Due to the pandemic, research concerning SARS-CoV-2 became of the utmost importance. In this research, we aimed to find and synthesize a library of peptide epitopes that carry functional properties of the ACE-2 receptor binding to the virus protein for the purpose of creating a therapeutic treatment (i.e. viral inhibition). In order to do this, we used MST to determine binding affinity. After that, we validated the binding properties of our peptide epitopes and applied them as SARSCoV-2 antibody indicators using ELISA. We, then, functionalized gold nanoparticles with the peptide epitopes to assess its utility as a potential SARS-CoV-2 competitive inhibitor. From the set of peptides in the library, P25 showed the most functional properties in both MST and serological ELISA, while P1 successfully conjugated to the gold nanoparticles in different forms (PEG-P1, linker-P1, and mutated P1). Finally, P1 was validated to have antibody binding through sandwich ELISA. In the future, these findings can be applied to inhibit viral activity through drug delivery.

>Magister Scientiae - MSc / Current research classifies Type 2 diabetes as most prevalent non-communicable diseases in South Africa. Approximately 285 million people are affected globally with an expected increase to 595 million by the year 2035. Synthetic first-line drugs in the treatment of Type 2 diabetes, have been shown to have an efficacy rate of approximately 43% as a result of poor drug uptake and metabolism. Furthermore, given South Africa’s uniquely diverse botanical heritage, herbs commonly used traditional medicine have shown promise in the treatment of Type 2 diabetes.

The application of silicon nanocrystals as non-toxic bio-labels and downconverters requires their uniform size distribution in order to minimize the inhomogeneous broadening of the photoluminescence peak. In this thesis, we set the basis for their size-separation via the density-gradient centrifugation method. To be more precise, we successfully apply this technique to separate 5 and 10 nm gold nanoparticles from an ensemble by using an engineered medium layer stack. In addition, we explain how atomic force microscopy is used to measure the size of the nanoparticles, with a particular attentionon the removal of unwanted solvent-related effects. As a future plan, we will implement the technique for the size-separation of silicon nanocrystals.

>Magister Scientiae - MSc / Recently researchers reported that nanoparticles functionalised through chemical methods possess risks to the environment and to the human health since they use hazardous chemicals and produce toxic waste. The increasing demand of nanomaterials for application in the field of science require an alternative method for synthesis of nanomaterials that are environmentally friendly, eco-friendly and non-toxic. The present study describes the green synthesis method for functionalisation of nanomaterials. Green synthesis methods are considered as a novel approach for functionalisation of nanoparticles using biological sources. / 2022

Upconverted light from nanostructured metal surfaces can be produced by harmonic generation and multi-photon luminescence; however, these are weak processes and require extremely high field intensities to produce a measurable signal. Here we report on bright emission, five orders of magnitude greater than harmonic generation, that can be seen from metal tunnel junctions due to light-induced inelastic tunneling. Like inelastic tunneling light emission, which was recently reported to have 2% conversion efficiency per tunneling event, the emission wavelength recorded varies with the local electric field applied; however, here the field is from a 1560 nm femtosecond pulsed laser source. Finite-difference time-domain simulations of the experimental conditions show the local field is sufficient to generate tunneling-based inelastic light emission in the visible regime. This phenomenon is promising for producing ultrafast upconverted light emission with higher efficiency than conventional nonlinear processes. / Graduate

Organodithiols including para-aryl dithiols (PADTs, HS-(C6H4)n-SH, n = 1, 2 and 3) and alpha, omega-alkanedithiols (ADTs, HS-(CH2)n-SH, n = 2, 4, …) with two distal thiols have been used extensively in molecular electronics, surface-enhanced Raman spectroscopy (SERS), and quantum electron tunneling between two gold or silver nanoparticles (AuNPs and AgNPs). The popular belief is that these dithiols cross-link noble metal nanoparticles (NPs) as monolayer dithiolate spacers. Reported is the finding that PADTs predominantly exist as monothiolate forms on AuNPs or AgNPs. No PADT-induced NP cross-linking was observed regardless of NP/PADT concentration ratios. 1,4-benzenedimethanethiol (HS-CH2-(C6H4)-CH2-SH) and ADT can be completely deprotonated, forming dithiolates on AuNPs and AgNPs, while only one PADT thiol can be deprotonated even when PADTs are treated with concentrated NaOH or AgNO3. AuNP localized surface plasmon resonance (LSPR) measurement provides conclusive evidence that ADT in AuNP junctions primarily consisted of dithiolate monomers in which the two sulfides are either attached to the same AuNP, or cross-link two adjacent AuNPs as single-molecular spacers. However, ADT molecules most likely in the area surrounding the AuNP junction are monothiolate with their distal thiols either remaining intact or forming disulfide cross-links with neighboring adsorbed ADTs. The possibility for ADT to cross-link two AgNPs as single molecular linker is excluded on the basis of TEM measurements that showed ADT-induced AgNP disintegration. This work highlights the difference between organothiol interactions with AgNPs and AuNPs and should be of broad importance for plasmonic NP research given the popularity of PADTs in molecular electronics and SERS applications.

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A novel synthetic methodology has been developed for attaching fluorene derivatives, containing different types of electron donating and accepting groups at the 2 and 7 positions, to gold nanoparticles of different sizes by exploiting the affinity of the thiol functional group for gold. The distance between the dye and nanoparticles was varied by introducing two alkyl chains containing different number of carbon atoms at the 9 position on the fluorene ring system. The methodology that was developed gave enough scope for performing Radiative Decay Engineering (RDE) studies, in order to investigate the impact of gold nanoparticles on the singlet oxygen quantum yields of fluorene dyes that already exhibit high singlet oxygen quantum yields as well as high two photon absorption (2PA) cross-sections. The dialkylation of the fluorene derivatives was accomplished by reacting the dye with [alpha], [omega]-dibromoalkanes containing different number of carbon atoms in a biphasic reaction mixture containing toluene and aqueous sodium hydroxide solution in the presence of tetrabutylammonium bromide (TBAB) as a phase transfer catalyst. The bromine atom on the alkyl chains was converted to thioester by reaction with potassium thioacetate. This was followed by the hydrolysis of the thioester to form the thiol moiety. The compounds synthesized were characterized using 1H and 13C nuclear magnetic resonance (NMR) spectroscopy and elemental analysis. Functionalization of gold nanoparticles was attempted by bringing into contact a solution of the thiol compound in toluene and an aqueous gold nanoparticles solution. UV-vis absorbance spectroscopy was used to monitor the progress of the attachment. Surface Enhanced Raman Scattering (SERS) spectroscopy was used to probe the enhancement of Raman signal by the metallic nanoparticles.

Plasmonic photothermal therapy (PPTT) has a rising promise for treating different cancer cells such as lymphoma or stomach cancer. Technique development of PPTT using metallic nanoparticles is developed upon a modification of the irradiation therapy using two major changes: using a less harmful visible amber light (excluding blue light) and using gold-loaded biocompatible nanoparticles. Acrylate nanoparticles were loaded with desired types of gold nanoparticles at different sizes. The gold-loaded gold nanoparticles were conjugated to cancer cells. By selectively delivering the gold nanoparticles into cancer cells, irradiating a harmless amber visible light will achieve thermal ablation of the cancer cells. Based on imaging spectroscopy, flow cytometry, and cell viability assays, results showed reduction of gold-loaded viable cancer cells upon irradiating with amber visible light, no change in the number of cancer cells with irradiating with light only. On the other hand, DNA intercalation of a trinuclear gold(I), [Au(3-CH3,5-COOH)Pz]3 (Au3) is contrasted with the standard organic intercalators ethidium and ellipticine, as investigated computationally. Frontier molecular orbital energies of intercalators and DNA base pairs were determined and found that all intercalators are good electron acceptors with Au3 being the best electron acceptor having the lowest LUMO. DNA base pairs are better electron donors having the lowest HOMO values, and from the intercalators and base pairs' HOMO/LUMO energies, it is evident the intercalators will overlap with the HOMO of DNA stabilizing the intercalators. Interaction energies (kcal/mol) were obtained as a function of distance, r (angstroms). Results show that the theoretical treatment SDD-WB97XD outperforms SDD-LSDA in both adenine-thymine (AT) systems with ethidium and Au3 intercalators. In both guanine-cytosine (GC) and AT pairs, the Au3 has the lowest interaction energies among these common intercalators, suggesting a potential intercalating drug. Experimental DNA intercalation studies were attempted and methods of finding intercalation binding constants were established, showing gold complexes have better binding constants to DNA than common intercalators to support the computational results.