorithms to gain a better understanding and make predictions for further experimental explorations in the relevant fields. / Ph. D.

Conversion of aspartate and asparagine residues to isoaspartate is a prevalent covalent protein modification in cells. The accumulation of these altered residues can lead to the loss of protein function and the consequent loss of cellular function. The L-ISOASPARTATE METHYLTRANSFERASE (EC 2.1.1.77) (PIMT) iteratively methylates abnormal isoaspartyl residues leading to conversion to L-aspartate, thereby mitigating the injurious effects of aging. Arabidopsis thaliana is unique among eukaryotes studied to date in that it possesses two genes (At3g48330 (PIMT1) and At5g50240 (PIMT2)) encoding PIMT. The PIMT2 gene exhibits a complex transcriptional control involving different transcriptional initiation sites and 5'- and 3'- alternative splice site selection in the first intron. Varying the transcriptional initiation site results in alternative targeting of the PIMT2 proteins thus produced to: 1) the nucleus, or 2) the cytoplasm, while PIMT1 is cytosolic. Inclusion of a 51 nucleotide 5 alternatively spliced sequence with or without a nine nucleotide 3 alternatively spliced sequence dramatically alteres the subcellular protein localization from the cytoplasm and around the chloroplast to inside the chloroplast. All recombinant PIMT2 isoform tested exhibit PIMT activity, although solubility varied among them. Multiplex RT-PCR was used to establish PIMT1 and PIMT2 transcript presence and abundance, relative to -TUBULIN, in various tissues and under a variety of stresses imposed on seeds and seedlings. PIMT1 transcript is constitutively present but can increase, along with PIMT2, in developing seeds presumably in response to increasing endogenous ABA. Transcript from PIMT2 also increases in establishing seedlings due to exogenous ABA application or applied stress presumably through an ABA-dependent pathway. Furthermore, Cleaved Amplified Polymorphic Sequence analysis of the PIMT2 amplicons has shown that the ratio among the splicing variants alters upon ABA application, implicating a role for the spliceosome or differential RNA stability in orchestrating the plant's response to stress. T-DNA insertional mutants of both genes were isolated but no obvious phenotype has been identified. The double mutant has been generated and will be evaluated.

No description available.

N-acylation of phosphatidylethanolamine (PE) with free fatty acids catalyzed by N-acyl phosphatidylethanolamine (NAPE) synthase was reported in cotyledons of 24-h-old cotton seedlings. Here I report subcellular localization of this enzyme. Differential centrifugation, sucrose density gradient fractionation,aqueous two-phase partitioning and electron microscopy techniques were utilized to elucidate subcellular site(s) of NAPE synthase. Marker enzymes were used to locate organelles in subcellular fractions. Differential centrifugation indicated that NAPE synthase is present in more than one organelle and it is a membrane bound enzyme. Sucrose density gradient fractionations indicated that NAPE synthase is present in membranes derived from endoplasmic reticulum (ER),Golgi and possibly plasma membrane (PM) but not mitochondria, glyoxysomes or plastids. Aqueous two-phase partitioning experiments with cotton and spinach tissues supported these results but Goigi appeared to be the major site of NAPE synthesis. Electron microscopy of subcellular fractions was used to examine isolated fractions to provide visual confirmation of our biochemical results. Collectively, these results indicate that NAPE is synthesized in plant ER, Golgi and possibly PM.

Maspina é uma proteína supressora de tumor e metástase e sua localização subcelular está relacionada ao prognóstico do câncer de mama. Nosso grupo mostrou em MCF-10A que quando fosforilada maspina se acumula no citoplasma. Porém, esta correlação ainda não foi relatada in vivo. Aqui investigamos a expressão, fosforilação e localização subcelular de maspina ao longo do desenvolvimento da glândula mamária murina. Maspina foi detectada no estágio mais tardio da gestação, na lactação e na involução. Os níveis de fosforilação de maspina são maiores no período de lactação do que na involução. Interessantemente, a porcentagem de células que apresenta maspina no núcleo é maior na fase de involução do que na fase de lactação Estes dados mostram que a correlação entre níveis de fosforilação de maspina e localização subcelular também é observada in vivo e que esses processos são reguladas ao longo do desenvolvimento na glândula mamária murina. / Maspin is a protein with tumor and metastasis suppressing activity and its subcellular localization is related to breast cancer prognosis. Using MCF-10A cells as a model system, our group demonstrated a correlation between maspin phosphorylation and cytoplasmic accumulation. Here we investigated maspin expression, phosphorylation levels and subcellular localization in vivo during the murine mammary gland development. Maspin was detected in late pregnancy, during lactation and involution. Maspin phosphorylation levels is higher during lactation than during involution. Interestingly, the percentage of cells which present nuclear maspin is higher in the involution than in lactation. These data show that the correlation between maspin phosphorylation and subcellular localization is also observed in vivo and these processes are regulated during murine mammary gland development.

Maspina, uma proteína supressora de tumor de 42 kDa, pertence à superfamília das serpinas (inibidores de serina protease), no entanto, seu mecanismo de ação independe da inibição de proteases. Maspina é expressa por epitélio de diferentes órgãos e apresenta regulação diferencial durante a progressão tumoral. Entre suas atividades biológicas, foram descritas a regulação da adesão celular, migração, morte, expressão gênica e resposta ao estresse oxidativo. A localização subcelular de maspina está relacionada a regulação de suas funções biológicas. Estudos clínicos recentes indicam que é a localização nuclear de maspina, ao invés de seus níveis de expressão, correlaciona-se com bons fatores prognósticos e sobrevida global em alguns tipos de câncer, incluindo câncer de mama. No entanto, pouco se sabe sobre como a localização subcelular de maspina é regulada. A maioria dos estudos sobre maspina é conduzido em linhagens de células tumorais, que apresentam uma grande variabilidade no contexto celular. Portanto, é importante usar uma linhagem celular não transformada para esta abordagem. Nesse trabalho investigamos fatores solúveis, interação célula-célula e interação célula-substrato como possíveis reguladores da localização de maspina na célula e as vias de sinalização envolvidas nesta regulação. Usando a linhagem celular epitelial mamária não transformada MCF10A como modelo, observamos por experimentos de imunofluorescência que o Fator de Crescimento Epidermal (EGF) promove a localização nuclear de maspina. EGF também altera a fosforilação da proteína conforme mostram nossos experimentos de 2D-SDS-PAGE e gel contendo Phostag. A fosforilação ocorre em resíduos de serina e a desfosforilação em resíduos de tirosina. À procura por vias de sinalização a jusante de do receptor de EGF envolvidas na regulação da localização subcelular de maspina, identificamos as vias de PI3K e Stat3 . Além disso, a adesão célula-célula parece bloquear a localização nuclear de maspina. Na tentativa de investigar funções celulares relacionadas à regulação de maspina por EGFR, identificamos proteínas que co-imunoprecipitam com maspina após o tratamento com EGF. O agrupamento funcional dessas proteínas sugere que a maspina pode estar envolvida em metabolismo de RNA, adesão celular e citoesqueleto. Desta forma, este trabalho identificou diferentes mecanismos que regulam a localização subcelular de maspina, que dependem da ativação das vias de PI3K e AKT pela via de EGFR. / Maspin, a 42 kDa tumor suppressor protein, belongs to the serpin (serine protease inhibitors) superfamily, however, its mechanism of action does not depend on protease inhibition. Maspin is expressed by epithelium of different organs and presents differential regulation during tumor progression. Among its biological activities, regulation of cell adhesion, migration, death, gene expression and oxidative stress response were described. Subcellular localization of maspin is related to the regulation of its biological functions. Recent clinical studies indicate that nuclear localization of maspin, not its expression levels, correlates with good prognostic factors and overall survival in some types of cancer, including breast cancer. However, little is known about how maspin subcellular localization is regulated. Most studies on maspin are conducted in tumor cell lines, which show great variability in cell context. Therefore, it is important to use a nontransformed cell line for this approach. Here we investigated soluble factors, cell-cell interaction and cell-substrate interaction as possible regulators of maspin subcellular localization and the signaling pathways involved. Using the MCF10A untransformed mammary epithelial cell line as a model system, we observed by immunofluorescence experiments that the Epidermal Growth Factor (EGF) promotes nuclear localization of maspin. EGF also alters the phosphorylation of the protein as observed by 2D-SDSPAGE and gel containing Phos-tag. Phosphorylation occurs on serine residues and dephosphorylation, on tyrosine residues. Looking for signaling pathways downstream of EGF receptor involved in regulation of maspin subcelular localization, we identified the PI3K and STAT3 pathways. On the other hand, cell-cell adhesion seems to block nuclear localization of maspin. In an attempt to investigate cellular functions related to regulation of maspin by EGFR, we identified proteins that co-immunoprecipitate with maspin in EGF-treated cells. The functional grouping of these proteins suggests that maspin may be involved with RNA metabolism, cell adhesion and cytoskeleton. Thus, this study identified different mechanisms that regulate subcellular localization of maspin, which depends on PI3K and STAT3 activation downstream of EGFR pathway.

Orientador: Henrique Ferreira / Banca: Marco Aurélio Takita / Banca: Fernando Carlos Pagnocca / Resumo: O cancro cítrico é uma doença causada pela bactéria Xanthomonas axonopodis pv. citri (Xac), e que afeta plantas de citros por todo o mundo. O genoma de Xac foi completamente seqüenciado, o que revelou grandes quantidades de ORFs (~30%) codificando para produtos com função desconhecida (proteínas hipotéticas). Baseando-se no princípio de que muitos eventos bioquímicos acontecem em sítios específicos no interior celular, a localização de proteínas em fusão com GFP tem sido amplamente utilizada para a obtenção de informações valiosas a respeito de suas funções. Para iniciarmos estudos de localização de proteínas hipotéticas em Xac, construímos um vetor integrativo capaz de expressá-las em fusão com o polipeptídio GFP, pPM2a. O vetor de expressão para Xac carrega um cassete promotor/repressor de xilose (xylR/pxyl), o gene gfp, um RBS sintético e um fragmento do gene de α-amilase de Xac, para direcionar a integração do sistema de expressão no lócus amy do cromossomo bacteriano. Mostramos aqui a integração estável do vetor no lócus amy de Xac. Além disso, mutantes de Xac expressando o polipeptídio GFP não apresentam nenhuma alteração em seu fenótipo de patogenicidade para o hospedeiro (laranja doce). Mutantes de Xac expressando versões marcadas com GFP para as proteínas ParB e ZapA, ambas codificadas por Xac, foram utilizadas para a padronização dos estudos de localização subcelular. GFP-ZapAXac apresentou um padrão de localização análogo ao de seu ortólogo presente em Bacillus subtilis: uma estrutura semelhante a uma barra, posicionada no meio do bacilo, onde o septo se desenvolve, orientado perpendicularmente com relação ao eixo longitudinal da célula. Este é o primeiro relato de um estudo de localização realizado em Xac. Ao contrário de GFP-ZapAXac, ParBXac-GFP não mostrou nenhum padrão de localização, apesar de a fusão... (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: Citrus canker is a disease caused by the bacterium Xanthomonas axonopodis pv. citri (Xac), which affects citrus plants worldwide. The genome of Xac was completely sequenced, which unveiled an expressive amount of ORFs (~30%) coding for products of unknown function (hypothetical proteins). Based on the principle that many biochemical events happen at specific sites within the cells, protein localization studies have been extensively used to gather valuable information about function. In order to start subcellular localization studies of hypothetical proteins encoded by Xac using fluorescent microscopy, we constructed an integrative expression vector for GFP-tagging of proteins in this bacterium, pPM2a. The expression vector for Xac carries a xylose repressor/promoter cassette (xylR/pxyl), the gfp gene, a synthetic Ribosome Binding Site (RBS), and a fragment of the α-amylase gene of Xac, to drive the integration of the whole expression system into the amy locus of the bacterial chromosome. We show here stable integration of the expression vector into the amy locus of Xac. Furthermore, Xac mutants expressing the polypeptide GFP do not exhibit any alteration in pathogenicity to the host plant sweet orange. Mutants of Xac expressing GFPtagged versions of ParB and ZapA proteins, both encoded by Xac, were used to standardize the subcellular localization studies. GFP-ZapAXac showed a localization pattern analogous to its ortholog encoded by Bacillus subtilis: a bar-like structure positioned in the middle of the rods, where the septum develops, oriented perpendicularly to the longitudinal axis of the cell. This is the first report of a protein localization study performed in Xac Unlike GFP-ZapAXac, ParBXac-GFP did not display any detectable localization pattern, despite the fact that we were able to detect the production of the fusion ParBXac-GFP in Western blot experiments... (Complete abstract click electronic access below) / Mestre

Maspina (mammary serpin) foi identificada em 1994 como uma serpina (serine protease inhibitor) que apresenta atividade de supressão tumoral. Foi classificada como uma serpina devido à homologia na sequência de aminoácidos, porém, maspina não apresenta atividade de inibição de serina proteases. Entre os efeitos biológicos de maspina estão a modulação da adesão, a inibição do crescimento e a invasão tumoral, a inibição da angiogênese, o efeito pró-apoptótico e o controle da resposta ao stress oxidativo, propriedades que contribuem para supressão tumoral. Esta diversidade de funções se reflete nos inúmeros ligantes de maspina e na sua localização subcelular, já que é encontrada na membrana plasmática, no citoplasma, núcleo e mitocôndrias. A localização subcelular de maspina guarda importante relação com sua função, já que foi demonstrado que sua localização nuclear está correlacionada com bom prognóstico em diversos tumores e seu efeito supressor de tumor foi observado somente quando maspina está localizada no núcleo. Entre os ligantes de maspina estão a HDAC1, IRF6, GST, HSP90 e HSP70, β1 integrina, uPAR e colágeno tipo I e III. O mecanismo molecular envolvido na regulação dessas atividades não foi elucidado, e até o momento, somente um gene e uma proteína de maspina foram descritos, desta forma alterações pós-traducionais devem estar envolvidas na regulação dessas atividades. Com objetivo de verificar se há modificações pós-traducionais em maspina, utilizamos células MCF10A, que expressam grande quantidade dessa proteína, e submetemos seu extrato proteico à separação por gel bidimensional seguido de western blot. Identificamos quatro formas de maspina com a mesma massa molecular (42kDa), mas pontos isoelétricos distintos. Três destas formas são sensíveis ao tratamento com fosfatase ácida, o que sugere que estas sejam fosforiladas. Utilizamos ainda peroxidovanadato de sódio, um potente inibidor de tirosina fosfatase para investigar o papel da fosforilação de maspina em resíduos de tirosina. Através de western blot e imunofluorescência, observamos que o tratamento das células com o inibidor resultou no aumento dos níveis celulares de maspina assim como no seu acúmulo no citoplasma. Deste modo, concluímos que existem três diferentes fosfoformas de maspina em células MCF10A e ainda a inibição de tirosinas fosfatases aumentam os níveis de maspina e resultam no acúmulo da proteína no citoplasma. Esses resultados sugerem que a fosforilação pode estar envolvida na localização subcelular de maspina e na regulação dos seus níveis proteicos na célula. / Maspin (mammary serpin) was identified in 1994 as a serpin (serine protease inhibitor) which presents tumor suppressor activity. It was classified as a serpin due to its homology in amino acids sequence; however, maspin doesn\'t exhibit serine protease inhibition activity. Among maspin biological effects are modulation of cell adhesion, inhibition of tumor growth, invasion and angiogenesis, a pro-apoptotic effect and control of oxidative stress response, properties which contribute to tumor suppression. This functional diversity reflects maspin numerous ligands and its subcellular localization, since it is found on the plasma membrane, in the cytoplasm, nucleus and in mitochondria. Maspin subcellular localization is closely related to its function, as its nuclear localization correlates with good prognostic in several tumors and maspin tumor suppressor activity is only observed when it is located in the nucleus. Among maspin ligands are histone H1 deacetylase, IRF6, GST, HSP90 e HSP70, β1 integrin, uPAR and type I and III collagen. The molecular mechanisms involved in the regulation of maspin biological activities are poorly understood. So far, only one gene and one protein have been assigned to maspin, so posttranslational modification should be involved. In order to verify posttranslational modification in maspin, we utilized MCF10A cells, which express great amount of this protein, and we submitted its proteic extract to 2D-SDS-PAGE followed by western blot. We identified four maspin forms with the same molecular mass (42kDa), but different isoelectric point. Three of these forms are sensitive to acidic phosphatase treatment, suggesting that they are phosphorylated maspin forms. We also utilized sodium peroxovanadate, a potent tyrosine phosphatase inhibitor to investigate the role of maspin tyrosine phosphorylation. Through western blot and immunofluorescence analyses, we observed that cell treatment resulted in increase in maspin cellular levels as well as its cytoplasmic accumulation. Thus, we concluded that there are three diferente maspin phosphoforms in MCF10A cells and yet tyrosine phosphatase inhibition increases maspin levels and results in accumulation of the protein in the cytoplasm. These data suggest that phosphorylation may be involved in maspin subcellular localization and regulation of its protein levels in the cell.