Dentre os ecossistemas neotropicais, a Mata Atlântica é considerada um dos mais importantes hotspots mundiais. O presente estudo foi conduzido na Reserva Florestal Morro Grande - RFMG (23°39\'-23°48\'S, 47°01\'-46°55\'W), reconhecida pelo seu alto valor para a conservação e está localizada na faixa da Mata Atlântica Ombrófila Densa Montana, Planalto Atlântico do Estado de São Paulo. Presentes na Mata Atlântica, os pequenos mamíferos não-voadores constituem o grupo de mamíferos mais diverso do bioma, e dados recentes relacionados à representatividade ecológica sugerem que os Orizomíneos mais típicos, comuns e abundantes das florestas costeiras e de planalto no estado de São Paulo são Euryoryzomys russatus e Sooretamys angouya. Estes dados ainda indicam que E. russatus e S. angouya, espécies classificadas respectivamente como \"em risco de extinção\" e \"deficiente de dados\" no Estado de São Paulo, respondem diferentemente ao processo de fragmentação, mas não existem informações suficientes disponíveis de história natural e autoecologia para o melhor entendimento destas respostas ao ambiente. O presente projeto avaliou a estrutura populacional, a área de vida, o uso do espaço, a dieta e seleção alimentar exibida por E. russatus e S. angouya na RFMG. O presente trabalho demonstrou que a espécie E. russatus apresenta uma abundância maior do que S. angouya na RFMG e que a temperatura e a disponibilidade de frutos influenciam a variação populacional de E. russatus, enquanto que, para S. angouya, a variação populacional independe dos fatores bióticos (frutos e artrópodes) ou abióticos (temperatura e precipitação) avaliados. Foi verificado uma estratificação vertical no uso do espaço para S. angouya e E. russatus, já que S. angouya apresentou uma locomoção escansorial enquanto E. russatus se apresentou estritamente terrestre. O estudo sugere que a disponibilidade de recursos, o período reprodutivo e o tamanho do indivíduo são os principais fatores que afetam o tamanho de área de vida, o uso do espaço e a locomoção apresentada pelas espécies. Os resultados obtidos pelo estudo da dieta, demonstram de forma conclusiva que E. russatus seleciona alimentos de origem animal, e que S. angouya utiliza muito pouco, ou não utiliza, fontes de origem animal, mas sim fontes vegetais ricas em proteínas e carboidratos, como os frutos. Este estudo possibilitou a compreensão de estratégias de vida adotadas por E. russatus e S. angouya, o que permitiu uma análise comparada da história natural a partir de um contexto evolutivo de organismos que compartilham a mesma escala geográfica e temporal, o que é algo inédito dentro da tribo e da subfamília. / The Atlantic Forest is considered one of the most important global hotspot among the neotropical ecosystems. This study was conducted at the Morro Grande Forest Reserve - MGFR (23°39\'-23°48\'S, 47°01\'-46°55\'W), located in the Dense Montana Atlantic forest, Atlantic Plateau of São Paulo, Brazil, which is known by its high conservation value. The non-flying small mammals are the most diverse group of mammals in the Atlantic forest and recent data suggest Euryoryzomys russatus and Sooretamys angouya as the most common and abundant species in coastal forests and highlands in the state of São Paulo. These data also indicate that E. russatus is classified as endangered and S. angouya as data deficient in the state of São Paulo red list, and these species respond differently to the fragmentation process. This project evaluated the population structure, the living area, the use of space, the diet, and food selection displayed by E. russatus and S. angouya in MGFR. This study demonstrated that the species E. russatus features greater abundance than S. angouya in the study area. Thus, the temperature and the availability of fruits influenced the variation of the population of E. russatus, whereas the population variation of S. angouya showed no dependence of assessed biotic (fruits and arthropods) or abiotic factors (temperature and precipitation). Vertical stratification was observed in the use of space between S. angouya and E. russatus, once S. angouya presented escansorial locomotion and E. russatus was strictly terrestrial. The study suggests that the availability of resources, the reproductive period and the individual overall size are the main factors that affect the home range size, the use of space and mobility presented by the species. The results obtained by the study of diet demonstrate conclusively that E. russatus selects animal origin and S. angouya uses very little or does not use animal food resources, choosing plant sources rich in protein and carbohydrates, such as fruits. This study brought a better understanding of the life strategies adopted by E. russatus and S. angouya, which allowed the comparison of natural history of organisms that share the same spatial and temporal scale under an evolutionary perspective, which is a completely new approach within the tribe and subfamily.

Mes travaux de thèse portent sur l’application de l’imagerie fUS (functional ultrasound imaging) à l’imagerie cérébrale préclinique chez le petit animal. Le but était de transformer cette technique d’imagerie cérébrale récente en un véritable outil de quantification de l’état cérébral. Les objectifs principaux ont été de démontrer la faisabilité de l’imagerie fUS chez le petit animal non anesthésié ainsi que de passer du modèle rat au modèle souris - modèle de choix en imagerie préclinique en neurosciences - de surcroît de façon non invasive. J’ai tout d’abord mis au point une nouvelle séquence d’imagerie ultrasonore ultrarapide (Multiplane Wave imaging), permettant d’améliorer le rapport signal-à-bruit des images grâce à l’augmentation virtuelle de l’amplitude du signal émis, sans diminuer la cadence ultrarapide d’acquisition. Dans un deuxième temps j’ai démontré la possibilité d’imager le cerveau de la souris et du jeune rat anesthésiés par échographie Doppler ultrarapide, de manière transcrânienne et complètement non invasive, sans chirurgie ni injection d’agents de contraste. J’ai ensuite mis au point un montage expérimental, une séquence ultrasonore et un protocole expérimental permettant de réaliser de l’imagerie fUS de manière minimalement invasive chez des souris éveillées et libres de leurs mouvements. Enfin, j’ai démontré la possibilité d’utiliser le fUS pour étudier la connectivité fonctionnelle du cerveau au repos (sans stimulus) chez des souris éveillées ou sédatées. L’imagerie fUS et la combinaison « modèle souris » + « minimalement invasif » + « animal éveillé » + « connectivité fonctionnelle » constituent un outil précieux pour la communauté des neuroscientifiques travaillant sur des modèles animaux pathologiques ou de nouvelles molécules pharmacologiques / My work focuses on the application of fUS (functional ultrasound) imaging to preclinical brain imaging in small animals. The goal of my thesis was to turn this recent vascular brain imaging technique into a quantifying tool for cerebral state. The main objectives were to demonstrate the feasibility of fUS imaging in the non-anaesthetized small rodents and to move from rat model imaging to mouse model imaging –most used model for preclinical studies in neuroscience-, while developing the least invasive imaging protocols. First, I have developed a new ultrafast ultrasonic imaging sequence (Multiplane Wave imaging), improving the image signal-to-noise ratio by virtually increasing emitted signal amplitude, without reducing the ultrafast framerate. Then, I have demonstrated the possibility to use ultrafast Doppler ultrasound imaging to image both the mouse brain and the young rat brain, non-invasively and through the intact skull, without surgery or contrast agents injection. Next, I have developed an experimental setup, an ultrasound sequence and an experimental protocol to perform minimally invasive fUS imaging in awake and freely-moving mice. Finally, I have demonstrated the possibility to use fUS imaging to study the functional connectivity of the brain in a resting state in awake or sedated mice, still in a transcranial and minimally invasive way. fUS imaging and the combination of "mouse model" + "minimally invasive" + "awake animal" + "functional connectivity" represent a very promising tool for the neuroscientist community working on pathological animal models or new pharmacological molecules

Poison operations are a widely used technique for rodent control in the indigenous forests of New Zealand. This study examined the bait-take and rat monitoring data obtained for continuous poison operations at Boundary Stream Mainland Island (BSMI), Hawke’s Bay, between 1996 and 2007. Since the beginning of the Mainland Island project at BSMI in 1996, 800 ha of indigenous forest have been treated with an ‘Integrated Pest Management’ approach, in which rodents (primarily ship rats) have been targeted by consecutive ground poison operations. The aim of the intensive pest control was to allow the ecosystem to recover and provide a safe environment for threatened native bird species to recover or be re-introduced. Another important aim of this pest control is to provide experience and expert knowledge in management techniques especially applicable to the protection of indigenous habitat on the New Zealand mainland. This research study had two main aims: to identify spatial patterns of the rodent population at BSMI and to determine the efficacy of the different rodenticides applied for their control. The distribution of the rodent population was investigated by spatial analysis of bait-take across the reserve and through time. Visualisation of high and low bait-take areas revealed that there was a noticeable reinvasion from adjacent unmanaged native forests, but not markedly from exotic forest or pasture. Reinvasion from small and isolated adjacent forests ceased to be noticeable consistently after approximately four years of the poison operation, while a large scenic native reserve, as well as a narrow part of the treatment area surrounded by many native bush patches, were continuously affected by reinvasion through the entire project time. Bait-take was visibly higher after the bait had either been removed, or left in the field unserviced, over winter. No consistent areas of no bait-take were identified. Further statistical analysis of bait-take data revealed that bait-take was higher in bait stations within 150 m of the treatment edge than interior bait stations. Bait-take in broadleaf/tawa/podocarp forest was significantly higher than in kamahi/kanuka/rewarewa, beech and cloud-cap forest. The second aim of the study was to determine the efficacy of the various bait types with different active ingredients used during the operation. Rat monitoring data, namely rat tracking indices (RTI) obtained from tracking tunnels, were statistically modelled using Generalised Linear Models. Diphacinone cereal pellets (Pestoff® 50D, 0.05g/kg diphacinone) obtained the lowest RTI, followed by pindone cereal pellets (Pindone Pellets®, 0.5g/kg pindone), brodifacoum cereal pellets (Pestoff® 20p and Talon®, 0.02 g/kg brodifacoum), coumatetralyl paste (Racumin®, 0.375 g/kg) and diphacinone bait blocks (Ditrac®, 0.05 g/kg). Cereal pellet baits worked better than any other bait type used at this location. Season had no statistically significant effect on either RTI or bait-take estimates. The overall goal of the poison operation to decrease rat numbers, and to maintain low levels, has been met. However, the results of this study suggest that baiting needs to be done continuously and over the entire treatment area. Edge bait stations – particularly next to adjacent native forests – should be prioritised to target reinvading rodents. Poisons presented in cereal pellet baits should be preferred to other bait types. Both pindone and brodifacoum showed very good results, as well as diphacinone in cereal pellet baits.

Odour plays an important role in many predator/prey interactions. In the northern hemisphere, many mammalian prey species have been shown to respond to predator odours. It is also widely assumed that mammalian predators utilise odours to locate their prey. This thesis explores the importance of odour in Australian mammalian predator/prey interactions. Responses of native Australian species to the faecal odour of two predators; the native tiger quoll Dasyurus maculatus and the introduced red fox Vulpes vulpes, were evaluated through live-trapping and focussed behavioural studies of captive animals. Tiger quoll responses to prey olfactory cues were investigated in a captive experiment. Native rodents (bush rats Rattus fuscipes, swamp rats R. lutreolus and eastern chestnut mice Pseudomys gracilicaudatus) equally avoided traps scented with either quoll or fox faeces, and in captive experiments, bush rats and swamp rats reduced their average speed in response to both predator odours. Of the marsupial species, northern brown bandicoots Isoodon macrourus and common brushtail possums Trichosurus vulpecula were captured more frequently in quoll-scented traps than unscented traps or foxscented traps, while captures of brown antechinus Antechinus stuarttii, long-nosed bandicoots Perameles nasuta and southern brown bandicoot I. obesulus were unaffected by the either predator odour. In captive experiments, brown antechinus, long-nosed and northern brown bandicoots decreased their foraging in response to both predator odours, and spent less time in areas scented with quoll faeces. Tiger quolls didn't appear to detect odour sources from a distance of >65 cm, but they did follow scent trails and spent more time in areas scented with the urine and faeces of potential prey. Chemical analysis revealed no common components in fox and quoll odour which prey species could be responding to. Therefore, these native species have evolved to respond to fox odour since foxes were introduced to Australia 130 years ago. The stronger response of native rodents to fox odour may be a legacy of their co-evolution with canid predators prior to entering Australia. A better understanding of how odour is utilised in Australian predator/prey interactions may lead to a greater ability to protect Australia's unique mammalian fauna from introduced predators.

This study was conducted in burned and harvested areas of Catalonia. It was evaluated the effect of the granivorous in predispersive fruit removal of Smilax aspera and Quercus coccifera and postdispersive seed removal. Nuts removal by rodents was nil in the burned area while for S. aspera only occurred in 2008. The minimum distance to any unburned margin and the distance to the fire perimeter explained patterns of seed removal for rodents and ants, respectively. Seed removal was also lower at unlogged sites vs. logged ones but it was only significative for ants. Rodents removed more seeds under piles of branches because logging while ants did so in areas of bare soil. It should consider the impact of granivorous in the management of burned habitats. / Este estudio fue desarrollado en áreas quemadas y taladas de Cataluña. Se evaluó el efecto de los granívoros en la remoción predispersiva de frutos de Smilax aspera y Quercus coccifera así como la remoción postdispersiva de semillas. La remoción de Quercus por parte de roedores fue nula en el área quemada mientras que para S. aspera solo ocurrió en el 2008. La distancia minima a cualquier margen no quemado y la distancia al perímetro del incendio explicaron los patrones de remoción de semillas para roedores y hormigas, respectivamente. La remoción de semillas también fue menor en las estaciones taladas vs. las no taladas, pero solo de forma significativa para hormigas. Los roedores removieron más semillas bajo amontonamientos de ramas producto de la gestión forestal mientras que las hormigas lo hicieron en áreas de suelo desnudo. Se debería contemplar el efecto de los granívoros en la gestión de los hábitats quemados.

No description available.

Depuis les années 90, les études réalisées au Canada ont permis d’identifier de nouvelles zones endémiques de l’agent de la maladie de Lyme, Borrelia burgdorferi, ou de sa tique vectrice, Ixodes scapularis. Ces régions représentent des zones privilégiées pour étudier le cycle de transmission dans son contexte environnemental. L’objectif principal de ce projet est d’étudier les relations spirochètes – tiques - hôtes et les facteurs environnementaux impliqués dans le cycle de transmission à partir des données du vecteur et de l’agent pathogène recueilli dans le Sud-Ouest du Québec de 2007 à 2008. Tout d’abord sera décrite la saisonnalité des tiques et des associations entre le vecteur et les hôtes rongeurs capturés. En effet, l’identification de la saisonnalité spécifique à chaque stade de la tique I. scapularis permet d’établir quels seront les mois propices pour effectuer les futures collectes de tiques. La saisonnalité synchrone des tiques immatures en quête peut également être un indicateur de la nature ou des souches de B. burgdorferi retrouvées. L’association des tiques immatures à différentes espèces ou à différentes classes d’hôtes (c.-à-d. âge, sexe, statut reproductif) a également été explorée. Nos résultats montrent que les souris du genre Peromyscus, principalement les mâles adultes, contribuent significativement à la survie et au développement du complexe I. scapularis - B. burgdorferi. Les tamias et les écureuils contribuent aussi à la survie et au développement des populations de la tique I. scapularis. Ensuite les associations entre le vecteur et les hôtes cervidés ont été examinées en tenant compte des facteurs environnementaux associés à leur niveau d’infestation. Ceci a permis d’évaluer l’utilisation des cerfs à titre de sentinelles pour le vecteur et les agents pathogènes. D’après nos résultats, bien qu’ils soient des sentinelles efficaces pour détecter Anaplasma phagocytophilum, les cerfs semblent des sentinelles inefficaces pour détecter les zones d’établissement du complexe I. scapularis-B. burgdorferi. Enfin, une analyse de l’impact de la diversité des hôtes et de l’habitat sur l’abondance de la tique I. scapularis et la prévalence de B. burgdorferi a été effectuée et ce, en tenant compte d’autres facteurs environnementaux. Ces analyses ont permis de déterminer les facteurs critiques pour l’établissement du complexe I. scapularis – B. burgdorferi et d’explorer la contribution relative de diverses espèces d’hôtes. D’après nos études, la diversité de la communauté d’hôte et la diversité de l’habitat influencent le complexe I. scapularis - B. burgdorferi. De plus, le climat (la température et les précipitations) joue un rôle significatif dans l’établissement, la survie et le développement des populations d’I. scapularis. Ce projet de recherche a permis d’explorer et d’identifier divers facteurs environnementaux biotiques et abiotiques influençant l’établissement du complexe I. scapularis - B. burgdorferi dans le Sud-Ouest du Québec. Ceux-ci pourraient être utilisés à titre d’indicateurs environnementaux du risque de la maladie de Lyme au Québec et possiblement ailleurs au Canada. / Since the 90s in Canada, studies have identified new endemic areas for the agent of Lyme disease, Borrelia burgdorferi and the tick vector, Ixodes scapularis. These newly endemic areas for complex I. scapularis - B. burgdorferi are prime areas to study the transmission cycle in its environmental context. The main objective of this project is to study the spirochete-tick-host relationships and environmental factors involved in the transmission cycle from the data of the vector and the pathogen collected in southwestern Quebec, 2007 to 2008. First, a description of the seasonality of ticks and associations between the vector and captured rodent hosts was performed. The identification of specific seasonality at each stage of the tick I. scapularis establishes months conducive to make the future collections of ticks. Synchronous seasonality of questing immature ticks may also be an indicator of the nature or strain of B. burgdorferi found. In addition, the association of immature ticks in different species or different classes of hosts (i.e. age, sex, reproductive status) was explored. The Peromyscus mice and adult males in particular contributed significantly to the survival and development of complex I. scapularis-B. burgdorferi. Chipmunks and squirrels also contributed to the survival and development of I. scapularis populations. Second, the associations between vector and examined deer was described taking into account the environmental factors associated with the level of infestation and the use of deer as sentinels for the vector and the pathogen was evaluated. According to our results, the deer are effective sentinels to detect Anaplasma phagocytophilum, but seem ineffective or imprecise to detect endemic areas for complex I. scapularis-B. burgdorferi. Finally, an analysis of the impact of the host diversity and habitat on the abundance of I. scapularis and prevalence of B. burgdorferi considering other environmental factors was performed. These analyzes were used to determine the critical factors in the establishment of complex I. scapularis-B. burgorferi and explore the relative contribution of various host species. According to our studies, the diversity of the host community and habitat influences the complex I. scapularis-B. burgdorferi. On the other hand, the climate (temperature and precipitation) plays a significant role in the establishment, survival and development of the I. scapularis populations. This study allowed us to explore and identify various biotic and abiotic environmental factors influencing the establishment of complex I. scapularis-B. burgdorferi in southwestern Quebec. These environmental factors could be used as environmental indicators of the risk of Lyme disease in Quebec and possibly elsewhere in Canada.

Odour plays an important role in many predator/prey interactions. In the northern hemisphere, many mammalian prey species have been shown to respond to predator odours. It is also widely assumed that mammalian predators utilise odours to locate their prey. This thesis explores the importance of odour in Australian mammalian predator/prey interactions. Responses of native Australian species to the faecal odour of two predators; the native tiger quoll Dasyurus maculatus and the introduced red fox Vulpes vulpes, were evaluated through live-trapping and focussed behavioural studies of captive animals. Tiger quoll responses to prey olfactory cues were investigated in a captive experiment. Native rodents (bush rats Rattus fuscipes, swamp rats R. lutreolus and eastern chestnut mice Pseudomys gracilicaudatus) equally avoided traps scented with either quoll or fox faeces, and in captive experiments, bush rats and swamp rats reduced their average speed in response to both predator odours. Of the marsupial species, northern brown bandicoots Isoodon macrourus and common brushtail possums Trichosurus vulpecula were captured more frequently in quoll-scented traps than unscented traps or foxscented traps, while captures of brown antechinus Antechinus stuarttii, long-nosed bandicoots Perameles nasuta and southern brown bandicoot I. obesulus were unaffected by the either predator odour. In captive experiments, brown antechinus, long-nosed and northern brown bandicoots decreased their foraging in response to both predator odours, and spent less time in areas scented with quoll faeces. Tiger quolls didn't appear to detect odour sources from a distance of >65 cm, but they did follow scent trails and spent more time in areas scented with the urine and faeces of potential prey. Chemical analysis revealed no common components in fox and quoll odour which prey species could be responding to. Therefore, these native species have evolved to respond to fox odour since foxes were introduced to Australia 130 years ago. The stronger response of native rodents to fox odour may be a legacy of their co-evolution with canid predators prior to entering Australia. A better understanding of how odour is utilised in Australian predator/prey interactions may lead to a greater ability to protect Australia's unique mammalian fauna from introduced predators.

Odour plays an important role in many predator/prey interactions. In the northern hemisphere, many mammalian prey species have been shown to respond to predator odours. It is also widely assumed that mammalian predators utilise odours to locate their prey. This thesis explores the importance of odour in Australian mammalian predator/prey interactions. Responses of native Australian species to the faecal odour of two predators; the native tiger quoll Dasyurus maculatus and the introduced red fox Vulpes vulpes, were evaluated through live-trapping and focussed behavioural studies of captive animals. Tiger quoll responses to prey olfactory cues were investigated in a captive experiment. Native rodents (bush rats Rattus fuscipes, swamp rats R. lutreolus and eastern chestnut mice Pseudomys gracilicaudatus) equally avoided traps scented with either quoll or fox faeces, and in captive experiments, bush rats and swamp rats reduced their average speed in response to both predator odours. Of the marsupial species, northern brown bandicoots Isoodon macrourus and common brushtail possums Trichosurus vulpecula were captured more frequently in quoll-scented traps than unscented traps or foxscented traps, while captures of brown antechinus Antechinus stuarttii, long-nosed bandicoots Perameles nasuta and southern brown bandicoot I. obesulus were unaffected by the either predator odour. In captive experiments, brown antechinus, long-nosed and northern brown bandicoots decreased their foraging in response to both predator odours, and spent less time in areas scented with quoll faeces. Tiger quolls didn't appear to detect odour sources from a distance of >65 cm, but they did follow scent trails and spent more time in areas scented with the urine and faeces of potential prey. Chemical analysis revealed no common components in fox and quoll odour which prey species could be responding to. Therefore, these native species have evolved to respond to fox odour since foxes were introduced to Australia 130 years ago. The stronger response of native rodents to fox odour may be a legacy of their co-evolution with canid predators prior to entering Australia. A better understanding of how odour is utilised in Australian predator/prey interactions may lead to a greater ability to protect Australia's unique mammalian fauna from introduced predators.

Odour plays an important role in many predator/prey interactions. In the northern hemisphere, many mammalian prey species have been shown to respond to predator odours. It is also widely assumed that mammalian predators utilise odours to locate their prey. This thesis explores the importance of odour in Australian mammalian predator/prey interactions. Responses of native Australian species to the faecal odour of two predators; the native tiger quoll Dasyurus maculatus and the introduced red fox Vulpes vulpes, were evaluated through live-trapping and focussed behavioural studies of captive animals. Tiger quoll responses to prey olfactory cues were investigated in a captive experiment. Native rodents (bush rats Rattus fuscipes, swamp rats R. lutreolus and eastern chestnut mice Pseudomys gracilicaudatus) equally avoided traps scented with either quoll or fox faeces, and in captive experiments, bush rats and swamp rats reduced their average speed in response to both predator odours. Of the marsupial species, northern brown bandicoots Isoodon macrourus and common brushtail possums Trichosurus vulpecula were captured more frequently in quoll-scented traps than unscented traps or foxscented traps, while captures of brown antechinus Antechinus stuarttii, long-nosed bandicoots Perameles nasuta and southern brown bandicoot I. obesulus were unaffected by the either predator odour. In captive experiments, brown antechinus, long-nosed and northern brown bandicoots decreased their foraging in response to both predator odours, and spent less time in areas scented with quoll faeces. Tiger quolls didn't appear to detect odour sources from a distance of >65 cm, but they did follow scent trails and spent more time in areas scented with the urine and faeces of potential prey. Chemical analysis revealed no common components in fox and quoll odour which prey species could be responding to. Therefore, these native species have evolved to respond to fox odour since foxes were introduced to Australia 130 years ago. The stronger response of native rodents to fox odour may be a legacy of their co-evolution with canid predators prior to entering Australia. A better understanding of how odour is utilised in Australian predator/prey interactions may lead to a greater ability to protect Australia's unique mammalian fauna from introduced predators.