Chau Wing-Kam. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2005. / Includes bibliographical references (leaves 92-101). / Abstracts in English and Chinese. / Abstract --- p.I / Abstract (Chinese version) --- p.III / Acknowledgement --- p.IV / List of Abbreviations --- p.VIII / List of Tables --- p.IX / List of Figures --- p.X / Chapter Chapter 1 --- Introduction / Chapter 1.1 --- Neurodegenerative diseases --- p.2 / Chapter 1.2 --- Tauopathies --- p.5 / Chapter 1.3 --- Function and structure of Tau --- p.9 / Chapter 1.4 --- Post-translational modifications of Tau --- p.13 / Chapter 1.5 --- Tau protein kinases --- p.17 / Chapter 1.6 --- Tau protein kinase inhibitors --- p.19 / Chapter 1.7 --- Drosophila model of Tauopathies --- p.20 / Chapter 1.8 --- Aims of study --- p.24 / Chapter Chapter 2 --- Materials and methods / Chapter 2.1 --- Drosophila manipulation / Chapter 2.1.1 --- Drosophila genetics --- p.26 / Chapter 2.1.2 --- External fly eye and adult wing morphology examination --- p.27 / Chapter 2.1.3 --- Study of fly wings deformation on Tau kinase overexpression --- p.27 / Chapter 2.2 --- RNA extraction / Chapter 2.2.1 --- Method --- p.28 / Chapter 2.2.2 --- Buffers and reagents --- p.29 / Chapter 2.3 --- Reverse transcription-PCR / Chapter 2.3.1 --- Method --- p.30 / Chapter 2.3.2 --- Buffers and reagents --- p.31 / Chapter 2.4 --- SDS-Polyacrylamide gel electrophoresis / Chapter 2.4.1 --- Method --- p.31 / Chapter 2.4.2 --- Buffers and reagents --- p.32 / Chapter 2.5 --- Western blotting / Chapter 2.5.1 --- Method --- p.32 / Chapter 2.5.2 --- Buffers and reagents --- p.33 / Chapter 2.6 --- Phosphatase treatment of proteins / Chapter 2.6.1 --- Method --- p.34 / Chapter 2.6.2 --- Buffers and reagents --- p.34 / Chapter 2.7 --- Sequential extraction of proteins / Chapter 2.7.1 --- Methods --- p.35 / Chapter 2.7.2 --- Buffers and reagents --- p.36 / Chapter 2.8 --- Sarkosyl extraction of proteins / Chapter 2.8.1 --- Method --- p.37 / Chapter 2.8.2 --- Buffers and reagents --- p.37 / Chapter 2.9 --- Immunostaining / Chapter 2.9.1 --- Method --- p.38 / Chapter 2.9.2 --- Buffers and reagents --- p.38 / Chapter 2.10 --- Lithium treatment of flies / Chapter 2.10.1 --- Method --- p.39 / Chapter 2.10.2 --- Buffers and reagents --- p.40 / Chapter 2.11 --- Quantitation of Lithium ion by atomic absorption spectrometry / Chapter 2.11.1 --- Method --- p.40 / Chapter 2.12 --- Statistical analysis --- p.41 / Chapter Chapter 3 --- Results / Chapter 3.1 --- GAL4/UAS gene expression system in transgenic fly / Chapter 3.1.1 --- Introduction --- p.43 / Chapter 3.1.2 --- Results --- p.47 / Chapter 3.1.3 --- Discussion --- p.52 / Chapter 3.2 --- Tau phosphorylation and Tau-induced toxicity in transgenic fly / Chapter 3.2.1 --- Introduction --- p.52 / Chapter 3.2.2 --- Results / Chapter 3.2.2.1 --- Overexpressed Tau is phosphorylated and toxic in fly --- p.53 / Chapter 3.2.2.2 --- Coexpression of GSK3β/Shaggy or Cdk5 enhance Tau phosphorylation and Tau-induced toxicity --- p.57 / Chapter 3.2.2.3 --- Lithium suppresses Tau phosphorylation and Tau-induced toxicity --- p.64 / Chapter 3.2.3 --- Discussion --- p.68 / Chapter 3.3 --- Tau solubility properties in transgenic fly / Chapter 3.3.1 --- Introduction --- p.69 / Chapter 3.3.2 --- Results / Chapter 3.3.2.1 --- Coexpression of GSKlβ/Shaggy does not alter the sarkosyl solubility of Tau --- p.70 / Chapter 3.3.2.2 --- Coexpression of GSK3β/Shaggy causes a minor alteration of Tau solubility properties --- p.73 / Chapter 3.3.3 --- Discussion --- p.78 / Chapter 3.4 --- Tau aggregate formation in transgenic fly / Chapter 3.4.1 --- Introduction --- p.79 / Chapter 3.4.2 --- Results / Chapter 3.4.2.1 --- Tau aggregates are detected in aged transgenic flies --- p.80 / Chapter 3.4.3 --- Discussion --- p.82 / Chapter 3.5 --- Effect of Lithium on GSK3p/Shaggy-induced wing deformation / Chapter 3.5.1 --- Introduction --- p.83 / Chapter 3.5.2 --- Results / Chapter 3.5.2.1 --- Lithium rescues GSK3β/Shaggy-induced wing deformation --- p.84 / Chapter 3.5.3 --- Discussion --- p.86 / Chapter Chapter 4 --- General discussion --- p.87 / References --- p.92

Thesis (Ph. D.)--University of Virginia, 2007. / Includes bibliographical references. Also available online through Digital Dissertations.

I formally joined Prof. M. R. N. Murthy’s laboratory at the Molecular Biophysics Unit, Indian institute of Science, on 1st August 2001. During that time, the interest in the laboratory was mainly focused on structural studies on a number of capsid mutants of two plant viruses, sesbania mosaic virus and physalis mottle virus, to gain an insight into the virus structure and its assembly. Besides these two projects, there were a few other collaborative projects running in the lab at that time such as NIa protease from pepper vein banding virus and diaminopropionate ammonia lyase from Escherichia coli with Prof. H. S. Savithri, triosephosphate isomerase from Plasmodium falciparum with Prof. P. Balaram and Prof. H. Balaram and a DNA binding protein (TP2) with Prof. M. R. S. Rao. During my first semester, along with my course work, I was assigned to make an attempt to purify and crystallize recombinant NIa protease and TP2 protein. I started with NIa protease which could be purified using one step Ni-NTA affinity column chromatography. Although the expression and protein yield were reasonably good, protein precipitated with in a couple of hours after purification. Attempts were made to prevent the precipitation of the purified enzyme and towards this end we were successful to some extent. However, during crystallization trials most of the crystallization drops precipitated completely even at low protein oncentration. TP2 protein was purified using three-step chromatographic techniques by one of the project assistant in Prof. M. R. S. Rao’s laboratory. Because of low expression level and three step purification protocol, protein yield was not good enough for complete crystallization screening. Hits obtained from our initial screening could not be confirmed because of low protein yield as well as batch to batch variation. My attempts to crystallize these two proteins remained unsuccessful but in due course I had learnt a great deal about the tips and tricks of expression, purification and mainly crystallization. To overcome the problems faced with these two proteins, we decided to make some changes in the gene construct and try different expression systems. By this time (beginning of 2002), I had finished my first semester and a major part of the course work, so we decided to start a new project focusing on some of the unknown enzymes from a metabolic pathway. Dr. Parthasarathy, who had finished his Ph. D. from the lab, helped me in literature work and in finding targets for structural studies. Finally, we decided to target enzymes involved in the propionate etabolism. The pathways for propionate metabolism in Escherichia coli as well as Salmonella typhimurium were just established and there were no structural information available for most of the enzymes involved in these pathways. Since, propionate metabolic pathways were well described in the case of Salmonella typhimurium, we decided to use this as the model organism. We first started with the enzymes present in the propionate catabolic pathway “2-methylcitrate pathway”, which converts propionate into pyruvate and succinate. 2-methylcitrate pathway resembles the well-studied glyoxylate and TCA cycle. Most of the enzymes involved in 2-methylcitrate pathway were not characterized biochemically as well as structurally. First, we cloned all the four enzymes PrpB, PrpC, PrpD and PrpE present in the prpBCDE operon along with PrpR, a transcription factor, with the help of Dr. P.S. Satheshkumar from Prof. H. S. Savithri’s laboratory. Since these five proteins were cloned with either N- or C-terminal hexa-histidine tag, they could be purified easily using one-step Ni-NTA affinity column chromatography. PrpB, PrpC and PrpD had good expression levels but with PrpE and PrpR, more than 50% of the expressed protein went into insoluble fraction, probably due to the presence of membrane spanning domains in these two enzymes. Around this time, crystallization report for the PrpD from Salmonella was published by Ivan Rayment’s group, so after that we focused only on the remaining four proteins leaving out PrpD. Our initial attempts to crystallize these proteins became successful in case of PrpB, 2-methylisocitrate lyase. We collected a complete diffraction data to a resolution of 2.5 Å which was later on extended to a resolution of 2.1 Å using another crystal. Repeated crystallization trials with PrpC also gave small protein crystals but they were not easy to reproduce and size and diffraction quality always remained a problem. Using one good crystal obtained for PrpC, data to a resolution of 3.5 Å could be collected. Unfortunately, during data collection due to failure of the cryo-system, a complete dataset could not be collected. Further attempts to crystallize this protein made by Nandashree, one of my colleagues in the lab at that time, was also without much success. Attempts to purify and crystallize PrpE and PrpR were made by me as well as one of my colleagues, Anupama. In this case, besides crystallization, low expression and precipitation of the protein after purification were major problems. Our attempt to phase the PrpB data using the closest search model (phosphoenolpyruvate mutase) by molecular replacement technique was unsuccessful,probably because of low sequence identity between them (24%). Further attempts were made to obtain heavy atom derivatives of PrpB crystal. We could obtain a mercury derivative using PCMBS. However, an electron density map based on this single derivative was not nterpretable. Around this time, the structure of 2-methylisocitrate lyase (PrpB) from E. coli was published by Grimm et. al. The structure of Salmonella PrpB could easily be determined using the E. coli PrpB enzyme as the starting model. We also solved the structure of PrpB in complex with pyruvate and Mg2+. Our attempts to crystallize PrpB with other ligands were not successful. Using the structures of PrpB and its complex with pyruvate and Mg2+, we carried out comparative studies with the well-studied structural and functional homologue, isocitrate lyase. These studies provided the plausible rationale for different substrate specificities of these two enzymes. Due to unavailability of PrpB substrate commercially and the extensive biochemical and mutational studies carried out by two different groups made us turn our attention to other enzymes in this metabolic pathway. Since our repeated attempts to obtain good diffraction quality crystals of PrpC, PrpE and PrpR continued to be unsuccessful, we decided to target other enzymes involved in propionate metabolism. We looked into the literature for the metabolic pathways by which propionate is synthesized in the Salmonella typhimurium and finally decided to target enzymes present in the metabolic pathway which converts L-threonine to propionate. Formation of propionate from L-threonine is the most direct route in many organisms. During February 2003, we initiated these studies with the last enzyme of this pathway, propionate kinase (TdcD), and within a couple of months we could obtain a well-diffracting crystal in complex with ADP and with a non-hydrolysable ATP analog, AMPPNP. TdcD structure was solved by molecular replacement using acetate kinase as a search model. Propionate kinase, like acetate kinase, contains a fold with the topology βββαβαβα, identical with that of glycerol kinase, hexokinase, heat shock cognate 70 (Hsc70) and actin, the superfamily of phosphotransferases. Examination of the active site pocket in propionate kinase revealed a plausible structural rationale for the greater specificity of the enzyme towards propionate than acetate. One of the datasets of TdcD obtained in the presence of ATP showed extra continuous density beyond the γ-phosphate. Careful examination of this extra electron density finally allowed us to build diadenosine tetraphosphate (Ap4A) into the active site pocket, which fitted the density very well. Since the data was collected at a synchrotron source to a resolution of 1.98 Å, we could identify the ligand in the active site pocket solely on the basis of difference Fourier map. Later on, co-crystallization trials of TdcD with commercially available Ap4A confirmed its binding to the enzyme. These studies suggested the presence of a novel Ap4A synthetic activity in TdcD, which is further being examined by biochemical experiments using mass-spectrometry as well as thin-layer chromatography experiments. By the end of 2004, we shifted our focus to the first enzyme involved in the anaerobic degradation of L-threonine to propionate, a biodegradative threonine deaminase (TdcB). Sagar Chittori, who had joined the lab as an integrated Ph. D student, helped me in cloning this enzyme. My attempt to crystallize this protein became finally successful and datasets in three different crystal forms were collected. Dataset for TdcB in complex with CMP was collected during a synchrotron trip to SPring8, Japan by my colleague P. Gayathri and Prof. Murthy. TdcB structure was solved by molecular replacement using the N-terminal domain of biosynthetic threonine deaminase as a search model. Structure of TdcB in the native form and in complex with CMP helped us to understand several unanswered questions related to ligand mediated oligomerization and enzyme activation observed in this enzyme. The structural studies carried out on these three enzymes have provided structural as well as functional insights into the catalytic process and revealed many unique features of these metabolic enzymes. All these have been possible mainly due to proper guidance and encouragement from Prof. Murthy and Prof. Savithri. Prof. Murthy’s teaching as well as discussions during the course of investigation has helped me in a great deal to learn and understand crystallography. Collaboration with Prof. Savithri kept me close to biochemistry and molecular biology, the background with which I entered the world of structural biology. The freedom to choose the project and carry forward some of my own ideas has given me enough confidence to enjoy doing research in future.

Analysis of signaling cascade of protein kinase StkP in Streptococcus pneumoniae Streptococcus pneumoniae is not only an important human pathogen but also an appropriate model organism to investigate cell division in ovoid bacteria. This bacterium lacks both, NO and Min systems for selection of cell division site. Thus, the mechanism which determines the site of cell division is unknown. Additionally, the genome of S. pneumoniae encodes a single gene for eukaryotic-like serine/threonine protein kinase StkP and a single gene for eukaryotic-like serine/threonine protein phosphatase of PP2C type called PhpP. StkP is one of the main regulators of cell division. Cell division is probably affected by the phosphorylation of its substrates, which include, among others, cell division proteins FtsZ, FtsA, DivIVA, MacP, Jag/KhpB/EloR, and LocZ/MapZ. The aim of the first project of this dissertation thesis is determination of the function of protein LocZ in the cell division. In summary, locZ is not essential, however, it is involved in proper septum placement in S. pneumoniae and our data suggest that it is a positive regulator of Z-ring placement. Cells lacking LocZ are able to form Z-ring, but the Z-ring is spatially misplaced resulting in cell division defects, shape deformation, and generation of unequally sized,...

BACKGROUND:General, breed- and diet-dependent associations between feed efficiency in beef cattle and single nucleotide polymorphisms (SNPs) or haplotypes were identified on a population of 1321 steers using a 50K SNP panel. Genomic associations with traditional two-step indicators of feed efficiency - residual feed intake (RFI), residual average daily gain (RADG), and residual intake gain (RIG) - were compared to associations with two complementary one-step indicators of feed efficiency: efficiency of intake (EI) and efficiency of gain (EG). Associations uncovered in a training data set were evaluated on independent validation data set. A multi-SNP model was developed to predict feed efficiency. Functional analysis of genes harboring SNPs significantly associated with feed efficiency and network visualization aided in the interpretation of the results.RESULTS:For the five feed efficiency indicators, the numbers of general, breed-dependent, and diet-dependent associations with SNPs (P-value<0.0001) were 31, 40, and 25, and with haplotypes were six, ten, and nine, respectively. Of these, 20 SNP and six haplotype associations overlapped between RFI and EI, and five SNP and one haplotype associations overlapped between RADG and EG. This result confirms the complementary value of the one and two-step indicators. The multi-SNP models included 89 SNPs and offered a precise prediction of the five feed efficiency indicators. The associations of 17 SNPs and 7 haplotypes with feed efficiency were confirmed on the validation data set. Nine clusters of Gene Ontology and KEGG pathway categories (mean P-value<0.001) including, 9nucleotide binding / ion transport, phosphorous metabolic process, and the MAPK signaling pathway were overrepresented among the genes harboring the SNPs associated with feed efficiency.CONCLUSIONS:The general SNP associations suggest that a single panel of genomic variants can be used regardless of breed and diet. The breed- and diet-dependent associations between SNPs and feed efficiency suggest that further refinement of variant panels require the consideration of the breed and management practices. The unique genomic variants associated with the one- and two-step indicators suggest that both types of indicators offer complementary description of feed efficiency that can be exploited for genome-enabled selection purposes.

Cronobacter species cause serious infections such as meningitis and enteritis in newborns and neonates, with the major vehicle being contaminated powdered infant formula. The main objectives of this study were i) to identify potential virulence factors, such as enterotoxin production; ii) characterize the gene(s) involved in adhesion and invasion of the human brain microvascular endothelial cells (HBMEC); and iii) determine whether strains from clinical, food, and environmental sources differ in their ability to produce surface-attached bacterial aggregates, known as biofilms. Random transposon mutagenesis was used on strains demonstrating the best adherence and invasion to blood- brain barrier cell lines (BBB). Isogenic mutants were then screened for increased or decreased adherence and invasion. Screening of the transposon library identified one isogenic mutant of a clinical strain which lost the ability to adhere to BBB cells. The transposon rescue revealed the insertion site to be within a diguanylate cyclase (DGC) gene. The major function of DGC in many Gram-negative bacteria is to synthesize cyclic diguanylate (c-di-GMP), a secondary bacterial metabolite known for regulating biofilm formation, motility, and virulence or aspects of microbial pathogenicity. Based on the findings of this study, DGC appears to play an important role in Cronobacter species’ ability to produce biofilms and may also have a role of the pathogenicity in the microorganism.

Le séquençage intégral du génome de Mycobacterium tuberculosis a permis de mettre en évidence l’existence de onze Sérine/Thréonine Protéine-Kinases (STPKs) chez cette bactérie. Bien que la quasi-totalité des STPKs aient été biochimiquement caractérisées, très peu de substrats endogènes ont pu être identifiés. Par conséquent, le rôle physiologique de ces couples kinase/substrat reste à élucider. Tout d’abord, les études réalisées au cours de ce travail ont concerné la caractérisation biochimique de la protéine-kinase PknL, ainsi que l’identification de ses substrats potentiels, et notamment la protéine Rv2175c. En effet, l’analyse de l’environnement génétique du gène pknL de la kinase a révélé la présence du gène adjacent rv2175c, pouvant ainsi représenter un substrat éventuel de PknL. Les différentes approches mises en oeuvre ont permis d’identifier cinq sites de phosphorylation sur PknL, et de mettre en évidence le caractère essentiel des résidus K48, T173 et T175 dans les mécanismes d’autophosphorylation de PknL et de phosphorylation de Rv2175c, confirmant ainsi Rv2175c comme substrat spécifique de PknL. Par ailleurs, la caractérisation par RMN de la structure de Rv2175c a permis de déterminer la fonction de cette protéine. Rv2175c possède toutes les caractéristiques structurales d’une protéine capable de fixer l’ADN. Des études fonctionnelles ont permis de confirmer la capacité de Rv2175c de fixer l'ADN et ont mis en évidence le mécanisme de régulation via phosphorylation régissant son activité de fixation. Ensuite, nous avons mis en évidence la phosphorylation des protéines chaperonnes mycobactériennes et, plus particulièrement, caractérisé GroEL1. Nous avons démontré que GroEL1 était phosphorylée par PknF, et identifié les résidus T25 et T54 comme étant les sites de phosphorylation de GroEL1. L’ensemble de cette étude nous a donc permis de caractériser de nouveaux substrats de phosphorylation chez M. tuberculosis, de mieux appréhender les interactions kinase/substrat et d’impliquer la phosphorylation dans la régulation de l’activité de ces substrats / Analysis of the genome sequence of Mycobacterium tuberculosis predicted the presence of eleven Serine / Threonine Protein-Kinases (STPKs). Although most kinases have been investigated for their physiological roles, little information is available regarding how STPK-dependent phosphorylation regulates the activity of kinase substrates. As a result, the physiological role of these kinase / substrate couples remains to be clarified. During the course of this work, we first characterized a substrate/kinase pair, PknL/Rv2175c. Moreover, pknL (rv2176) is adjacent to rv2175c, a gene encoding a putative DNA-binding transcriptional regulator. We demonstrated that PknL can recruit and phosphorylate Rv2175c and that phosphorylation of Rv2175c was dependent on a specific phosphorylated residue located within the activation loop of PknL. However, although Rv2175c harbours a DNAbinding domain carrying a helix-turn-helix (HTH) motif, it shares only weak similarity to transcriptional regulatory proteins. Therefore, to provide further evidence for the function of Rv2175c, we have solved the soluble NMR structure of Rv2175c. In addition, we confirmed by gel shift mobility assays that Rv2175c was indeed able to bind DNA. More importantly, we identified Thr9 as the unique phosphorylation site in Rv2175c, and demonstrated that phosphorylation of Rv2175c strongly altered its DNA-binding activity. In addition, although mycobacterial GroEL1 proteins have been extensively studied, no data were available with respect to their potential post-translational modifications. We reported here, for the first time, phosphorylation of the M. tuberculosis GroEL1 chaperone. We demonstrated that M. tb GroEL1 is phosphorylated by PknF at two positions, Thr25 and Thr54. Unexpectedly, Mycobacterium smegmatis GroEL1 is not a substrate of its cognate PknF. This study showed that the phosphorylation profile of conserved proteins is species dependent and provides insights that may explain the numerous biological functions of these important proteins

Spr0334, new protein of cell division in Streptococcus pneumoniae Streptococcus pneumoniae is an important human pathogen. The geonome of this bacteria encodes a single gene for eukaryotic-like serine / threonine protein kinase called StkP. StkP regulates many physiological processes such as pathogenesis, competence for genetic transformation, resistance to various stresses and resistance to antibiotics. It also affects the transcription of many genes involved in cell wall biosynthesis, pyrimidine metabolism, DNA repair and iron uptake. Recent studies have shown that StkP is located in the cell division septum and significantly regulates cell division and morphology. Its substrates include, among others, cell division protein DivIVA, FtsZ and FtsA. Analysis of phosphoproteome maps of wild type and ΔstkP mutant strain of S. pneumoniae showed that in vivo StkP phosphorylates several putative substrates including the protein Spr0334. Mass spectrometry analysis identified phosphorylation sites of the protein Spr0334: threonine 67 and threonine 78. Furthermore, it was found that the protein Spr0334 is located in the cell division septum, which led to the hypothesis that it could be newly identified cell division protein in S. pneumoniae. The main aim of this thesis was to describe the function of the...

O receptor P2X4 (canal iônico controlado por adenosina-5\'-trifosfato-ATP) está amplamente distribuído no sistema nervoso central e, após sua ativação, pode regular os níveis de cálcio intracelulares via permeação direta e por ativação de canais de cálcio voltagem-dependentes. Tem sido proposto que a atividade do receptor pode ser importante na plasticidade sináptica. Tendo em vista a importância do receptor P2X4, sobretudo na fisiologia do sistema nervoso central, é útil caracterizá-lo farmacologicamente e entender os mecanismos moleculares que regulam sua atividade. Examinamos o papel que resíduos específicos N- e C-terminais desempenham na atividade do receptor P2X4 humano, combinando técnicas de biologia molecular, bioquímica e patch-clamp em células de rim de embrião humano (células HEK-293T). Células HEK-293T expressando o receptor P2X4 wild-type apresentaram correntes iônicas, cujas amplitudes dependeram da concentração de ATP, fornecendo um valor de EC50 de 1,37 ± 0,21 &#181;M. Os receptores mutantes E14A e D16A exibiram respostas ao ATP equiparáveis àquelas do receptor selvagem, ao passo que os mutantes Y15A e T17A não foram funcionais, apesar de serem expressos na membrana plasmática das células. A inibição de tirosina fosfatases por pervanadato diminuiu fortemente correntes induzidas por ATP. Subsequente análise de citometria de fluxo na presença de um anticorpo contra resíduos de fosfotirosina indicaram que, entre as células que expressam o receptor P2X4, a percentagem de células fosfo-tirosina-positivas é a mesma para os mutantes Y372A (86 ± 10%) e Y378A (79 ± 6.9%), mas substancialmente menor para os mutantes Y15A (35 ± 12%), Y367A (48 ± 6.4%) e Y372F (31 ± 1.7%), quando comparados com células que expressam o receptor wild-type (76 ± 5.6%). Resultados semelhantes foram obtidos quando quantificamos a expressão relativa de proteínas fosforiladas em resíduos de tirosina e expressamos através dos valores de intensidade de fluorescência média. Ensaios de western-blot revelaram que mesmo o mutante T17A é fosforilado em resíduos de treonina, sugerindo que o receptor P2X4 contém outros sítios de fosforilação. Entretanto, nenhum sinal de fosfotirosina foi detectado no receptor wild-type e nos mutantes, em que resíduos de tirosina foram substituídos por alanina ou fenilalanina. Não parece ser o resíduo Y15 o alvo de tal fosforilação, cabendo a ele um papel estrutural mais importante. Nossos dados também sugerem que a fosforilação em resíduos de tirosina de proteínas intermediárias regula a atividade do receptor P2X4. / The human P2X4 receptor (ATP-gated ion channel) is widely distributed in the CNS and, after activation, participates in regulation of levels of intracellular calcium through direct permeation and activation of voltage-dependent calcium channels with well-defined functions including synaptic plasticity. Given the importance of the P2X4 receptor, especially in CNS physiology, we investigated the role that specific N- and C-termini residues play in human P2X4 receptor activity, by combining techniques of molecular biology, biochemistry and patch-clamping in human embryonic kidney cells (HEK-293T cells). HEK-293T cells expressing the wild-type P2X4 receptor showed ionic currents whose amplitudes depended on the ATP concentration, providing an EC50 value of 1.37 ± 0.21 mM. E14A and D16A receptor mutants exhibited responses to ATP comparable to those ones of wild-type receptor, whereas Y15A and T17A mutants were not functional, despite being expressed in the plasma membrane of cells. The inhibition of tyrosine phosphatases by pervanadate decreased strongly ATP-induced currents. Subsequent flow cytometry analysis in the presence of an antibody against phosphotyrosine residues indicated that, among the cells that express the P2X4 receptor, the percentage of phosphotyrosine-positive cells was the same for Y372A (86 ± 10%) and Y378A (79 ± 6.9%) mutants, however, substantially lower for Y15A (35 ± 12%), Y367A (48 ± 6.4%) and Y372F (31 ± 1.7%) mutants when compared with cells expressing the wild-type receptor (76 ± 5.6%). Similar results were obtained by quantifying the relative expression of phosphotyrosine proteins. Western blot assays revealed that even the T17A mutant was phosphorylated at threonine residues, suggesting that the human P2X4 receptor also contains further phosphorylation sites. However, no phosphotyrosine-antibody signal was detected in the wild-type receptor and mutants in which tyrosine residues were replaced by alanine or phenylalanine. The residue Y15 is supposedly not the target of such phosphorylation, despite its important structural role. However, the present work indicates that tyrosine phosphorylation of intermediate signaling proteins regulates P2X4 receptor activity.

A semente de milho, base da alimentação em muitos países na África, Ásia e América Latina, possui ~10% de proteína na semente. Por ser um cereal a proteína da semente de milho apresenta uma baixa concentração de aminoácidos essenciais como: lisina e triptofano. Com a descoberta do milho opaco-2, o qual apresenta um maior teor de lisina e triptofano em suas sementes, surgiu a oportunidade de se desenvolver milhos com qualidade protéica, aumentando o conteúdo de aminoácidos e a qualidade nutricional dos grãos. Assim, surgiu o milho QPM (quality protein maize), milho de alta qualidade protéica, melhorado pelo CIMMYT (México). O QPM possui duas vezes mais lisina que o milho normal mantendo a sua produtividade equivalente. A EMBRAPA, Milho e Sorgo, desenvolveu duas variedades QPM comercializadas: BR451 e BR473. A linhagem QPM 161 (EMBRAPA Milho e Sorgo) teve suas proteínas de reserva analisadas bioquimicamente neste trabalho, concluindo que o QPM 161, possui uma concentração maior de lisina em suas sementes, chegando a superar o BR 451 e a manter a mesma concentração de lisina que o BR 473. Em outra parte do trabalho, sementes imaturas (14, 20 e 14 DAP) das linhagens 161, assim como as do selvagem W22+ e de seus mutantes W22o10, W22o11 e W22o13, foram utilizadas para caracterizar a enzima homoserina quinase (HK). A HK faz parte da via de biossíntese do aminoácido essencial treonina. Constatou-se que uma alta atividade desta enzima está relacionada ao aumento de treonina na semente, porém, a alta atividade de HK foi observada nos menores estágios de maturação. Assim os resultados mostram que mais estudos sobre a regulação desta enzima devem ser realizados para que se possam desenvolver sementes ricas em lisina e também em treonina. / Maize which is the staple food in many countries in Africa, Asia and Latin America, has ~10% of protein in the seeds. Maize seeds protein presents low contents of essential amino acids, such as lysine and tryptophan. Since the discovery of the opaque-2 maize, a recessive mutation that results in high concentrations of lysine and tryptophan, the major challenge has been to develop better quality protein maize to increase the rate of amino acids consumed by population. The QPM (quality protein maize), originally produced and breeded at CIMMYT in Mexico, came to solve the issue. The QPM protein has twice as much lysine and tryptophan, with the same yield of normal maize. The EMBRAPA, Maize and Sorghum, has bred two QPM varieties that are already commercialized (BR 451 and BR 473), but to increase the quality of the Brazilian QPM, EMBRAPA developed a new QPM line, the 161, whose storage proteins were biochemically analyzed in this study. Line 161 exhibited a higher lysine concentration than BR 451, but about the same concentration of that exhibited by BR 473. Further analyses conducted in this research involved the study of immature seeds (14, 20 and 24 DAP) of line 161, and the wild-type W22+ and its counterpart mutants W22o10, W22o11 and W22o13, and the characterization of the enzyme homoserine kinase (HK). HK is a key enzyme of the threonine biosynthetic pathway. The high HK activity was shown to be related to the increased threonine concentration in the maize seeds. HK activity was shown to reach the highest level in the first developmental stage, whereas in the last developmental stage the activity is lower and so is the rate of threonine. Therefore, it is necessary more studies on HK regulation to improve the mature maize seeds with the best rate of lysine and threonine.