Le microenvironnement tumoral, et notamment le stress hypoxique, joue un rôle immunosuppressif permettant l’échappement des cellules tumorales à la surveillance du système immunitaire. Des études récentes ont montré que l’échange de microvésicules (MVs) entre les cellules tumorales et les cellules du système immunitaire peut être responsable de l’établissement d’un microenvironnement immunosuppressif. Dans ce contexte, nous avons étudié l’effet des MVs issues des cellules tumorales hypoxiques sur la cytotoxicité des cellules «Natural Killer» (NKs). Nos résultats démontrent clairement que les cellules NKs sont capables d’internaliser les MVs issues des cellules tumorales normoxiques et hypoxiques. Cependant, seules les MVs hypoxiques sont capables de diminuer significativement la cytotoxicité des cellules NKs. Ainsi, nous avons déterminé que les MVs dérivées des cellules tumorales hypoxiques séquestrent deux immunomodulateurs, le TGF- et le miR-23a. Nous avons montré que le transfert de TGF- et miR-23a aux cellules NKs était responsable de la diminution respective de l’expression du récepteur activateur NKG2D à leur surface et de la protéine membranaire associée aux lysosomes (LAMP-1/CD107a) impliquée dans la dégranulation des granules cytotoxiques. Dans la deuxième partie de cette étude nous avons montré que les cellules tumorales soumises à un stress hypoxique étaient capables de déjouer un système immunitaire fonctionnel et d’échapper ainsi à la surveillance immunitaire des cellules NKs. En effet, nos résultats ont clairement démontré que la résistance des cellules tumorales hypoxiques à la lyse par les cellules NKs n’était pas liée à un défaut de reconnaissance, mais plutôt à l’activation d’un mécanisme de résistance intrinsèque dans les cellules tumorales. Ce mécanisme de résistance implique l’activation de l’autophagie qui opère dans les cellules tumorales pour dégrader le granzyme B, une protéase à sérine secrétée par les cellules NKs dont l’internalisation par les cellules tumorales cibles est nécessaire pour induire leur mort. Les expériences d’imagerie cellulaire combinées à des approches biochimiques ont confirmé que le niveau de granzyme B dans les cellules tumorales hypoxiques était significativement mois élevé par rapport à celui des cellules tumorales normoxiques. Ces résultats suggèrent fortement que le granzyme B est destiné à être dégradé par autophagie dans les cellules tumorales hypoxiques. En effet, l’inhibition génétique et pharmacologique de l’autophagie dans les cellules tumorales hypoxiques était suffisante pour contrecarrer la dégradation de granzyme B et ainsi restaurer la sensibilité des cellules tumorales hypoxiques à la lyse par les cellules NKs. Nos résultats ont clairement établi que l’inhibition de l’autophagie pouvait améliorer la réponse immunitaire antitumorale dépendante des cellules NK. Nous avons validé ce concept in vivo chez la souris en utilisant deux modèles syngéniques de cancer du sein et de mélanome. L’ensemble de nos travaux indiquent clairement que le stress hypoxique, qui est une caractéristique majeure du microenvironnement tumoral, peut favoriser l’établissement d’un microenvironnement immunosuppressif par plusieurs mécanismes qui ne s’excluent pas mutuellement. En effet, le stress hypoxique modifie les caractéristiques des cellules tumorales et active des mécanismes de résistance à la surveillance immunitaire. De plus, les cellules tumorales modifiées peuvent éduquer et exporter leur phénotype hypoxique aux cellules immunitaires présentes dans le microenvironnement afin d’affaiblir leur pouvoir cytotoxique. Nos résultats ouvrent ainsi la voie à la mise en place de nouvelles applications cliniques en immunothérapie anticancéreuse basées sur la réactivation des lymphocytes cytotoxiques et l’inhibition simultanée de l’autophagie. / The tumor microenvironment, including hypoxic stress plays an immunosuppressive role in tumor cell escape from immune surveillance. Recent studies have shown that the exchange of microvesicles (MVs) between tumor cells and cells of the immune system could be responsible for the establishment of an immunosuppressive microenvironment. In this context, we investigated the effect of MVs derived from hypoxic tumor cells on the cytotoxicity of Natural Killer (NK) cells. Our results clearly demonstrated that NK cells are able to internalize MVs derived from both normoxic and hypoxic tumor cells. However, only hypoxic MVs are able to significantly reduce the cytotoxicity of NK cells. Thus, we revealed that MVs derived from hypoxic tumor cells sequester two immunomodulators, TGF- and miR-23a. We have shown that the transfer of TGF- and miR-23a to NK cells was responsible for the respective reduction of the expression of NKG2D activating receptor on their surface and lysosomal-associated membrane protein (LAMP-1 / CD107a) involved in degranulation of cytotoxic granules.In the second part of this thesis we have shown that tumor cells subjected to hypoxic stress were able to outmaneuver a functional immune system and thus escape NK-mediated immune surveillance. Indeed, our results clearly demonstrated that the resistance of hypoxic tumor cells to NK-mediated lysis was not related to the impairment of recognition by NK cells, but rather to the activation of an intrinsic resistance mechanism in tumor cells. We showed that the resistance mechanism involves the activation of the autophagy which operates in the tumor cells to degrade the granzyme B, a serine protease secreted by NK cells and internalized by target tumor cells to induce cell death. Cell imaging experiments combined to biochemical approaches have confirmed that the level of granzyme B in hypoxic tumor cells was significantly higher compared to normoxic tumor cells. The analysis of the subcellular distribution of granzyme B reveals that it is predominantly present in the endosomes and autophagosomes of hypoxic tumor cells. These results strongly suggest that granzyme B is subjected to be degraded by autophagy in hypoxic tumor cells. Genetic and pharmacological inhibition of autophagy in hypoxic tumor cells was sufficient to block the degradation of granzyme B and thus restore the sensitivity of hypoxic tumor cells to NK-mediated lysis. Our results clearly demonstrated that inhibition of autophagy could improve NK-mediated antitumor immune response. We validated this concept in vivo using two syngeneic mice model of breast cancer and melanoma.Taken together, our work clearly shows that hypoxic stress, which is a major feature of the tumor microenvironment, can promote the establishment of an immunosuppressive microenvironment by several mechanisms which are not mutually exclusive. Thus, hypoxic stress changes the characteristics of tumor cells and activates the mechanisms of resistance to immune surveillance. In addition, tumor cells can educate and export their hypoxic phenotype to the immune cells in the microenvironment in order to impair their cytotoxicity. Our findings pave the way for the development of new clinical applications in cancer immunotherapy based on the reactivation of cytotoxic lymphocytes and simultaneous inhibition of autophagy.

Des mutations du gène Ras jouent un rôle essentiel dans le développement tumoral. Les GTPases Ral , RalA et RalB, sont des effecteurs proximaux de l’oncogène Ras. RalA permet la croissance en absence de substrat et RalB est nécessaire à l'autophagie et à la résistance à l'apoptose des cellules cancéreuses. Cette thèse a pour objectif de clarifier les mécanismes moléculaires de la signalisation Ral impliqués dans l’oncogenèse dépendante des protéines Ras.Des criblages par double hydride ont été effectués par notre équipe et un interactome de Ral a été établi. Ce criblage a montré une interaction entre des protéines de la signalisation Ral et la protéine NDR1, une kinase pro-apoptotique appartenant à la voie " suppresseur de tumeur" Hippo. Le Projet 1 montre la régulation de NDR1 par la voie RalA-Exocyste- MAP4K4 en réponse au stress osmotique, oxydatif ou au traitement par le TNF-α. Dans cette voie, la kinase MAP4K4, un effecteur de RalA, via le complexe exocyste active directement NDR1. En outre, nous avons montré que la voie RalA-MAP4K4-NDR1 était nécessaire à l'apoptose déclenchée par le TNF-α ou par la surexpression de RASSF1A, suppresseur de tumeur appartenant à la voie Hippo. Nous avons donc montré que RalA a un rôle pro-apoptotique inattendue qui agit via la kinase NDR1, en plus de son rôle connu de proto-oncogène en aval de Ras.Le projet 2 montre que la protéine kinase NDR1 est un régulateur de l'autophagie. Des criblages par double hydride ont été effectués par notre équipe avec NDR1 comme appât et ont permis de montrer une interaction entre Beclin 1, une protéine majeure de l’autophagie, et NDR1. Nous avons montré que NDR1 était nécessaire à l'autophagie et à la formation des autophagosomes chez l'humain et la Drosophile. De plus, NDR1 est nécessaire à la formation du complexe Exo84 de l'exocyste, Beclin1 et RalB nécessaire à l'initiation de l'autophagie. Nous montrons également que RalB régule l'état d'activation de NDR 1 après induction de l'autophagie. En effet, en absence de RalB, nous avons observé une hyper - activation de NDR1 menant les cellules vers l'apoptose. Ainsi nous avons montré que NDR1 joue le rôle d'interrupteur favorisant l'autophagie ou favorisant l'apoptose suivant son état d'activation.Le projet 3 étudie l'implication de la voie RalGTPases-NDR1 dans l'oncogenèse dépendante de Ras et dissèque par quels mécanismes NDR1 y contribue. / Constitutive Ras signalling is one of the most frequent oncogenic event in human cancers. Thus, it is imperative to identify new therapeutic options targeting downstream effectors of Ras signalling. Ras-like GTPases RalA and RalB are proximal effectors of oncogenic Ras. RalA was reported to support anchorage independent proliferation and RalB regulates autophagy and inhibits apoptosis of cancer cells. Ral proteins execute these functions via several direct effectors as the exocyst, an octameric complex originally identified as regulator of vesicles trafficking. The global goal of this PhD was to better decipher the molecular mechanisms underlying the functions of Ral GTPases in oncogenesis.To extend the Ral interactome, i.e. the protein-protein interaction network centered on Ral, we performed yeast-two hybrid screenings which led to the identification of the NDR1 kinase, belonging to the tumor suppressor Hippo pathway. NDR1 functions in oncogenesis were investigated in the context of three projects.In Project 1, we showed that NDR1-dependent apoptosis is regulated by a RalA/Exocyst/MAP4K4/NDR1 cascade. We reported that under osmotic or oxidative stresses or TNF-α treatment, the Ste20-like MAP4K4 kinase, an effector of RalA via the exocyst complex, directly activates NDR1. Moreover, we found that TNF-α treatment or overexpression of the tumor suppressor RASSF1A, which belongs to the Hippo pathway, leads to apoptosis through this RalA/Exocyst/MAP4K4/NDR1 pathway. This novel and unexpected pro-apoptotic role of RalA suggests that the RalA GTPase can positively signal in tumor suppressor pathways via the kinase NDR1, in addition to its proto-oncogenic role downstream of Ras. In Project 2, we described the NDR1 protein kinase as a conserved regulator of autophagy. Using NDR1 as bait in yeast two hybrid screens, we fished Beclin1, a key regulator of autophagy, and we validated the existence of a direct biochemical NDR1-Beclin1 interaction. We showed that NDR1promotes autophagosome formation in human cells and Drosophila larvae. Furthermore, we observed that NDR1 supports the interaction of the exocyst component Exo84 with Beclin1 and RalB, which is required to initiate autophagosome formation. Very interestingly, under prolonged autophagy, RalB depletion triggers hyperactivation of NDR1 resulting in NDR1-dependent apoptosis. Thus, it appears that the NDR1 kinase could act as a switch between autophagy (=survival) or apoptosis (=death), under the control of RalB. In Project 3, we addressed the role of the newly identified RalGTPases-NDR1axis in Ras - induced oncogenesis and tumorigenesis.

La peau est un épithélium spécialisé vital et fragile, qui évolue avec l’âge et est influencé par l’environnement, notamment les radiations solaires. Des données sont disponibles sur la réponse du réseau mitochondrial et le devenir des mitochondries endommagées en réponse à des stress chimiques et environnementaux dans plusieurs systèmes expérimentaux, mais ces processus restent peu étudiés dans les cellules cutanées. Dans ce contexte, le projet de thèse visait à analyser l’effet (i) de l’irradiation UVB sur la dynamique mitochondriale (en particulier la fragmentation des mitochondries) dans des kératinocytes primaires humains normaux, qui constituent la première ligne de défense contre les agressions externes ; (ii) d’un traitement par des poisons mitochondriaux sur les mitochondries contenues dans des kératinocytes ou des fibroblastes primaires humains normaux. Dans un premier axe de la thèse, nous avons mis au point une méthode originale (Mitoshape) basée sur l’imagerie confocale, permettant d’estimer à la fois qualitativement et quantitativement la morphologie du réseau mitochondrial dans des cellules vivantes après irradiation UVB. Grâce à cette technologie, nous avons pu montrer que les UVB induisaient une fragmentation du réseau mitochondrial dans les kératinocytes primaires, dont nous avons étudié les acteurs biochimiques. Dans un deuxième axe, nous avons montré que les poisons mitochondriaux avaient la capacité d’endommager les mitochondries dans des kératinocytes et des fibroblastes humains primaires et induisaient une autophagie générale sans toutefois exclure la présence d’une mitophagie dépendante de la voie PINK1/PARKIN. Outre son intérêt fondamental, ce travail (réalisé en collaboration avec la société de cosmétologie SILAB dans le cadre d’un partenariat industriel CIFRE) ouvre la voie à l’identification d’actifs naturels capables de préserver et/ou restaurer les paramètres fonctionnels mitochondriaux suite à des stress. / The skin is a specialized type of epithelium, both vital and fragile, which evolves with age and is continuously exposed to environmental stresses, such as solar radiations. While data is available about the response of the mitochondrial network and the fate of damaged mitochondria after chemical or environmental stresses in numerous experimental systems, little is known about these processes in skin cells. The aim of the present thesis was to study the impact (i) of UVB irradiation on mitochondrial dynamics (especially mitochondrial fragmentation) in normal human epidermal keratinocytes, which represent the first line of defence against environmental insults; (ii) of poisoning mitochondria of keratinocytes and normal human fibroblasts with chemical drugs. In a first axis, we developed an original method (called Mitoshape) based on confocal microscopy, to estimate qualitatively and quantitatively the morphology of the mitochondrial network within live cells following UVB irradiation. Using this technology, we demonstrated that UVB irradiation induces mitochondrial fragmentation in normal human keratinocytes, and studied the biochemical actors involved in this response. In a second axis, we showed that the use of mitochondrial poisons could damage mitochondria of keratinocytes and normal human fibroblasts and induce bulk autophagy, although it is not possible to formally rule out the involvement of a PINK1/PARKIN-dependent pathway of mitophagy. In addition to its fundamental interest, this work (performed in collaboration with the cosmetic company SILAB in the context of a CIFRE PhD fellowship from ANRT) paves the way for the screening of novel bioactive agents able to protect and restore mitochondria following stresses.

A desnutrição pode induzir lesão celular, comprometendo os mecanismos envolvidos de proliferação, diferenciação e morte celular. Estudos de nosso laboratório tem demonstrado, em modelo murino de desnutrição protéica e protéico-energética, hipoplasia medular com evidências histológicas de alteração da matriz extra celular. Nosso objetivo foi avaliar a eventual participação dos processos de apoptose, necrose e autofagia no desenvolvimento da hipoplasia medular observada nesse modelo. Para isso foram utilizados dois grupos de camundongos C57BL/6J machos, adultos, mantidos em gaioleiros metabólicos. O grupo controle (C) recebeu ração normoproteíca contendo 12% de proteína e o grupo desnutrido (D), alimentado com ração hipoprotéica contendo 2% de proteína. A fonte protéica utilizada foi a caseína. O período de indução da desnutrição foi cerca de cinco semanas, definido pela perda de 20 a 25 % de peso corpóreo por parte dos animais do grupo desnutrido. Após esse período, os animais de ambos os grupos foram anestesiados e realizada a coleta das amostras biológicas para avaliação nutricional e hematológica e coletadas células da medula óssea para avaliação da apoptose, necrose e autofagia. Para avaliação da apoptose e necrose as células foram duplamente marcadas com Annexina V, PI e caspase 3 que foram analisadas por citometria de fluxo . A expressão da protéina BCL-2 foi quantificada pela técnica de Western Blotting. A análise não demonstrou diferença estatística entre os grupos para esses parâmetros. Para avaliação da autofagia extraiu-se proteínas das células da medula óssea e avaliou-se a expressão das proteínas Akt e mTOR total e fosforilado , os complexos de mTor (Raptor, Rictor e Gβl) , Beclin-1 e LC3II. Os resultados demonstraram aumento significativo de mTOR total ,Raptor , Beclin-1 e LC3II e diminuição na fosforilação de mTOR nas células oriundas de animais desnutridos em relação ao grupo controle. A desnutrição não modificou a expressão de Akt total, porém houve diminuição da fosforilação de Akt e diminuição na expressão das proteínas Rictor e Gβl nas células analisadas. Como os processos apoptóticos e autofágicos podem ser de difícil detecção in vivo, também refizemos os experimentos in vitro, estimulando as células com compostos pró-apoptóticos (campotecina) e pró-autofágicos (tamoxifeno). Nesses experimentos observamos que, apenas quando estimulamos as células de animais desnutridos com camptotecina, as mesmas, no período de 12 horas apresentaram maior percentagem de apoptose inicial em relação a 0 horas , sugerindo que há um período em que as células desnutridas são sinalizadas para via apoptótica sendo mais susceptível ao estimulo. As células de animal desnutrido estimulado apresentaram após 12 horas aumento significativo da apoptose tardia em relação ao controle estimulado , indicando que nesse período há um aumento da apoptose tanto em processo inicial , tanto em processo tardio. Avaliamos a autofagia em uma cinética de 0, 2, 6, 18 e 24 horas in vitro e observamos aumento significativo da autofagia em células da medula óssea de animais desnutridos em 0 horas e após 18 horas de estímulo com tamoxifeno (20 µM) em relação ao respectivo controle, demonstrando que nesse período a autofagia começa a ser induzida através do estimulo mais facilmente do que o controle. Autofagia é um dos principais contribuintes para o metabolismo celular, fornecendo nutrientes quando os mesmos estão indisponíveis, e, portanto, no nosso modelo de desnutrição protéica a hipoplasia medular estaria em processo autofágico como mecanismo de reparo e sobrevivência. / Malnutrition can induce cell damage, compromising the mechanisms involved in proliferation, differentiation and cell death. Studies from our laboratory have demonstrated, in a murine model of protein malnutrition and protein-energy, marrow hypoplasia with histologic evidence of alteration of the extracellular matrix. Our objective was to evaluate the possible involvement of the processes of apoptosis, necrosis and autophagy in the development of bone marrow hypoplasia observed in this model. For this we used two groups of C57BL/6J adult male kept in metabolic gaioleiro. The control group (C) received normal protein diet containing 12% protein and undernourished group (D), fed low protein diet containing 2% protein. The protein source used was casein. The induction period of undernutrition was approximately five weeks, as defined by loss of 20 to 25% of body weight per part of group malnourished. After this period, the animals of both groups were anesthetized and held the collection of biological samples for nutritional assessment and hematology and bone marrow cells collected for evaluation of apoptosis, necrosis and autophagy. For assessment of apoptosis and necrosis of the cells were double labeled with Annexina V and PI caspase 3 were analyzed by flow cytometry. The expression of Bcl-2 was quantified by Western Blotting technique. The analysis revealed no statistical difference between the groups for these parameters. For evaluation of autophagy proteins extracted from bone marrow cells and evaluated the expression of proteins Akt and phosphorylated and total mTOR, complexes of mTOR (Raptor, and Rictor Gβl), Beclin-1 and LC3II. The results showed significant increase in overall mTOR, Raptor, and LC3II Beclin-1 and decreased phosphorylation of mTOR in cells derived from malnourished animals compared to the control group. Malnutrition did not modify the expression of Akt total, but decreased phosphorylation of Akt and decreased expression of the protein Rictor and Gβl cells analyzed. As apoptotic and autophagic processes can be difficult to detect in vivo, also redid the experiments in vitro, stimulating the cells with pro-apoptotic compounds (campotecina) and pro-autophagic (tamoxifen). In these experiments we observed that, when only stimulate cells with camptothecin malnourished, the same at 12 hours had a higher percentage of initial apoptosis compared to 0 hours, suggesting that there is a period in which cells are signaled to via malnourished being more susceptible to apoptotic stimuli. The animals starved cells stimulated after 12 h showed significant increase in apoptosis compared to control late stimulated, indicating that at that time there is an increase in apoptosis both in the initial process, both late process. Autophagy evaluated in kinetics of 0, 2, 6, 18 and 24 hours in vitro and observed a significant increase in autophagy in bone marrow cells of malnourished at 0 hours and after 18 hours stimulation with tamoxifen (20 microM) than the respective control, demonstrating that this period autophagy begins to be induced by stimulating more easily than the control. Autophagy is a major contributor to cellular metabolism, providing nutrients when they are unavailable, and therefore in our model of protein malnutrition in the marrow hypoplasia would autophagic process as a mechanism for survival and repair.

A doença de Parkinson é a doença motora neurodegenerativa mais comum do mundo. Agregados proteicos contendo principalmente alfa-sinucleína é a principal marca da doença. Recentemente, tem sido demonstrado que defeitos na dinâmica mitocondrial e da autofagia são causados pelo acúmulo da proteína. No nosso estudo, foram utilizados neurônios derivados de SH-SY5Y ou de hiPSC de pacientes com a doença de Parkinson hereditária, além de leveduras para analisar a dinâmica mitocondrial e da autofagia e o envolvimento de proteínas desses processos na toxicidade da alfa- sinucleína. Foi observado a diminuição do tráfego mitocondrial em neurônios derivados das células SH-SY5Y que expressavam alfa-sinucleína A53T. Além disso a proteína mutante ainda levou ao aumento de espécies reativas de oxigênio, perturbação da autofagia e aumento da sinalização apoptótica. Os neurônios então foram tratados com NAP, um peptídeo neuroprotetor, que preveniu os efeitos tóxicos da alfa-sinucleína mutante. Leveduras contendo deleções nos genes Gem (Miro), Ypt53 (Rab5) e Atg8 (LC3) e expressando alfa-sinucleína dos tipos A30P e A53T, demonstraram que a toxicidade da alfa-sinucleína é dependente das disfunções na mitocôndria e na autofagia. A agregação da alfa-sinucleína A53T foi prevenida na ausência de Gem. Além disso, a toxicidade da proteína envolvendo a disfunção mitocondrial e sinalização apoptótica causada pelo estresse do ER foi dependente dos genes Gem e Atg8, respectivamente. Neurônios derivados de hiPSC de pacientes contendo a triplicação do gene da alfa-sinucleína, mostraram diminuição do transporte de mitocôndrias e do potencial de membrana da mitocôndria. Análises sobre a quantidade de vesículas lisossomais desses neurônios, demonstraram acúmulos dessas vesículas, sugerindo que a autofagia está alterada. Em um ensaio sobre a sensibilidade dos neurônios dopaminérgicos, foi observado que os neurônios contendo a alpha-sinucleína mutante são mais susceptíveis à rotenona, quando comparado com os neurônios dopaminérgicos do controle. A exposição à rotenona também causou mudanças na distribuição de mitocôndrias, sugerindo que o tráfego retrógrado da organela está alterado / Parkinson\'s disease (PD) is the most common motor neurodegenerative disease in the world. Protein aggregates containing mainly alpha-synuclein are a hallmark of disease. Mitochondria and autophagy defects have been suggested to be caused by alpha-synuclein toxicity. In this study, we investigated mitochondria and autophagy dynamics related to alpha-synuclein toxicity in neurons derived form SH-SY5Y cells, hiPSC from patients with familial PD or yeast. We found that SH-SY5Y neuroblastoma cells expressing A53T alfa- synuclein showed significantly inhibited mitochondrial trafficking. A53T alfa- synuclein also caused the highest increase in ROS production in the dysmobilized mitochondria in comparison to wild-type or A30P alfa- synuclein. Treatment with NAP, the 8 amino acid peptide identified as the active component of activity dependent neuroprotective protein (ADNP), completely annihilated the adverse effects of A53T on mitochondrial dynamics. During disruption of retrograde transport, we found disturbed autophagy and increased apoptosis signalization in neurons expressing A53T alpha-synuclein, suggest activation of the apoptosis pathway. Curiously, all groups expressing alpha-synuclein showed decreased levels of BCL-XL, revealing that mitochondria are susceptible to changes in the membrane potential in the presence of alphasynuclein. Nevertheless, treatment with NAP was effective in blocking the apoptosis pathway and restore autophagy. We created a model to study A30P and A53T alpha-synuclein toxicity related to Gem (Miro), Ypt53 (Rab5) and Atg8 (LC3) genes in Saccharomyces cerevisiae in which these genes were knocked down. We found that A30P alpha-synuclein toxicity was dependent on mitochondrial and autophagy dysfunction. A53T alpha-synuclein was more toxic than A30P alpha-synuclein, and its aggregation was dependent on Gem expression. A53T alpha-synuclein toxicity involving damaged mitochondrial and apoptotic signaling caused by ER stress was dependent on Gem and Atg8 genes, respectively. In a study involving dopaminergic neurons derived from hiPSCs from patients containing triplicated alpha-synuclein gene (SNCA3), we reported decreased mitochondrial trafficking and mitochondrial membrane potential, besides accumulation of lysosome vesicles. In a sensitivity assay, SNCA3 neurons demonstrated more susceptibility to rotenone toxicity, which alters intracellular mitochondrial distribution, impairing retrograde transport of the organelle

Depuis le début des années 1990, différentes stratégies de phytoremédiation ont été proposées pour réhabiliter les zones polluées par des éléments traces métalliques (ETM). Parmi ces stratégies, la phytoextraction consiste en l’absorption et l’accumulation par les plantes des ETM présents dans les sols. Afin de mettre en place cette stratégie, il a été proposé d’utiliser le peuplier en raison de sa croissance rapide, de son importante biomasse et de ses débouchés énergétiques. Cependant une proportion considérable des métaux absorbés par cet arbre est accumulée dans les feuilles alors que celles-ci chutent à l’automne. Ainsi, l’efficacité de phytoextraction du peuplier peut se trouver limitée si aucun mécanisme de remobilisation des ETM n’est mis en place au cours de la sénescence automnale. Dans ce contexte, une partie des travaux de cette thèse a été réalisée sur la parcelle expérimentale de Pierrelaye polluée suite à l’épandage d’eaux usées de la ville de Paris. Nous avons recherché parmi les 14 génotypes de peuplier présents sur le site, ceux qui sont les plus efficaces pour remobiliser les métaux des feuilles vers les parties pérennes. Des mesures de contenu en métaux, d’expression de gènes et des analyses corrélatives ont ouvert de nouvelles pistes concernant la gestion des métaux foliaires. Parce que la vacuole constitue le principal lieu de stockage des métaux de la cellule, les protéines d’efflux vacuolaire NRAMP (Natural Resistance-Associated Macrophage Protein) précédemment identifiées chez Arabidopsis thaliana, représentent de bons candidats pour stimuler la remobilisation des métaux foliaires. La caractérisation de leurs homologues chez le peuplier a donc été entreprise par expression chez la levure et chez A. thaliana. Afin de contrôler indépendamment le transport des métaux essentiels et non-essentiels chez les NRAMP, une étude visant à identifier les déterminants structuraux impliqués dans leur sélectivité a été réalisée. La caractérisation des mutants NRAMP affectés dans leur sélectivité par expression chez A. thaliana a mis en lumière leur impact sur l’accumulation et la tolérance aux métaux. Dans le but d’étudier l’implication de mécanismes plus généraux de recyclage des nutriments dans la remobilisation des métaux au cours de la sénescence foliaire, le rôle de l’autophagie a été testé chez A. thaliana. L’étude de plantes déficientes pour l’autophagie a montré l’implication de ce mécanisme dans l’efficacité d’utilisation des métaux et probablement dans leur remobilisation au cours de la sénescence. En combinant des études en champ sur le peuplier et de génétique moléculaire chez Arabidopsis, ce travail permet de proposer différentes pistes pour diminuer spécifiquement l’accumulation des ETM dans les feuilles de peuplier. / Since the early 1990s, various strategies have been proposed to rehabilitate trace element (TE) polluted areas by phytoremediation. Among these strategies, phytoextraction consists in TE uptake from soil and accumulation by plants. To implement this strategy, it has been proposed to use poplar due to its fast growth, its large biomass and its use in energy production. However, a substantial proportion of absorbed metals is accumulated in poplar leaves which fall in autumn. Thus, poplar phytoextraction efficiency may be limited if TE are not re-mobilized during autumn senescence. In this context, part of this thesis work has been carried out on the experimental field of Pierrelaye which was polluted by the spreading of sewage water from Paris. Among the 14 poplar genotypes growing on the field, we tried to identify those that efficiently remobilize leaf metals to perennial organs. Metal content, gene expression and correlative analyses have been undertaken, providing new insight in the management of metals in leaves. Because the vacuole is the main metal storage compartment in the cell, NRAMP (Natural Resistance-Associated Macrophage Protein) vacuolar efflux proteins previously identified in Arabidopsis thaliana are good candidates to enhance leaf metal remobilization. Characterization of their homologues in poplar was therefore undertaken by expression in yeast and in A. thaliana. In order to independently control the transport of essential and non-essential metals by NRAMP, a study aiming to identify the structural determinants involved in selectivity was undertaken. Expression of NRAMP mutants affected in their selectivity in A. thaliana highlighted their impact on metal accumulation and tolerance. To study the involvement of more general nutrient recycling mechanisms in metal remobilization during leaf senescence, the involvement of autophagy was tested in A. thaliana. Physiological characterization of autophagy deficient plants indicated that this mechanism plays a role in metal use efficiency and probably in metal remobilization during senescence. By combining a field approach on poplar and molecular genetics in Arabidopsis, this work opens multiple perspectives to specifically reduce the accumulation of TE in poplar leaves.

Osteoarthritis (OA) is the most common form of arthritis worldwide and is characterised by the progressive degradation of articular cartilage. Ageing is the primary risk factor associated with OA. However, the roles of ageing-related mechanisms in cartilage homeostasis are poorly understood. The class three histone deacetylase, Silent mating type information regulation 2 homolog (SIRT1) has been extensively shown to regulate lifespan in lower organisms and signalling pathways linked to mammalian ageing. My thesis explores the role of Sirtuin 1 in cartilage homeostasis and OA. I used in vitro experiments with chondrocyte cell lines, human clinical samples, novel genetically modified cartilage specific and whole body SIRT1 deficient mice alongside molecular biological tools to investigate my research questions. Human OA cartilage showed decreased SIRT1 compared to healthy cartilage. Mice with cartilage-specific SIRT1 deletion showed greater cartilage degradation during ageing and in an experimental OA model. In vitro and in vivo studies showed SIRT1 to directly regulate autophagy in chondrocytes. More importantly, the activation of autophagy using spermidine protected against experimental OA in wild-type mice but not in cartilage-specific SIRT1 deficient mice. In addition, my data revealed whole body SIRT1 deficient mice had increased early joint inflammation in repose to injury but displayed less cartilage loss over time in an experimental OA model. Together I have shown that SIRT1 declines with age and contributes to OA due to dysregulated autophagy. However, chronic low grade inflammation caused by SIRT1 loss was protective. My data suggest these pathways can be targeted to treat OA.

As our body's guardian, the immune system maintains systemic health through removal of pathogens, damage and cancer. Ageing of the immune system is associated with compromised immune responses as well as decreased tumour surveillance and is therefore a key risk factor for major diseases in the elderly. Adaptive immune responses are mediated by T and B lymphocytes, and failure in adaptive immunity is a particular hallmark of the ageing organism. Here we show that autophagy is impaired in aged murine B lymphocytes, and loss of autophagy causes severely reduced B cell responses. Our data demonstrate that B cell senescence can be reversed in an autophagy-dependent manner by spermidine, a naturally occurring polyamine metabolite. Mechanistically, our study reveals that the translation factor eIF5A, that requires spermidine for its activation, regulates the expression of the master autophagy/lysosomal transcription factor TFEB. Importantly, we show in humans that spermidine, eIF5A and TFEB levels decrease with age and may serve as ageing biomarkers. Taken together our results indicate that the translational control of autophagy by eIF5A is dysregulated with ageing, and identify a novel pathway with therapeutic implications.

Breast cancer is the most commonly occurring cancer in women, with incidence rates approaching 1.38 million cases per year worldwide. Over the last few decades, there have been numerous attempts to develop, synthesise and advance into the clinic novel and selective breast cancer therapies. Research work has shown that bisnaphthalimidopropyl diaminodicyclohexylmethane (BNIPDaCHM) exerts potent in vitro anti-cancer activities and strong DNA binding properties. The aim of this thesis was to synthetise novel bisnaphthalimidopropyl derivatives (BNIPs) and investigate their subsequent modes of action within two human metastatic breast cancer cell lines, MDA-MB-231 and SKBR-3. A series of novel BNIPs, bisnaphthalimidopropyl-piperidylpropane (BNIPPiProp), bisnaphthalimidopropyl- ethylenedipiperidine (BNIPPiEth) and (trans(trans))-4,4’-methylenebis-cyclohexylamine (trans,trans-BNIPDaCHM) were synthesised, characterised and studied in comparison to BNIPDaCHM for their DNA binding and anti-cancer activities against MDA-MB-231 and SKBR-3 cells. Thermal denaturation studies have shown that BNIPs can intercalate and stabilize the double helix of Calf Thymus, each BNIP can competitively displace EtBr from DNA in a dose dependent manner and by UV binding studies, high affinity was found for the three novel BNIPs. After 24 hours treatment, all novel BNIPs, exhibited strong cytotoxicity with IC50 values ranging from 1.4 μM to 3.3 μM in MDA-MB-231 cells and 0.2 - 0.7 μM in SKBR-3 cells, confirming the importance of bisnaphthalimidopropyl functionality. BNIPs were also found to increase intracellular ROS levels after 8 hours treatment and induce a significant increase in DNA strand breaks compared to endogenous levels, after 24 hour treatment in both cell lines. After cell synchronisation, cell cycle distribution was studied, revealing that trans,trans-BNIPDaCHM induces sub-G1 cell population arrest in MDA-MB-231 and SKBR-3 cells, after 24 hours treatment. In addition, BNIPs induced apoptotic phosphatidylserine exposure, after 0.5 hours treatment, inhibited Caspase-3 activity and increased autophagy, after 24 hour treatment in MDA-MB-231 and SKBR-3 cells. Moreover, BNIPs inhibited histone deacetylases (HDAC) activity after 24 hours treatment in MDA-MB-231 and SKBR-3 cells and BNIPDaCHM was identified as a potential SIRT2 inhibitor, in SKBR-3 cells. According to Proteome Profiler Arrays, BNIPDaCHM and BNIPPiEth altered the expression of cell stress-related proteins in a cell dependent manner and bioinformatic analysis revealed two novel, putative pathways for BNIP-induced oxidative stress-mediated cell death in MDA-MB-231 and SKBR-3 cells. The above findings indicate that BNIPs represent promising candidates for future breast cancer studies and cancer treatment.

L’Adénovirus (AdV) entre dans la cellule hôte par endocytose puis s’échappe de l’endosome en lysant la membrane de ces vésicules, empêchant ainsi sa dégradation via les lysosomes. Or, les membranes endommagées sont reconnues comme des signaux de danger par le système immunitaire et peuvent déclencher une réponse antivirale, telle que l’expression d’interféron (IFN). Dans nos conditions expérimentales, nous avons montré que l’infection par l’AdV n’induit pas l’expression d’IFNβ et qu’au contraire, le virus semble inhiber cette réponse. En revanche, l’entrée du virus active TBK1 (Tank Binding Kinase 1) qui est une kinase clef de la voie IFN mais qui est également impliquée dans la régulation de l’autophagie, une voie de dégradation cellulaire. Notre laboratoire a précédemment montré que l’autophagie est activée lors de l’entrée de l’AdV, par la rupture de la membrane endosomale. Nous avons donc étudié le mécanisme d’activation et le rôle de TBK1 lors de l’infection par l’AdV. Nos résultats montrent que la rupture de la membrane endosomale induite par le virus est nécessaire pour l’activation de TBK1 et que cette kinase est recrutée spécifiquement sur les sites de dommage membranaire. De plus, nous avons montré que TBK1 est impliqué dans l’activation de l’autophagie induite par l’AdV. Cependant, contrairement à ce qui est décrit pour l’autophagie dirigée contre les bactéries, cette activation de TBK1 est indépendante de NDP52 et d’autres adaptateurs conventionnels de l’autophagie. En résumé, nos travaux montrent que l’AdV est capable de contrôler la réponse IFN et que les ruptures de membrane induites par le virus activent TBK1 et l’autophagie par un nouveau mécanisme. Nos données suggèrent un rôle conservé de TBK1 dans l’activation de l’autophagie sélective contre les agents pathogènes. / Adenoviruses enter host cells by endocytosis and then escape from the endosomal compartment by lysing the endosomal membrane, thereby preventing its degradation via lysosomes. However, damaged membranes are recognized as danger signals by the cell intrinsic immune system and trigger an antiviral response, such as expression of interferon (IFN). In our experimental conditions we have shown that adenovirus infection does not induce the expression of IFNβ. On the contrary, our data suggest that the virus appears to inhibit the IFNβ response. However, adenovirus entry activates TBK1 (Tank Binding Kinase 1), which is a key kinase of the IFN pathway but is also involved in the regulation of autophagy, a cellular degradation pathway. Our laboratory previously showed that autophagy is activated upon rupture of the endosomal membrane during adenovirus entry. We therefore studied the activation mechanism and the role of TBK1 during adenovirus infection. Our results show that virus-induced endosomal membrane rupture is required for activation of TBK1 and that this kinase is specifically recruited at membrane damage sites. In addition, we show that TBK1 is involved in the activation of autophagy induced by adenovirus. TBK1 activation is independent of NDP52 and other conventional autophagic adapters, which is in contrast to membrane damaging bacteria. Thus, autophagy targeting membrane penetrating adenoviruses differs from the one induced by bacteria. In summary our work shows that adenovirus is able to control the IFN response and that membrane rupture induced by adenoviruses activates TBK1 and autophagy by a novel mechanism. In contrast our data suggest a conserved role for TBK1 in driving selective autophagy against invading pathogens.