Polyheterocycles such as polythiophene and its derivatives comprise an important class of conducting polymers used for electronic applications. They have been of great interest for use in electronic materials due to their increased environmental stability as well as novel electronic properties in their polymer states. We have been interested in exploring the electronic properties of organometallic analogues of the low-band-gap polymer poly(benzo[3,4-c]thiophene) (polyisothianaphthene) that incorporates η5-cyclopenta[c]thienyl monomers such as ferroceno[c]thiophene. First chapter of this dissertation involved synthetic attempts to ferroceno[c]thiophene. Exploring a shorter synthetic route to starting material, 1,2-di(hydroxymethyl)ferrocene was the first task. This was followed by attempts to synthesize an important precursor, 1,3-dihydroferroceno[c]thiophene to our target molecule, ferroceno[c]thiophene. In order to achieve our target precursor molecule, 1,3-dihydroferroceno[c]thiophene, we reacted 1,2-di(hydroxymethyl)ferrocene with H2S/H2SO4 and Na2S/HBF4 respectively. Reaction of 1,2-di(hydroxymethyl)ferrocene with either H2S/H2SO4 or Na2S/HBF4 results in 2,16-dithia[3.3](1,2)ferrocenophane instead of monomeric 1,3-dihydroferroceno[c]thiophene. Dehydration of 1,2-di(hydroxymethyl)ferrocene with dilute H2SO4 resulted in 2,16-dioxa[3.3](1,2)ferrocenophane. Formation of the five-membered tetrahydrothiophene or tetrahydrofuran rings is probably disfavored compared to formation of the ten-membered ferrocenophane rings because of greater strain in the five-membered rings. Thus, in order to achieve our target molecule ferroceno[c]thiophene, we took an alternate route. We decided to pursue the route with 1,4-dihydro-2,3-ferrocenodithiin being the precursor to our final target molecule. This was successfully accomplished. 1,2-Di(hydroxymethyl)ferrocene reacts with thiourea in the presence of catalytic trifluoroacetic acid to give a water-soluble thiouronium salt, which reacts with aqueous potassium hydroxide in air to give 1,4-dihydro-2,3-ferrocenodithiin, via oxidation of the intermediate 1,2 di(mercaptomethyl)ferrocene. 1,4-dihydro-2,3-ferrocenodithiin, an important precursor to our desired heterocyclic chemistry was synthesized. The increased emission of CO2, a greenhouse gas, to the atmosphere is a matter of serious worldwide concern. Every year a few gigatons of CO2 are added to the atmosphere by various anthropogenic activities like burning of fuel for electricity, running industry and transportation. Thus, developing ways to reduce the emission of CO2 to the atmosphere is of major importance. Although the amine-based absorption method is considered the most reliable, it is an expensive alternative. The catalyzed enhancement of CO2 absorption is a critical component to reduce the capital cost of CO2 capture. Specifically, an effective catalyst will increase the CO2 hydration rate, thereby decreasing the size of the absorber tower needed. In biological systems, CO2 hydration is catalyzed by the enzyme carbonic anhydrase, which contains ZnII in its active site. Carbonic anhydrase typically is not stable enough to be used in an industrial process, therefore, there is a need to synthesize robust, inexpensive CO2 hydration catalysts. Majority work of this dissertation focuses on designing catalysts that show high CO2 hydration rate similar to carbonic anhydrase while showing superiority towards temperature, pH and inhibitors. We focused our efforts on complexes of Zn, Cu and Co with ligands such as 1,4,7,10-tetraazacyclododecane (cyclen), 5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane (teta and tetb), tris(benzimidazolylmethyl)amine (BIMA) and anionic tris(pyrazolylborate)s that mimic the enzyme, carbonic anhydrase. Several of these complexes have been reported for their interesting CO2 capture properties but they contain hazardous perchlorate ion. We desired to replace them with benign, non-coordinating counterions like PF6-, BF4-, Cl-, CH3COO-, NO3-, CF3SO3-, SiF62- that avoid the potentially explosive perchlorate salts. In order to test the activity of synthesized catalysts under industrial capture conditions, we designed a quick experimental screening pH drop method. [[Zn(cyclen)(H2O)][SiF6]•2H2O as well as a number of other catalysts have been synthesized and tested for their post-combustion CO2 capture enhancement capabilities in aqueous solvent mixtures under both pH-drop screening and stopped-flow conditions. [Zn(cyclen)(H2O)][SiF6]•2H2O, which has an unreactive counteranion, is found to catalyze CO2 hydration in aqueous solvent mixtures under both pH-drop screening and stopped-flow conditions. However, under pH-drop which has conditions similar to industrial post combustion capture, activity of Zn(cyclen)(H2O)][SiF6]•2H2O drops as compared to observed in stopped-flow conditions probably because of bicarbonate coordination to Zn active site in these systems. The Zn center is highly electron deficient and therefore easily coordinates anions, inhibiting the ability to reform hydroxyl species on the metal. Thus, we decided to test the catalysis of benchmark enzyme carbonic anhydrase under similar conditions to determine the threshold value. Carbonic anhydrases catalyze the hydration of carbondioxide at ambient temperatures and physiological pH with the highest known rate constant= 106 M–1 s–1, but in our system (CAER pH drop screening) came out to be 438797 M–1 s–1. The lower catalytic rate constant for carbonic anhydrase in 0.1000 M K2CO3, similar to Zn-cyclen, strengthens the conjecture that at high bicarbonate concentrations, HCO3– binding to the Zn(II) active site slows catalysis by inhibiting bicarbonate displacement with water to regenerate the active species. The complexes containing anionic ligands that donate electron density into the metal center may serve to remove anionic bicarbonates/carbamates from the secondary coordination sphere and away from the metal center, thereby facilitating bicarbonate/anion dissociation and increasing CO2 hydration rates. We studied catalysis of trispyrazolylborate molecule in 30% MEA and found the molecule to be catalytically active. We also developed an NMR-based method to see if the coordination of solvents to CO2 capture solvents can be studied.

Interactions between light and a molecule can result in reversible or irreversible changes in properties of both the light and the molecule. Of the many known interactions, nonlinear absorption is a process in which an intense light signal, for instance from a laser, can be moderated. This can be manifested either in a marked lowering of the light’s intensity or in reductions in fluctuations of its intensity. Such an effect is often termed ‘optical power limiting’ (OPL). High power lasers can be very dangerous since their high intensity can damage or destroy eyes and optical sensors. However, there are currently no adequate protective measures against lasers that cover the entire visible region and there is an increasing demand for new or improved OPL materials. Some of the most promising optical power limiting materials are substances that combine nonlinear optical properties with high transparency in normal light, but after activation by a laser beam, their light transmittance falls extremely rapidly via so-called self-activating mechanisms. The platinum(II) acetylides comprise one class of compounds with such properties. In this study, various OPL Pt(II) acetylides were synthesized and their nonlinear optical properties were characterized. The emphasis of the work was on preparation of the compounds, but in order to design organoplatinum chromophores for OPL, attempts were also made to obtain insight into the mechanisms of nonlinear absorption. The work was divided into two main parts. In the first the goal was to find compounds that are good optical limiters in solution. The possibility of isolating the chromophore site by dendron shielding and the effects of incorporating a thiophene ring into the organic molecular system were also explored. In addition, a new route for synthesizing these compounds was developed. The second part was focused on incorporating the most interesting compounds into solid materials. The preparation and characterization of Pt(II) acetylides with molecular groups for covalent attachment to a silica matrix via the solution gel approach is described.

Different substituted thiophene and pyrrole monomers namely hexamethylene (bis-3-thiopheneacetamide) (HMTA), N-(4-(3-thienylmethylene)-oxycarbonylphenyl)maleimide (MBThi), 2,4,6-Tris-(4-pyrrol-1-yl-phenoxy)-[1,3,5]triazine (TriaPy), 2,4,6-Tris-(thiophen-3-ylmethoxy)-[1,3,5] triazine (TriaTh), and N-(2-(thiophen-3-yl)methylcarbonyloxyethyl) maleimide (NMT) were synthesized. The chemical structures of the monomers were characterized by Nuclear Magnetic Resonance (1H-NMR and 13C-NMR) and Fourier Transform Infrared (FTIR) Spectroscopies. Electrochemical behavior of the monomers in the presence and absence of comonomers were studied by cyclic voltammetry. Subsequently, monomers were homopolymerized and copolymerized via electrochemical methods and the resultant polymers were characterized by FTIR, Scanning Electron Microscopy (SEM) and conductivity measurements. Second part of the study was devoted to investigate one of most interesting property of conducting polymers, the ability to switch reversibly between the two states of different optical properties, &ldquo / electrochromism&rdquo / . In recent years there has been a growing interest in application of conducting polymers in electrochromic devices. Thus, electrochromic properties of the synthesized conducting polymers were investigated by several methods like spectroelectrochemistry, kinetic and colorimetry studies. Spectroelectrochemistry experiments were performed in order to investigate key properties of conjugated polymers such as band gap, maximum absorption wavelength, the intergap states that appear upon doping and evolution of polaron and bipolaron bands. Switching time and optical contrast of the homopolymers and copolymers were evaluated via kinetic studies. Results implied the possible use of these materials in electrochromic devices due to their good electrochromic properties.

Organische Solarzellen besitzen das Potential für leichte und zugleich flexible photovoltaische Anwendungen, die kostengünstig hergestellt werden können und damit einen Beitrag zur Verminderung der Emission von Kohlendioxid, Methan und Stickoxiden leisten können. Zur Herstellung von organischen Solarzellen werden nur geringe Mengen der organischen Materialien benötigt und die Prozessierung findet bei vergleichsweise geringen Temperaturen statt, was die Abscheidung auf z. B. Plastikfolie ermöglicht. Man unterscheidet drei Arten von organischen Solarzellen. Erstens, Solarzellen bestehend aus kleinen Molekülen, die im Vakuum durch Sublimation auf das Substrat abgeschieden werden. Zweitens, Polymersolarzellen, deren Schichten aus Lösung meist durch „spin-coating“ oder Druckverfahren präpariert werden. Und drittens, „dye-sensitized“ Solarzellen (auch Grätzel-Zellen), die aus einer porösen Schicht Titandioxid und einem flüssigen Elektrolyten für den Ladungsträgertransport bestehen. Diese Arbeit beschäftigt sich ausschließlich mit organischen Solarzellen aus kleinen Molekülen. Die höchsten erreichten Wirkungsgrade organischer Solarzellen aus kleinen Molekülen liegen derzeit bei etwa 5 % . Um die Effizienzen von Solarzellen aus kleinen Molekülen zu steigern, ist es einerseits notwendig das Verständnis der physikalischen und chemischen Prozesse innerhalb der Bauelemente genauer beschreiben zu können, andererseits werden neue Materialien mit optimierten Eigenschaften für die organische Photovoltaik benötigt. In dieser Arbeit wurden zwei Strategien zur Optimierung organischer Solarzellen verfolgt: • Durch die Optimierung des Versatzes der Energieniveaus der organischen Materialien konnte die Leerlaufspannung in einem Modellsystem maximiert werden. An diesem Modellsystem wurden der Ursprung der Leerlaufspannung und die Rekombinationsdynamik von photogenerierten Ladungsträgern untersucht. Bezüglich der Leerlaufspannung zeigen Solarzellen, deren photoaktive Materialien in einer Mischschicht vorliegen, im Vergleich zu Solarzellen, die eine photoaktive Doppelschicht beinhalten, fundamentale Unterschiede . • Des Weiteren wurden neue Thiophenderivate untersucht, die als aktive Materialien in organischen Solarzellen eingesetzt wurden. Durch elektronenziehende Endgruppen wurde das Ionisationspotential der Thiophenderivate abgesenkt und die optische Bandlücke verringert. Das Thiophenderivat DCV3T fungiert in Kombination mit herkömmlichen Donator-Materialien als Akzeptor. In Mischschichten aus DCV3T und C60 kommt es durch einen Hin- und Rücktransfer der Anregungsenergie zwischen den Materialien statt der Generation von freien Ladungsträgern zu einer Erhöhung der Triplett-Exzitonendichte auf DCV3T . Diese Exzitonen besitzen auf Grund der hohen Lebensdauer von Triplett-Exzitonen das Potential für eine erhöhte Exzitonendiffusionslänge, die in einem neuen Solarzellenkonzept ausgenutzt werden konnte . / Organic solar cells have the potential for light weight and flexible applications. They can be manufactured cost-effectively and can thus contribute to the reduction of the emission of carbon dioxide, methane and nitric oxides. In order to manufacture organic solar cells, only small amounts of organic materials are required. They can be processed at comparably low temperatures. Therefore, the fabrication on substrates like plastic foil is possible. Three different types of organic solar cells exist. The first kinds are solar cells prepared from small molecules that are manufactured via sublimation of the material in a vacuum. The second kind are polymer solar cells manufactured from solution by spin coating techniques or ink jet printing. And thirdly, dye sensitized solar cells - also known as Grätzel cells - consisting of a porous layer of titanium dioxide and most commonly a liquid electrolyte for the charge transport. This work deals exclusively with small molecule solar cells. The highest power conversion efficiencies reached by small molecule organic photovoltaics are now in the range of 5 %. In order to increase the efficiencies of solar cells prepared from small molecules, two major aspects must be developed. The understanding of the physical processes within the organic devices must be improved. And secondly, new materials are required with physical properties optimized for organic photovoltaics. In this work, I followed two strategies for optimizing organic solar cells: • By optimizing the offset of energy levels between donor and acceptor material, the open circuit voltage could be increased. In the investigated model system, the origin of the open circuit voltage and the recombination dynamics of photo generated charge carriers were analyzed. Concerning the open circuit voltage, solar cells consisting of a donor acceptor double layer structure, show fundamental differences to solar cells consisting of a donor acceptor blend. • Furthermore, new thiophene derivatives used as photoactive materials were investigated. By the attachment of electron withdrawing end groups, the ionization potential of the oligothiophenes is increased and the optical band gap is reduced at the same time. The investigated thiophene derivative DCV3T acts as an acceptor in combination with the commonly used donor-materials. A back- and forth-transfer of excitation energy is observed in blends of DCV3T and fullerene C60. In these blends, excitons are not separated into free charge carriers. This back and forth transfer leads to an enhancement of the density of triplet excitons on DCV3T. These excitons have a potentially high diffusion length due to the long lifetime of triplet excitons. This effect was utilized in the organic solar cells.

A series of 3-(p-X-phenyl) thiophene monomers (X= –H, –CH3, – OCH3, –COOC2H5, –COCH3,–NO2) was electrochemically polymerized to furnish polymer films that could be reversibly reduced and oxidized (n- and p-doped). The oxidation potentials of the monomers and formal potentials of the n- and p-doping processes of polymers were correlated with resonance and inductive effects of the substituents on the phenyl ring as well as the semiempirically calculated heats of formation of the monomer radical cations. Moreover, the oxidation potentials of the monomers were correlated with the ionization potentials of the monomers calculated using density functional theory. The reactivity for coupling reactions and the major regioselective products of the polymerization reaction of mono- and oligo-3-phenylthiophenes are inferred from the calculated lone electron spin densities of the respective radical cations. The ionization potentials, which correspond to the energies for generating radical cations during oxidative processes were estimated.

Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal

Synthesis of 2-[(3-thienylcarbonyl)oxy]ethyl 3-thiophene carboxylate (TOET), 2,3-bis-[(3-thienylcarbonyl)oxy]propyl 3-thiophene carboxylate (TOPT), and 3-[(3-thienylcarbonyl)oxy]-2,2-bis{[(3-thienylcarbonyl)oxy]}propyl 3- thiophene carboxylate (TOTPT), and their copolymerization either with thiophene or pyrrole were achieved. The chemical structures of the monomers were investigated by Nuclear Magnetic Resonance Spectroscopy (NMR) and Fourier Transform Infrared Spectroscopy (FTIR). Electrochemical behavior of the monomers and copolymers were studied by cyclic voltammetry (CV). The resultant conducting copolymers were characterized via FTIR, Thermal Gravimetry Analysis (TGA), Differential Scanning Calorimetry (DSC), and morphologies of the films were inspected by Scanning Electron Microscope (SEM). Conductivities of the samples were measured by using four-probe technique. The electrochromic and spectroelectrochemical properties of the copolymers were investigated.

Synthesis and characterization of thiophene ended poly-&amp / #949 / -caprolactone (PCL) and oxalic acid dithiophen-3-yl methyl ester (ODME) and their copolymers with both pyrrole and thiophene were achieved. Chemical structure of the precursor polymer and monomer were investigated Redox behavior of polymer and monomers were determined by Cyclic Voltammetry (CV). Structural characterization of samples were carried out by 1H, 13C Nuclear Magnetic Resonance (NMR) and Fourier Transform Infrared Spectroscopy (FTIR). Conductivities of the films were measured by using four probe technique. Thermal analyses of conducting copolymers were investigated via Differential Scanning Calorimetry (DSC) and Thermal Gravimetry Analysis (TGA). The morphologies of the copolymer films were examined by Scanning Electron Microscopy (SEM). Electrochromic and spectroelectrochemical behavior of the copolymers were investigated, and their ability of employment in device construction has been examined.

Adenosine and adenosine analogues are recognised as cardioprotective agents due to the responses that they induce through the activation of myocardial adenosine receptors. Antioxidants such as nitroxide radicals have also been found to possess cardioprotective properties in biological systems, namely through their ability to scavenge the oxygen-based free radicals that are potentially damaging to tissues and cells. It was envisaged that the linking of an antioxidant moiety to adenosine would produce an adenosine analogue that activates adenosine receptors and also scavenges oxygen-derived free radicals in the body. Consequently, one aim of this project was to synthesise a series of adenosine analogues that possessed a nitroxide or a phenolic antioxidant at the N6 position of the adenosine skeleton. Allosteric ligands have several advantages over orthosteric ligands as potential therapeutic agents, and research into the allosteric enhancement of adenosine receptors is a burgeoning field. It was envisaged that the linking of an antioxidant moiety to an allosteric enhancer would produce a compound that enhances the response of endogenous activation of adenosine receptors and also scavenges oxygen-based free radicals in the body. Consequently, a second aim of this project was to synthesise a series of allosteric enhancers of the A1 adenosine receptor that possessed antioxidant capability endowed by a nitroxide or a phenolic antioxidant functionality. This project has resulted in the synthesis and characterisation of 19 novel N6 substituted adenosine analogues, and additionally 12 novel derivatised thiophenes. Each of the target compounds was tested for its ability to bind to each of the adenosine receptor subtypes and some analogues were found to be potent and selective adenosine receptor agonists.

Neglected diseases constitute a major public health problem worldwide, quantifying a total of 1 billion people suffering from some kind of infection of bacterial, viral or parasitic origin. Among them, we can highlight Chagas disease, caused by the parasite Trypanosoma cruzi, which affects more than 8 million people around the world. In order to discover new active compounds against T. cruzi, developed herein the synthesis of new prototypes of thiophene-2- thioureic and 2-iminothiazolidine rationally designed with potential antichagasic activity, biological evaluation and study docking. Initially, the start material was the polysubstituted thiophene derivatives synthesized via Gewald reaction, which were converted into thioureic derivatives and then cyclized with five different electrophiles, generating thiophene-2- iminothiazolidine derivatives. The intermediates and final compounds were synthesized in yields between 40 and 98%, and characterized by NMR. For docking study was initially performed by minimizing the energy of the ligands by ArgusLab® software, using AM1, and applying the software AutoDock Tools® and AutoDock Vina®, using the Gasteiger method. All compounds were evaluated in the anti-T. cruzi assays, in vitro, and the most active serie was selected for the cytotoxicity assay (MTT) in J774 cell line. It was possible to determine the enzymes involved in the probable mechanisms of action for the ligands. It has been observed that in 50% of cases, TcDHFR enzyme is the main target of the new compounds, in amastigotes. The pharmacological tests in amastigotes and trypomastigotes, line of C2C12 and MK2 cells was established as validation for the theoretical studies. The compound 3d probably develops its mechanism of action by inhibition of the enzyme TcTS (IC50= 10.3 µM) in trypomastigotes of the parasite. Since the compound 7c possibly acts by inhibition of the enzyme TcDHFR (IC50= 9.2 µM) in amastigotes. In additional, it was proposed that the compound 7b carries out its activity by inhibition of the enzyme TcDHFR (IC50 = 5.0 µM). Finally, it was observed that the most active compounds obtained in this study were more effective than the benznidazole, gold standard drug used in pharmacotherapy clinical of the Chagas disease, additionally has a low cytotoxicity (CC50> 100 µM). / As doenças negligenciadas configuram um grande problema de saúde pública mundial, quantificando um total de 1 bilhão de pessoas acometidas por algum tipo de infecção de origem bacteriana, viral ou parasitária. Dentre elas, podemos destacar a Doença de Chagas, causada pelo parasito Trypanosoma cruzi, a qual acomete mais de 8 milhões de pessoas em todo o mundo. No intuito de se descobrir novos compostos ativos capazes de combater o T. cruzi de maneira eficaz, desenvolvemos neste trabalho a síntese de novos protótipos de fármacos tiofeno-2-tioureicos e 2-iminotiazolidínicos racionalmente planejados com potencial atividade antichagásica, avaliação biológica e estudo de docking. Para a síntese dos compostos planejados, partiu-se de derivados tiofenos polissubstituídos, sintetizados via reação de Gewald, os quais foram convertidos em derivados tioureicos e, em seguida, ciclizados com cinco diferentes di-eletrófilos, gerando derivados tiofeno-2- iminotiazolidínicos. Os intermediários e compostos finais foram sintetizados com rendimentos entre 40 e 98%, e caracterizados por RMN. Para o estudo de docking, inicialmente foi realizada a minimização das energias dos ligantes pelo software ArgusLab®, usando o método AM1, e aplicando os softwares AutoDock Tools® e AutoDock Vina®, empregando o método de Gasteiger. Todos os compostos foram submetidos à avaliação in vitro de suas atividades anti-T. cruzi, e a série mais ativa foi selecionada para ensaio de citotoxicidade (MTT) em células da linhagem J774. Foi possível determinar as enzimas envolvidas nos prováveis mecanismos de ação para os ligantes. Foi observado que, em 50% dos casos, a enzima TcDHFR é o principal alvo dos novos composto, em formas amastigotas. Os ensaios farmacológicos em formas amastigotas e tripomastigotas, linhagem de células C2C12 e MK2 funcionaram como métodos de validação dos estudos teóricos. O composto 3d, provavelmente desenvolve seu mecanismo de ação através da inibição da enzima TcTS (IC50= 10.3 µM), em formas tripomastigotas do parasito. Já o composto 7c,possivelmente atua por meio da inibição da enzima TcDHFR (IC50= 9.2 µM) em formas amastigotas. Em adicional, foi proposto que o composto 7b desenvolve sua atividade através da inibição da enzima TcDHFR (IC50= 5.0 µM). Por fim, foi verificado que os compostos mais ativos obtidos neste trabalho se mostraram mais eficientes do que o fármaco benznidazol, padrão-ouro utilizado na clínica farmacológica da doença de Chagas, além destes apresentarem baixa citotoxicidade (CC50> 100 µM).