Dans le cadre des études sur le stockage de colis de déchets nucléaires, l'effet de la température sur les propriétés de rétention de l'ion uranyle sur Zr2O(PO4)2 a été étudié en milieu NaClO4 0,1 M. Dans un premier temps, l'effet de la température sur les propriétés acido-basiques de la surface (point de charge nulle, constantes d'acidité) a été suivi. Des expériences en réacteurs fermés ont été effectuées à des températures allant de 25°C à 90°C : la sorption des ions uranyle est favorisée avec l'augmentation de la température indiquant un processus de sorption de nature endothermique. La caractérisation des complexes de surface a été effectuée à l'aide des techniques spectroscopiques SLRT et EXAFS. Les mesures SLRT montrent la présence de deux complexes de surface différents. La nature de ces complexes ne se modifie pas avec le pH (3-5) ni la température (25°C-90°C). Par ailleurs, la spectroscopie EXAFS a mis en évidence la formation de complexes de sphère interne, bidentates. L'information structurale a été ensuite utilisée pour la modélisation des sauts de sorption. Pour le calcul des constantes de sorption, un modèle à capacité constante a été utilisé. Les équilibres de sorption modélisés ont révélé la formation des complexes de sorption : (>ZrOH)2UO22+ et (>PO)2UO2. La dépendance en température des constante de sorption a été ensuite utilisée pour déterminer les grandeurs thermodynamiques associées (ΔH° et ΔS°) par l'application de l'équation de van't Hoff. La variation d'enthalpie de formation du complexe (>ZrOH)2UO22+ est nulle, alors que celle du complexe (>PO)2UO2 est positive (55 kJ/mol), confirmant le caractère endotermique de la réaction de sorption.

Inositolpyrophosphate (PP InsPs) sind Signalmoleküle in eukaryotischen Zellen, die u.a. als Sensoren für ATP- und Phosphat fungieren, und insbesondere durch allosterische Regulation und posttranslationale Modifikationen (PTMs) wirken. Diese Arbeit ist in zwei Teile unterteilt, die sich auf zwei verschiedene ungewöhnliche Eigenschaften dieser Moleküle konzentrieren. Der erste Teil untersucht PP-InsPs in Lösung, mit Schwerpunkt auf ihrer Fähigkeit, abhängig von pH und Metallionen ihre Konformation zu ändern. Diese Eigenschaft ist einzigartig unter biologisch vorkommenden kleinen Molekülen. Drei eng verwandte Moleküle, InsP6, 5PP InsP5 und InsP8, wurden mittels NMR Spektroskopie charakterisiert, um herauszufinden, ob sie unter annähernd zytosolischen Bedingungen ihre Konformation ändern können. Dies war der Fall für InsP8, welches deshalb bezüglich Protonierung und Komplexbildung genauer untersucht wurde. Zu guter Letzt konnten ITC Experimente demonstrieren, dass eine Lösungsumgebung, die die Konformationsänderung von InsP8 begünstigt, auch seine Bindung an eine damit interagierende Proteindomäne verstärkt. Der zweite Teil beschäftigt sich mit der Pyrophosphorylierung von Proteinen, einer PTM, die nach derzeitigem Wissen non-enzymatisch von PP InsPs auf phosphorylierte Aminosäurereste übertragen wird – im Gegensatz zur enzymatischen Phosphorylierung durch Kinasen. Ein Probenvorbereitungsprotokoll zum Nachweis von endogener Pyrophosphorylierung in Zellen wurde entwickelt und mit synthetischen Standardpeptiden validiert. Anschließend wurde es an drei menschlichen Zelllinien erprobt, und konnte über einhundert Modifikationsstellen identifizieren, zumeist auf Proteinen im Zellkern. Dies beweist zum ersten Mal die Existenz von endogener Pyrophosphorylierung. Proteomics an Knockout-Zelllinien bestätigten die Hypothese, dass Pyrophosphorylierung von 5PP-InsP5 (InsP7) abhängig ist. Mikroskopie und qPCR-Experimente lieferten Hinweise auf eine Funktion in der Regulation der Ribosomenbiogenese. / Inositol pyrophosphates (PP-InsPs) are messenger molecules in eukaryotic cells, that serve as sensors of phosphate and ATP, among other functions, signaling e.g. through allosteric regulation and posttranslational modifications. This work is structured into two parts, focusing on two different unusual features of these molecules. The first part investigates PP-InsPs in solution, with emphasis on the messengers’ ability to undergo a pH and metal ion dependent conformational change, a feature unique among biological small molecules. Three closely related molecules, InsP6, 5PP InsP5 and InsP8 were characterized by NMR, to determine if they could change conformation under conditions approximating a cytosolic environment. This was the case for InsP8, which was therefore studied in more detail regarding protonation and complexation. Finally, ITC experiments showed that solution conditions favoring the conformational change of InsP8 also improved its binding to a known interacting protein domain. The second part of the thesis is concerned with protein pyrophosphorylation, a post-translational modification thought to be transferred non-enzymatically from PP InsPs to phosphorylated amino acid residues – opposed to the usual enzymatic phosphorylation through kinases. A sample preparation workflow for detection of endogenous pyrophosphorylation in cells has been developed and validated using synthetic standard peptides. It was then applied to three human cell lines, discovering more than one hundred modified sites, mostly on nuclear proteins, and proving for the first time the existence of endogenous pyrophosphorylation. Proteomics on knockout cell lines confirmed the hypothesis that pyrophosphorylation depends on 5PP-InsP5 (InsP7). Finally, microscopy and qPCR experiments suggested a regulatory role in ribosome biogenesis.

The Ph.D. project compiled in this thesis has focused on the role of the solvent in solid-liquid phase equilibria and in nucleation kinetics. Six organic substances have been selected as model compounds, viz. ortho-, meta- and para-hydroxybenzoic acid, salicylamide, meta- and para-aminobenzoic acid. The different types of crystal phases of these compounds have been explored, and their respective solid-state properties have been determined experimentally. The solubility of these crystal phases has been determined in various solvents between 10 and 50 oC. The kinetics of nucleation has been investigated for salicylamide by measuring the metastable zone width, in five different solvents under different experimental conditions. A total of 15 different crystal phases were identified among the six model compounds. Only one crystal form was found for the ortho-substituted compounds, whereas the meta-isomeric compounds crystallized as two unsolvated polymorphs. The para-substituted isomers crystallized as two unsolvated polymorphs and as several solvates in different solvents. It was discovered that the molar solubility of the different crystal phases was linked to the temperature dependence of solubility. In general, a greater molar solubility corresponds to a smaller temperature dependence of solubility. The generality of this relation for organic compounds was investigated using a test set of 41 organic solutes comprising a total of 115 solubility curves. A semi-empirical solubility model was developed based on how thermodynamic properties relate to concentration and temperature. The model was fitted to the 115 solubility curves and used to predict the temperature dependence of solubility. The model allows for entire solubility curves to be constructed in new solvents based on the melting properties of the solute and the solubility in that solvent at a single temperature. Based on the test set comprising the 115 solubility curves it was also found that the melting temperature of the solute can readily be predicted from solubility data in organic solvents. The activity of the solid phase (or ideal solubility) of four of the investigated crystal phases was determined within a rigorous thermodynamic framework, by combining experimental data at the melting temperature and solubility in different solvents and temperatures. The results show that the assumptions normally used in the literature to determine the activity of the solid phase may give rise to errors up to a factor of 12. An extensive variation in the metastable zone width of salicylamide was obtained during repeated experiments performed under identical experimental conditions. Only small or negligible effects on the onset of nucleation were observed by changing the saturation temperature or increasing the solution volume. The onset of nucleation was instead considerably influenced by different cooling rates and different solvents. A correlation was found between the supersaturation ratio at the average onset of nucleation and the viscosity of the solvent divided by the solubility of the solute. The trends suggest that an increased molecular mobility and a higher concentration of the solute reduce the metastable zone width of salicylamide. / QC 20100831