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91	Ground - dwelling arthropods in a biosphere reserve: patterns of diversity and conservation implications Schoeman, Colin Stefan 17 May 2019 (has links) PhD (Zoology) / Department of Zoology / Invertebrate diversity is often neglected in conservation planning initiatives. There are also very few large-scale diversity studies in Africa, with most studies being restricted to single properties and spatial extents that are on average not much larger than 30 km2. Here, we provide a comparative regional assessment, two orders of magnitude larger than usual (30 000 km2), of epigeal spider, beetle and millipede diversity in the Vhembe Biosphere Reserve – the largest biosphere reserve in South Africa, and one of the largest in Africa. Firstly we aim to provide an evaluation of the ability of a range of broad and fine scale predictors to explain the variation in the diversity of these taxa. Secondly, we measured cross-taxon congruence between our selected invertebrate taxa and woody vegetation, and within-taxon surrogate efficiency. Thirdly we evaluated performance of existing and proposed zonations in representing regional invertebrate species diversity. Finally, to aid in the development of species conservation profiles for lesser known taxa, annotated check lists are provided for two neglected but dominant epigeal beetle families, Tenebrionidae and Carabidae. Vegetation units explained the largest and most significant component of beetle and spider diversity (richness and complementarity of alpha and beta diversity). Elevation and mean annual temperature played a lesser but still significant role. Overall, woody vegetation was a poor surrogate, especially for millipedes which have several localized endemics. The use of higher taxa (genus and tribe in particular) shows the greatest potential for conservation planning. The current zonation of the Vhembe Biosphere Reserve performed significantly better than expected in representing invertebrate diversity across the region. The reality though is that conservation decision-making is largely informed by knowledge on the distribution of rare, localized or endangered species, for which detailed species inventories are 10 required. Though a coarse filter approach is recommended, the augmentation of species level data provides an extra filter, and contributes to our knowledge of what taxa are in urgent need of protection. Targeting rare and endangered species in transition zones and developing conservation assessments and plans for these in relatively small areas would compliment existing conservation initiatives in the VBR. Annotated check lists ofTenebrionidae of the Vhembe Biosphere suggest that the family is particularly speciose, the assemblage being comprised of an east African and a Kalahari element which contributes significantly to local endemicity, and yielded three new species, one of which is described in the revision to the genus Anaxius, a group largely restricted to the mountainous areas of Limpopo Province. Carabidae were also found to be speciose, with the assemblage comprised of a large proportion of stenotypic species. There is support for the use of vegetation types in conservation plans but these should be augmented with species level conservation initiatives that target particularly transition and buffer zones. / NRF Invertebrate Diversity Epigeal Spider Beetle Phylum Arthropod Biosphere conservation Conservation 595.0968257 Invertebrates -- South Africa -- Limpopo Arthropoda -- South Africa -- Limpopo Arthropoda -- Environmental aspects Insects -- South Africa -- Limpopo
92	Subletální efekty insekticidů neonikotinoidů na migrační a predační potenciál pavouků / Sublethal effects of the insecticides neonicotinoids on spider's migration and predatory abilities Přibáňová, Gabriela January 2019 (has links) This research deals with impacts of pesticide substances on spider populations. In this case pesticides of the neonicotinoids classes were tested. Specific neonicotinoids were applied to different of spiders which were collected in various localities and at some stage of development - nymph, adult or subadult individuals. The diploma thesis analyzes and the documents the effects of neonicotinoids to spiders. The results show that some pesticides can have a significant negative effect to locomotion, predation, ballooning, drop or to spiders mortality. Keywords: spider, arthropod, pesticides, insecticides, neonicotinoids, sublethal effects, mortality, EthoVision XT, locomotion, drop, ballooning, predation, Philodromus, Oedothorax, Pardosa, Xerolycosa, Phylloneta
93	Safety and Stability of Samples Stored on Filter Paper for Molecular Arbovirus Diagnosis Bringeland, Emelie January 2021 (has links) Expanding urbanization, climate change, and population growth contribute to increased transmission and spread of arthropod-borne viruses (arboviruses), many of which cause severe disease in humans. Pathogenic arboviruses include dengue, Zika, tick-borne encephalitis, and sindbis viruses, which together threaten more than half the global population. Thus, there is a constant need for safe, specific, and sensitive molecular tests to identify early-stage infections for accurate diagnosis and molecular epidemiological data for disease prevention and control. The study tested the biosafety of using FTA™ cards when working with pathogenic arboviruses by conducting an infectivity assay using sindbis virus. Conditions for RNA extraction and storage of arboviruses on FTA were analyzed by measuring viral RNA (vRNA) stability using a SYBR-Green, Pan-Flavi RT-qPCR method composed of degenerate primers able to detect a variety of flaviviruses. Data from a Pan-Flavi RT-qPCR study comprising of 222 clinical blood and serum samples collected from a 2018 dengue virus outbreak in Hanoi (Vietnam) was analyzed to establish applicability of FTA for molecular epidemiology and diagnosis. Results showed that sindbis virus infectivity was inhibited by FTA-adsorption. FTA-adsorbed arboviruses were extracted with the highest yield using Trizol extraction and were preserved at storage at 4-20ºC for up to 30 days. The results showed that clinical blood samples acquired higher yields of vRNA for molecular testing than serum samples and that it may be possible to perform sequencing for genomic analysis. The study suggests that FTA cards may facilitate the storage and transportation of adsorbed arboviruses for downstream molecular epidemiological and diagnostic tests. Arthropod-borne viruses (arboviruses) alphaviruses flaviviruses dengue virus (DENV) Japanese encephalitis virus (JEV) Tick-borne encephalitis virus (TBEV) Usutu virus (USUV) Zika virus (ZIKV) Biosafety Vietnam Microbiology in the medical area
94	COLOR PRODUCTION MECHANISMS IN SPIDERS AND THEIR BIOMIMICRY POTENTIAL Hsiung, Bor-Kai January 2017 (has links) No description available. Animal Sciences Animals Biology Biophysics Evolution and Development Experiments Morphology Optics spider color pigment photonic structure iridescence arachnid tarantula peacock spider structural color Raman spectroscopy melanin carotenoid ommochrome pterin diffraction grating interference multilayer melanosome arthropod silk
95	A study of type-3 copper proteins from arthropods Baird, Sharon January 2007 (has links) Arthropod hemocyanin and phenoloxidase are members of a group of proteins called the Type-3 copper oxygen-binding proteins, both possessing a highly conserved oxygen-binding site containing two copper atoms each coordinated by three histidine residues (Decker and Tuczek, 2000). Despite similarities in their active site, these proteins have very different physiological functions. Phenoloxidase possesses both tyrosinase and o-diphenoloxidase activity, and is predominantly involved in reactions which protect insects from infection (Kopàcek et al., 1995). Hemocyanin is a large multi-subunit protein with a primary function as a respiratory protein, reversibly binding and transporting molecular O2 (Decker and Rimke, 1998; Decker and Tuczek, 2000). Recently, it has been demonstrated in vitro that arthropod hemocyanin possesses an inducible phenoloxidase activity when incubated with denaturants, detergents, phospholipids or proteolytic enzymes. This activity appears to be restricted to only a few subunit types, and it has been hypothesised that it may be accompanied by conformational change which opens the active site increasing access for larger phenolic substrates (Decker and Jaenicke, 2004; Decker et al., 2001; Decker and Tuczek, 2000). This possibly suggests a dual role of hemocyanin in arthropods. The presented thesis deals with two distinct aims. The first was to isolate and sequence a phenoloxidase gene from the insect Spodoptera littoralis (Egyptian Cottonleaf Worm). Despite efforts, progress was hindered by a number of experimental problems which are outlined within the relevant chapters. The second aim was to characterise the mode of SDS induced phenoloxidase activity in arthropod hemocyanin from the ancient chelicerates Limulus polyphemus (horseshoe crab) and Eurypelma californicum (tarantula) and the more modern chelicerate Pandinus imperator (scorpion), using a number of biophysical techniques. The results indicated that the SDS induced phenoloxidase activity is associated with localised tertiary and secondary conformational changes in hemocyanin, most likely in the vicinity of the dicopper centre, thus enhancing access for larger phenolic substrates. Experiments indicate that copper remains associated with the protein during these structural changes; however the nature of the association is unclear. SDS concentrations approximating the CMC appeared critical in causing the necessary structural changes required for a significant increase in the detectable phenoloxidase activity to be exhibited. 572
96	Development of fungal biological control of four agriculturally important pests, Sitophilus oryzae, Trialeurodes vaporariorum, Planococcus ficus and Eldana saccharina, in South Africa. Chambers, Craig Brian. January 2005 (has links) The use of entomopathogenic fungi to control agriculturally important pests, both in greenhouses and in the field, has been demonstrated by various authors for a number of years. This has been brought about by the development of resistance in certain pest species to chemical applications and a growing public awareness of the safety implications of residual insecticides. Several entomopathogenic fungi were tested against four insect pests found in the Republic of South Africa (RSA), the greenhouse whitefly, Trialeurodes vaporariorum, the rice weevil, Sitophilus oryzae, the grapevine mealybug, Planococcusficus and the sugarcane stem borer, Eldana saccharina. Further concentration, temperature and humidity studies were conducted with selected isolates on the rice weevil, S. oryzae. Sitophilus oryzae is considered one ofthe most important pests of stored grain. Several fungal isolates were tested against the rice weevil, four of which, B1, PPRI 6690, PPRI 6864 and PPRI 7067, were selected for further testing based on the mortality results over a 21 d period. Varying conidial concentrations were applied and at high doses of 1x10 -6 conidia ml -1 with mortality rates of to 84% achieved. LT 50 values ranged from 6 - 68d. Increased spore concentration resulted in an increase in overall mortality. Temperature and humidity was found to affect the infection potential of the four isolates tested. Four temperatures ranging from 15 - 30°C were tested. The highest mortality rates were obtained at 25°C where mortality ranged from 46 - 65% in 14d. Mortality rates decreased with decreasing temperature, and no mortality was recorded at 30°C. Temperature was found to significantly alter the LT 50 values, increasing the LT 50 with decreasing temperatures. Decreasing the humidity resulted in an increased LT 50 and a reduction in the overall mortality rates. The mortality of S. oryzae ranged according to the RH and isolate. Isolates Bland PPRI 6690 resulted in the highest mortalities of 80 and 83% at 92.5% RH, with LT 50's of 6.3d and 6.4d, respectively. Several entomopathogenic fungi were tested against T vaporariorum, P. ficus and E. saccharina, three key pests of South African crops. Nine fungal isolates were tested against the greenhouse whitefly, T vaporariorum, with mortalities ranging from 26.7 - 74.7% over 14d. Beauveria bassiana Isolates Bl and PPRl 6690 produced the highest mortality rates and were recommended for further pathogenicity testing against T. vaporariorum. Planococcus ficus is a common pest ofvineyards in the Western Cape Province, South Africa. Nine entomopathogenic fungi were screened against P.ficus, only two of which produced mortality. Eldana saccharina is a stalk borer, which infests sugarcane in large areas of Southern Africa. Five isolates were tested against second and third instar larvae, three of which, B1, PPRl 6864 and PPRl 6690 resulted in mortalities. Mean percentage mortality was low for all three isolates. From the study it was evident that two of the isolates tested, Bland PPRI 6690 (B. bassiana), showed potential against three of the four pests, and two isolates of Lecanicillium lecanii caused mortality in P. ficus. Further research and understanding of the effect of environmental conditions, spore concentration and epizootic potential would result in the further development of these isolates as future biological control agents. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2005. Entomopathogenic fungi. Biological pest control agents. Theses--Plant pathology.
97	Design, expression and purification of virus-like particles derived from metagenomic studies : Virus-like Particles (VLP) of novel Partitiviridae species, Hubei.PLV 11, and novel Soutern pygmy squid flavilike virus were designed, expressed using the bac-to-bac expression system and then pruified using various methods Ayranci, Diyar January 2021 (has links) Viruses are entities which are made of a few genes and are reliant on obligate parasitism to propagate. Due to the obligate connection to their hosts, virus evolution is constrained to the type of host. Viruses however do transmit to evolutionary distinct hosts; in these cases, the phylogenetic relationship of the hosts usually are close. In some instances, RNA-viruses have made host jumps between evolutionary distant hosts, such as the host jump from invertebrates to vertebrates, and fungi to arthropod. Partitiviruses are double stranded RNA viruses which mainly infect fungi and plants. The defining characteristic of these double stranded RNA viruses are the double layered capsids which are formed by a single open reading frame (ORF). The capsid proteins form icosahedral virus particles which are in the magnitude of 30-40 nm. Metagenomic studies have discovered partitiviruses originating from an insect in the Odanata family, a finding which contradicts the fungal host specificity of partitiviruses. The finding of the Hubei.PLV 11 thus implies the existence of a partitiviruses containing structural elements in their capsids which could be involved in the infection of arthropods. Thus, this virus could be used as a model for a structural comparison with its fungi infecting relatives with hopes to identify common viral structural factors necessary for the infection of arthropods. For this purpose, the Hubei.PLV ORF was cloned and then transfected into insect Spodoptera frugiperda (Sf-9) cells using a baculovirus expression system, “bac-to-bac” expression system. The FLAG-tagged capsid proteins were expressed by the Sf-9 cells to be approximately 60 kDa. After ultra-centrifugation in a sucrose gradient, some spontaneous assembly into the expected ~40 nm icosahedral virus-like particles were observed using low resolution scanning electron microscopy. The observed particles were also confirmed by a dynamic light scattering experiment (DLS) and a higher resolution cryo-EM microscope. Thus, the bac-to-bac expression system can be used to produce VLPs from this genus of viruses, and this metagenomically derived virus genome. However, for future success in defining a high-resolution model of this virus, it is recommended that the Sf-9 culture volume is sufficiently high for enough particle production which is necessary for a high-resolution map. The other virus, the Southern pygmy squid Flavilike virus (SpSFV) has been suggested to be the oldest relative of the land based flaviviruses. The SpSFV was found to be the most divergent of the flaviviruses, and to infect invertebrates. Solving for the structure of the SpSFV and comparing it to vertebrate infecting flaviviruses could therefore lead to the identification of factors necessary for the adaptation to vertebrates and thus the humoral immunity by flaviviruses. The soluble E-protein was expressed using the bac-to-bac expression system. The protein was indicated to be multiglycosylated and approximately 50 kDa which is in line with other strains in the genus. Affinity chromatography did not elute this protein, likely due to the His-tag not being spatially available. Cation exchange could elute some protein, but not much from the small ~30 mL culture. To conclude, VLP assembly was confirmed by the Hubei.PLV, thus, solving for the structure is a distinct possibility when a larger Sf-9 culture is used to produce the VLPs. For the SpSFV soluble E-protein, the protein is secreted into the supernatant of the Sf-9 cultures, making purification a possibility. For this, a large Sf-9 culture can be used to produce this protein and then purify it with a cat-ion exchange chromatography. Virus virus-like particles VLP. Western Blot SDS-PAGE Chromatography partitivrus partitiviridae flaviviridae flavivirus Hubei partitilike virus Southern Pygmy Squid flavilike virus protein purification protein characterization PCR Cloning metagenomic strucutral biology cryo-em bac-to-bac expression system vaccines arbovirus arthropod-borne virus Immunology Immunologi Structural Biology Strukturbiologi Biophysics Biofysik Microbiology Mikrobiologi Other Biological Topics Annan biologi
98	Birds, bats and arthropods in tropical agroforestry landscapes: Functional diversity, multitrophic interactions and crop yield Maas, Bea 20 November 2013 (has links) No description available. 630 birds bats arthropods multitrophic interactions agroforestry tropical landscape forest margin landscape functional diversity crop yield exclosure experiments experimental exclusion arthropod suppression avian predation ecosystem services mist netting point counts artificial plasticine caterpillar dummy experiment biological control monitoring mapping Lemon-bellied White-eye Grosbeak Starling Zosterops chloris Scissiostrum dubium Theobroma cacao cacao agroforestry cacao diseases cacao harvest cacao pests flying vertebrates aerial insectivores volant vertebrates logging breeding colony flower herbivory mesopredator release predatory insects ants spiders aphids Lepidoptera Coleoptera Lepidopteran larvae sustainable agriculture sustainable agroforestry management implications management recommendations applied managament extensive land use management landscape management conservation biodiversity-friendly dbh distance to forest forest proximity habitat conversion herbivory Indonesia insectivorous bats insectivorous birds invertebrates Central Sulawesi Napu valley leaf gleaning leaf herbivory pests insects phytophagous insects plant productivity remnant forest trees shade tree managament South-east Asia Paleotropics tropical landscape tree height landscape gradient local shade management Cacao Pod Borer Cherelle Wilt fruit abortion Helopeltis sulawesi deforestation habitat fragmentation land use intensification forest margin species critical decline predation experiment species-specific functions Southeast Asia biodiversity conservation mesopredators food security human welfare human well-being poverty alleviation poverty reduction smallholder cacao smallholder plantation cacao farmers sustainable cacao management landscape perspective landscape scale large scale field experiment long term field experiment human wellbeing economic importance economic value valuation ecosystem services landscape matrix yield quality yield quantity fruit productivity species identity species diversity species richness ecosystem functioning pesticide use chemical compounds complex food web tritrophic interactions wildlife-friendly rural livelihoods endangered bird species endangered bat species endemic endemic birds endemic bats beneficial impact IUCN Lore Lindu National Park bioindicator indicator species forest margin agricultural habitat agroforestry systems population density predation activity species activity cacao flower cacao pod Orthoptera linear mixed effect models Tukey Post Hoc Test AICc model selection generalized least squares restricted maximum likelihood model simplification species richness estimator species accumulation linear mixed-effects models Likelihood Ratio Test Maximum Likelihood nocturnal insects diurnal arthropods nocturnal arthropods diurnal insects landscape context Land- und Forstwirtschaft (PPN621302791)

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