L’adénocarcinome pancréatique canalaire (PDAC) est un cancer de mauvais pronostic en partie en raison de la résistance aux traitements conventionnels de chimiothérapie ou de radiothérapie. Certaines substances bioactives issues de l’alimentation (BFCs), prooxydantes sont capables de potentialiser l’action cytotoxique des drogues conventionnelles dans le PDAC. Par ailleurs ces BFCs pourraient augmenter les cassures de l’ADN induites par les radiations ionisantes. Objectifs : évaluer l’action combinée de BFCs en association avec la chimiothérapie et la radiothérapie dans des modèles de PDAC et identifier les mécanismes impliqués dans la chimio/radiosensibilisation. Méthodes : La survie cellulaire a été évaluée in vitro en présence de BFCs en combinaison sur 4 lignées tumorales pancréatiques. La production d’espèces réactives de l'oxygène (ROS) a été mesurée par cytométrie en flux et par microscopie à fluorescence. Les mécanismes moléculaires ont été décryptés par western-blot (voies de signalisation) et cytométrie en flux (cycle cellulaire et apoptose). Enfin nous avons évalué l’association de BFCs en gavage avec la chimiothérapie par gemcitabine intrapéritonéale et avec la radiothérapie de 2 Gy par fraction in vivo, sur des greffes sous-cutanée de cellules CAPAN-2. Résultats : In vitro, le resvératrol (R), la capsaïcine (C) et le sulforaphane (S) étaient cytotoxiques avec effet inhibiteur significativement plus élevé en combinaison (R+C), (C+S) ou (R+C+S), sans effet sur les fibroblastes. Par ailleurs, les combinaisons potentialisaient l’action autrement limitée de la gemcitabine sur les cellules testées in vitro. In vivo, l’addition de R+C au traitement par gemcitabine à dose réduite a permis une régression tumorale équivalente à celle obtenue avec la gemcitabine à pleine dose. Par ailleurs, in vitro, l’ajout des BFCs seuls et combinés à la radiothérapie augmente de façon significative la toxicité cellulaire sur la lignée épithéliale CAPAN-2, comparé au traitement par radiothérapie seule comme aux traitements par BFCs seuls ou combinés. In vivo, la combinaison R+C associée à la radiothérapie a permis une diminution significative des volumes tumoraux comparée à la radiothérapie seule. L’étude des voies de signalisation a montré une augmentation de protéines pro-apoptotiques avec l’association R+C, en rapport avec une induction augmentée de ROS, mais aussi, de façon surprenante, une inhibition de la réparation de l’ADN par inhibition de la phosphorylation d’ATM. Ces deux effets combinés précipitaient la mort des cellules tumorales. Conclusions : Les combinaisons de R+C ont un effet chimiosensibilisant et radiosensibilisant dans un modèle préclinique de PDAC, avec des mécanismes moléculaires identifiés pertinents dans le contexte des thérapies testées. En associant les BFCs, à la chimioradiothérapie avec gemcitabine, on peut espérer une double potentialisation de la radiothérapie et de la chimiothérapie, en augmentant l’efficacité de la RT, et en diminuant la dose de gemcitabine associée pour une même efficacité et une meilleure tolérance du traitement.Mots clés : Cancer du pancréas, Substances bioactives issues de l’alimentation, radiothérapie, chimiothérapie, resvératrol, capsaïcine / Background: Pancreatic ductal adenocarcinoma (PDAC) is of poor prognosis in part because of resistance to conventional treatments such as chemotherapy or radiotherapy. Some naturally occurring bioactive food components (BFCs), with pro-oxidant properties are able to potentiate the cytotoxic action of conventional drugs in the PDAC. In addition, these BFCs could increase the DNA breaks induced by ionizing radiation. Objectives: To evaluate the combined action of several BFCs in combination with chemotherapy and radiotherapy in PDAC models and to identify mechanisms involved in chemo / radiosensitization at the cellular and molecular levels. Methods: Cell survival was evaluated in vitro in the presence of BFCs in combination on 4 pancreatic tumor cell lines. The production of reactive oxygen species (ROS) was measured by flow cytometry and fluorescence microscopy. Molecular mechanisms have been decrypted by western blot (signaling pathways) and flow cytometry (cell cycle and apoptosis). Finally, we evaluated the association of BFCs in gavage with intraperitoneal gemcitabine chemotherapy and with radiotherapy (2 Gy/fraction) in vivo, on subcutaneous CAPAN-2 cell xenografts. Results: In vitro, resveratrol (R), capsaicin (C) and sulforaphane (S) were cytotoxic with significantly higher inhibitory effect in combination (R + C), (C + S) or (R + C + S), without effect on fibroblasts. In addition, the combinations potentiated the otherwise limited action of gemcitabine on cells tested in vitro. In vivo, the addition of R + C to treatment with gemcitabine at reduced dose allowed tumor inhibition equivalent to that obtained with gemcitabine at full dose. Furthermore, in vitro, the addition of BFCs alone and in combination with radiotherapy significantly increases cellular toxicity on the CAPAN-2 epithelial line, compared to radiotherapy alone and BFCs alone or combined. In vivo, the combination R + C associated with radiotherapy allowed a significant decrease in tumor volumes compared to radiotherapy alone. The study of signaling pathways showed an increase of proapoptotic proteins with the association R + C and radiotherapy, in relation with an increased induction of ROS, but also, surprisingly, an inhibition of the repair of the DNA by inhibition of ATM phosphorylation. These two combined effects precipitated the death of the tumor cells. Conclusions: Combinations of R + C have a chemosensitizing and radiosensitizing effect in a preclinical model of PDAC, with identified molecular mechanisms relevant in the context of the therapies tested. By combining BFCs with radiochemotherapy with gemcitabine, we can hope for a double potentiation of radiotherapy and chemotherapy, by increasing the effectiveness of RT, and by reducing the dose of gemcitabine associated for similar efficiency and better tolerance treatment.

Agarwood mainly formed by Aquilaria species is an economically and pharmaceutically important natural product used for the production of incense, perfumes and traditional medicines in Asia. Endophytic bacteria are potentially important in producing pharmaceutical compounds found in the plants. The aim of this research is to isolate, classify and identify major endophytic bacteria groups associated with agarwood of Aquilaria crassna species in Khanh Hoa province, Vietnam. Agarwood samples were collected and surface-sterilized, and total endophytic bacteria were isolated on Tryptic Soy Agar by the spread plate method. Major bacterial groups were classified according to the Bergey’s system. The 16S rRNA gene fragments were amplified using PCR method, and bacterial isolates were identified using this gene sequence similarity based method. The results showed that from 0.121 g of agarwood, total 26 bacterial isolates were purified and divided into 7 separated groups, in which the group II of Gram-positive spore-forming bacteria was the most dominant. Especially, two dominant strains, T14 of group II, and T15 of group VII, were identified as Bacillus pumilus and Alcaligenes faecalis, respectively.!To our knowledge, it is the first time that biodiversity of bacterial endophytes associated with agarwood from Aquilaria crassna in Vietnam has been reported, which requires of further study to understand the relationship of endophytic bacteria to agarwood-producing Aquilaria crassna species as well as explore their potential applications towards the development of valuable bioactive compounds. / Trầm hương, chủ yếu được tạo ra từ các loài cây Dó (Aquilaria), là một sản phẩm tự nhiên có giá trị kinh tế và y học đã được sử dụng để sản xuất hương, nước hoa và các dược phẩm truyền thống ở châu Á. Vi khuẩn nội cộng sinh thực vật được cho là một nguồn quan trọng cho các dược phẩm có nguồn gốc thực vật. Mục tiêu của nghiên cứu này là nhằm phân lập, phân loại và định danh các nhóm vi khuẩn chính trên Trầm hương Khánh Hòa, Việt Nam. Các mẫu Trầm hương được thu nhận và vô trùng bề mặt dùng để phân lập vi khuẩn tổng số trên môi trường TSA bằng phương pháp trải đĩa. Các nhóm vi khuẩn chính được phân loại dựa theo hệ thống chuẩn Bergey. Đoạn gen mã hóa 16S rRNA được khuếch đại bằng phương pháp PCR, và các chủng vi khuẩn được định danh bằng phép so sánh độ tương đồng trình tự của đoạn gen này. Kết quả cho thấy từ 0,121 g mẫu trầm hương, chúng tôi đã phân lập được 26 chủng vi khuẩn và phân chúng vào 7 nhóm chính, trong đó nhóm II bao gồm các vi khuẩn Gram dương sinh bào tử là nhóm chiếm ưu thế nhất. Đặc biệt, có 2 chủng ưu thế là chủng T14 thuộc nhóm II và chủng T15 thuộc nhóm VII đã được định danh tương ứng là Bacillus pumilus và Alcaligenes faecalis.!Đây là nghiên cứu đầu tiên về đa dạng sinh học của các nhóm vi khuẩn chính trên Trầm hương Khánh Hòa. Vì vậy, cần có những nghiên cứu tiếp theo nhằm tìm hiểu mối quan hệ giữa các vi khuẩn nội cộng sinh với cây Dó bầu (Aquilaria crassna) tạo trầm cũng như khai thác những ứng dụng tiềm năng của các vi khuẩn này theo hướng phát triển các hoạt chất sinh học có giá trị.

Materiais vítreos e vitrocerâmicos bioativos podem ser usados particulados ou como scaffolds em diferentes tratamentos de defeitos ósseos. Tratamentos térmicos que possibilitam o desenvolvimento de scaffolds a partir de composições de vidros bioativos introduzem fases cristalinas em sua estrutura amorfa com potencial impacto na bioatividade e biocompatibilidade do material. O objetivo do presente estudo foi avaliar, qualitativa e quantitativamente, o desenvolvimento do fenótipo osteogênico de culturas de células osteoblásticas sobre substratos vítreos e vitrocerâmicos bioativos. Células MC3T3-E1 foram cultivadas em condições osteogênicas por períodos de até 21 dias sobre superfícies de Bioglass® 45S5, de duas preparações de vitrocerâmica bioativa e altamente cristalina, Biosilicato® e Biosilicato® para scaffold, e de borosilicato (vidro bioinerte). Foram avaliados, nos períodos de 7, 12 e 21 dias, morfologia celular, formação de matriz mineralizada e expressão de genes relacionados à osteogênese. Os resultados mostraram confluência das culturas sobre as superfícies de vidros e vitrocerâmicas, com progressiva formação de multicamadas celulares. A quantificação de vermelho de Alizarina revelou aumento de mineralização para culturas sobre materiais bioativos, com os maiores valores para Biosilicato® para scaffold. Expressão diferencial de genes foi observada nos 3 períodos de culturas sobre os materiais vítreo e vitrocerâmicos bioativos em comparação ao vidro bioinerte e sobre as vitrocerâmicas em comparação ao vidro bioativo. Os resultados permitem concluir que modificações em aspectos químicos de materiais vítreos e vitrocerâmicos, com efeitos sobre sua bioatividade, resultam em alteração do potencial osteogênico e do perfil de expressão gênica de células osteoblásticas in vitro. A maior atividade osteogênica sobre o Biosilicato® para scaffold permite considerar esse material um potencial candidato para aplicações em defeitos ósseos. / Bioactive glasses and glass-ceramics have been used as bone substitutes in either particulate or scaffold forms. Various thermal treatments that allow the development of scaffolds from bioactive glasses may create varied proportions of new crystalline phases in the amorphous phase with a potential impact on the bioactivity and biocompatibility of the material. The aim of the present in vitro study was to qualitatively and quantitatively evaluate the development of the osteogenic phenotype in osteoblastic cell cultures grown on bioactive glass and glass-ceramic surfaces. MC3T3-E1 cells, subclone 14, were cultured under an osteogenic condition for periods of up to 21 days on the following disc surfaces: Bioglass® 45S5 (bioactive glass), Biosilicate® (bioactive glass-ceramic), Biosilicate® as the material for scaffold preparation (Bio-sc, bioactive glass-ceramic), and borosilicate (bioinert glass). At days 7, 12, and 21 post-plating, cell morphology, mineralized matrix formation and the expression profile of genes associated with osteogenesis were evaluated. Epifluorescence of actin cytoskeleton and DAPI DNA stain revealed confluent cell cultures at day 7 for all groups, with progressive cell multilayering formation. The quantitative analysis of Alizarin red-stained cultures at day 21 revealed significantly enhanced mineralization in cultures grown on bioactive materials compared with the ones on borosilicate and the highest absorbance intensities for the Bio-sc group. Differential gene expression profiles were detected at the three time points evaluated in cultures grown on the bioactive materials in comparison with borosilicate, and on the glass-ceramics in comparison with Bioglass® 45S5. From the results presented, it can be concluded that changes in chemical characteristics of glass and glass-ceramic that may have an impact on their bioactivity index can affect the osteogenic potential and the gene expression profile of osteoblastic cells in vitro. The highest osteogenic activity on Bio-sc renders this material a good candidate for bone defect applications.

La détermination de la conformation d’une petite molécule liée à sa cible biologique nous permet de concevoir des drogues de propriété biologique améliorée. Cette détermination peut être difficile dû aux limitations techniques, comme indiqué par le débat sur la conformation de microtubule-lié d’une drogue anticancéreuse – paclitaxel. Les études utilisant la cristallographie des rayons X et la RMN du liquide ne peut pas fournir les informations détaillées sur la conformation espérée. La RMN du solide est un choix raisonnable en mesurant précisément des distances interatomiques de la molécule, et le marquage sélectif au tritium permet de mesurer une distance longue jusqu’à 14,4 Å avec une précision haute grâce au rapport gyromagnetique élevé de ce noyau. Aucune modification structurale n’a été rendue par le marquage au tritium. Ainsi notre sujet ayant pour l’objectif de déterminer la conformation bioactive du paclitaxel comporte la synthèse des 6 isotopomères de paclitaxel ditritiés sur les sites particuliers, suivie par la préparation des complexes de microtubule-paclitaxel marqué. L’analyse de RMN du tritium à l’état solide fournira les distances clés pour la détermination. 2 isotopomères ont été synthétisés par tritier le paclitaxel dibromé et coupler la baccatine tritiée et la chaîne latérale tritiée, respectivement. La stratégie synthétique conçue permet de réaliser la synthèse avec un rendement généralement satisfaisant et une bonne stéréosélectivité. Différentes méthodes de tritiation ont été testées, dont un enrichissement isotopique supérieur à 92% a été obtenu. La synthèse des autres isotopomères ainsi que des complexes de microtubule-paclitaxel est en cours de réaliser dans notre laboratoire. / The determination of the conformation of small molecule bound to its biological target would facilitate people to design improved drugs. This determination can be difficult due to technical limitations, as exemplified by the long standing debate on the microtubule-binding conformation of a natural anticancer drug – paclitaxel. Previous studies using X-ray crystallography and solution-state NMR failed to furnish direct information on the expected conformation. Solid-state NMR may help in this task by providing precise interatomic distances, and the selective labeling on different sites with tritium atoms enables accurate measurement of long-range distances (up to 14.4 Å) owing to the high gyromagnetic ratio of this nucleus, without any structural modification of the molecule. So our project aiming at illustrating the bioactive conformation of paclitaxel consists the syntheses of 6 different paclitaxel isotopomers bearing a pair of tritiums at specified positions, flowing by the preparations of corresponding microtubule-labeled paclitaxel complexes. The solid-state tritium NMR analyses of these complexes would provide key distances for determining the expected conformation. Up to now, 2 paclitaxel isotopomers have been prepared from labelling the dibrominated paclitaxel precursor and from coupling the tritiated taxane rings and the tritiated side chains, respectively. The synthetic strategy allowed us to realize the syntheses in generally high yield and good stereoselectivity. Different tritiation methods have been used, from which an isotopic enrichment of higher than 92% was obtained. The syntheses of other 4 isotopomers, together with the microtubule complexes are currently underway in our lab.

Natural product synthesis is one of the most creative branch of chemistry in terms of its boundless scope for innovation and has stimulated several generations of synthetic organic chemists. With advancement in the technology, particularly in the isolation and purification techniques, high-field NMR and X-ray crystallography, it has become fairly routine to isolate and assign the structures, high-field NMR and X-ray crystallography, it has become fairly routine to isolate and assign the structures, even to those complex molecules, which are available only in microscopic quantities from natural sources. Concurrently, one has witnessed tremendous advances in the availability of new synthetic methodologies with high region-, stereo-, and enantiocontrol for one or multiple C-C bond formations and rapid generation of molecular complexity. These developments have rekindled interest with total synthesis of natural products as platforms for testing and validating new reactions and strategies. Many natural products exhibit wide range of biological activities and thus provide good leads in drug discovery but quite often such bioactive compounds are obtained only in minute quantities from Nature. Hence, there is need to synthesize them to obtain requisite quantities and build diversity around their scaffold to further explore their therapeutic potential. Thus, natural product synthesis combines both intellectual challenge and possible application for human wellbeing. Our research group is actively engaged in the synthesis of structurally complex, bioactive natural products and as a part of this endeavour, total syntheses of several bioactive compounds have been accomplished in our laboratory in recent past. The present thesis has also evolved around the ongoing theme directed towards natural product synthesis and is organized under three chapters. Chapter I: Total synthesis of (+)-1S-Minwanenone Chapter II: Enantioselective total synthesis of the bioactive natural product (+)-Sch 642305. Chapter III: Enantiospecific total synthesis of 6-epi-(-)-Hamigeran B.

Materiais vítreos e vitrocerâmicos bioativos podem ser usados particulados ou como scaffolds em diferentes tratamentos de defeitos ósseos. Tratamentos térmicos que possibilitam o desenvolvimento de scaffolds a partir de composições de vidros bioativos introduzem fases cristalinas em sua estrutura amorfa com potencial impacto na bioatividade e biocompatibilidade do material. O objetivo do presente estudo foi avaliar, qualitativa e quantitativamente, o desenvolvimento do fenótipo osteogênico de culturas de células osteoblásticas sobre substratos vítreos e vitrocerâmicos bioativos. Células MC3T3-E1 foram cultivadas em condições osteogênicas por períodos de até 21 dias sobre superfícies de Bioglass® 45S5, de duas preparações de vitrocerâmica bioativa e altamente cristalina, Biosilicato® e Biosilicato® para scaffold, e de borosilicato (vidro bioinerte). Foram avaliados, nos períodos de 7, 12 e 21 dias, morfologia celular, formação de matriz mineralizada e expressão de genes relacionados à osteogênese. Os resultados mostraram confluência das culturas sobre as superfícies de vidros e vitrocerâmicas, com progressiva formação de multicamadas celulares. A quantificação de vermelho de Alizarina revelou aumento de mineralização para culturas sobre materiais bioativos, com os maiores valores para Biosilicato® para scaffold. Expressão diferencial de genes foi observada nos 3 períodos de culturas sobre os materiais vítreo e vitrocerâmicos bioativos em comparação ao vidro bioinerte e sobre as vitrocerâmicas em comparação ao vidro bioativo. Os resultados permitem concluir que modificações em aspectos químicos de materiais vítreos e vitrocerâmicos, com efeitos sobre sua bioatividade, resultam em alteração do potencial osteogênico e do perfil de expressão gênica de células osteoblásticas in vitro. A maior atividade osteogênica sobre o Biosilicato® para scaffold permite considerar esse material um potencial candidato para aplicações em defeitos ósseos. / Bioactive glasses and glass-ceramics have been used as bone substitutes in either particulate or scaffold forms. Various thermal treatments that allow the development of scaffolds from bioactive glasses may create varied proportions of new crystalline phases in the amorphous phase with a potential impact on the bioactivity and biocompatibility of the material. The aim of the present in vitro study was to qualitatively and quantitatively evaluate the development of the osteogenic phenotype in osteoblastic cell cultures grown on bioactive glass and glass-ceramic surfaces. MC3T3-E1 cells, subclone 14, were cultured under an osteogenic condition for periods of up to 21 days on the following disc surfaces: Bioglass® 45S5 (bioactive glass), Biosilicate® (bioactive glass-ceramic), Biosilicate® as the material for scaffold preparation (Bio-sc, bioactive glass-ceramic), and borosilicate (bioinert glass). At days 7, 12, and 21 post-plating, cell morphology, mineralized matrix formation and the expression profile of genes associated with osteogenesis were evaluated. Epifluorescence of actin cytoskeleton and DAPI DNA stain revealed confluent cell cultures at day 7 for all groups, with progressive cell multilayering formation. The quantitative analysis of Alizarin red-stained cultures at day 21 revealed significantly enhanced mineralization in cultures grown on bioactive materials compared with the ones on borosilicate and the highest absorbance intensities for the Bio-sc group. Differential gene expression profiles were detected at the three time points evaluated in cultures grown on the bioactive materials in comparison with borosilicate, and on the glass-ceramics in comparison with Bioglass® 45S5. From the results presented, it can be concluded that changes in chemical characteristics of glass and glass-ceramic that may have an impact on their bioactivity index can affect the osteogenic potential and the gene expression profile of osteoblastic cells in vitro. The highest osteogenic activity on Bio-sc renders this material a good candidate for bone defect applications.

The aim of this study was to evaluate the effect of replacing CaO by ZnO, MgO and SrO on a standard bioglass composition SiO2.CaO.Na2O.P2O5 on their thermal behavior and surface reactivity. The analyses showed that the substitution did not directly affect the events of mass loss. However, the reduction in Tg, was linear with oxide concentration. MgO strongly contributed to Tg reduction while SrO and ZnO had similar behavior. The simultaneous addition of all three oxides showed an antagonistic effect on the Tg. The crystallization temperature did not vary linearly with increasing concentration of oxides, once different crystalline phases were observed for each concentration and kind of oxides. The dissolution and precipitation processes did not show a direct dependence on the CaO substitution, being influenced by other variables. The dissolution process happened with the release of SiO4 4-, Zn2+ and Sr2+, but not Mg2+. At the same time, Ca2+, Mg2+ and PO4 3- were precipitated on the surfaces generating calcium phosphate layers rich in Mg2+ and CO3 2- with similar morphologies. / O objetivo neste trabalho foi avaliar o efeito da substituição do CaO por ZnO, MgO e SrO em um biovidro padrão de composição SiO2.CaO.Na2O.P2O5 sobre seu comportamento térmico e reatividade de superfície. As análises demonstraram que a substituição não afetou diretamente os eventos de perda de massa. No entanto, a redução da Tg foi linear com o aumento da concentração dos óxidos. O MgO foi aquele que mais contribuiu para a redução da Tg enquanto o SrO e ZnO tiveram um comportamento similar ao do próprio CaO. Ao contrário, a inclusão simultânea dos três óxidos apresentou um efeito antagonístico em relação a Tg. A temperatura de cristalização não variou linearmente com o aumento da concentração de óxidos, uma vez que fases cristalinas distintas foram observadas para cada concentração e tipo de óxido. Os processos de dissolução e precipitação não apresentaram uma dependência direta da substituição, sendo influenciados por outras variáveis. A dissolução aconteceu com a liberação de SiO4 4-, Zn2+ e Sr2+, exceto Mg2+. Ao mesmo tempo Ca2+, Mg2+ e PO4 3- foram precipitados sobre os biovidros produzindo camadas de fosfato de cálcio ricas em Mg2+ e CO3 2-, com morfologias similares.

Depuis plusieurs années, une nouvelle génération de matériaux appelés “matériaux intelligents” et définis par leur capacité d’adaptation à leur environnement, est intensément développée. Des systèmes sensibles à différents stimuli tels que le pH, la lumière, ou encore une force mécanique, impliquée dans un grand nombre de processus naturels, comme l’adhésion et la prolifération cellulaire, ont été rapportés. Ce travail de thèse a ainsi été dédié au développement de matériaux mécano-sensibles. Plus précisément de matériaux transformant une contrainte mécanique en un signal chimique, en mimant le processus physique utilisé par la nature, à savoir des changements conformationnels de protéines. Nous avons donc cherché à atteindre ce but en greffant covalemment des protéines ou des enzymes sur un substrat élastomère. Etirer le substrat devant induire des modifications de structure des protéines, conduisant ainsi à des modulations de leurs propriétés. / Since many years, a new generation of materials called « smart materials » and defined by their capacity to adapt to their environment is intensively developed. Systems sensitive to different stimuli such as pH, light or ionic strength have been reported. One of these stimuli can also be a mechanical force which is involved in many reactions in nature such as, cells adhesion and proliferation, tissues growing or even plants developments. The aim of my thesis was dedicated to the elaboration of mechano-responsive materials. More precisely, materials that transform a stretching constraint into a chemical signal by mimicking the physical processes used by nature, namely protein conformational changes. We planned to achieve this goal by covalently grafting proteins or enzymes onto a stretchable substrate or incorporating them into cross-linked polymer networks. Stretching these materials should induce protein conformational changes leading to modifications of their properties.

First, the effect of transition metal oxide (e.g., V2O5, Co2O3, etc.) on the physical properties (e.g., density, glass transition temperature (Tg), optical properties and mechanical properties) and chemical durability of a simplified borosilicate nuclear waste glass was investigated. Adding V2O5 in borosilicate nuclear waste glasses decreases the Tg, while increasing the fracture toughness and chemical durability, which benefit the future formulation of nuclear waste glasses. Second, structural study of ZrO2/SiO2 substitution in silicate/borosilicate glasses was systematically conducted by molecular dynamics (MD) simulation and the quantitative structure-property relationships (QSPR) analysis to correlate structural features with measured properties. Third, for bioactive glass formulation, mixed-network former effect of B2O3 and SiO2 on the structure, as well as the physical properties and bioactivity were studied by both experiments and MD simulation. B2O3/SiO2 substitution of 45S5 and 55S5 bioactive glasses increases the glass network connectivity, correlating well with the reduction of bioactivity tested in vitro. Lastly, the effect of optical dopants on the optimum analytical performance on atom probe tomography (APT) analysis of borosilicate glasses was explored. It was found that optical doping could be an effective way to improve data quality for APT analysis with a green laser assisted system, while laser spot size is found to be critical for optimum performance. The combined experimental and simulation approach adopted in this dissertation led to a deeper understanding of complex borosilicate glass structures and structural origins of various properties.

Agarwood mainly formed by Aquilaria species is an economically and pharmaceutically important natural product used for the production of incense, perfumes and traditional medicines in Asia. Endophytic bacteria are potentially important in producing pharmaceutical compounds found in the plants. The aim of this research is to isolate, classify and identify major endophytic bacteria groups associated with agarwood of Aquilaria crassna species in Khanh Hoa province, Vietnam. Agarwood samples were collected and surface-sterilized, and total endophytic bacteria were isolated on Tryptic Soy Agar by the spread plate method. Major bacterial groups were classified according to the Bergey’s system. The 16S rRNA gene fragments were amplified using PCR method, and bacterial isolates were identified using this gene sequence similarity based method. The results showed that from 0.121 g of agarwood, total 26 bacterial isolates were purified and divided into 7 separated groups, in which the group II of Gram-positive spore-forming bacteria was the most dominant. Especially, two dominant strains, T14 of group II, and T15 of group VII, were identified as Bacillus pumilus and Alcaligenes faecalis, respectively.!To our knowledge, it is the first time that biodiversity of bacterial endophytes associated with agarwood from Aquilaria crassna in Vietnam has been reported, which requires of further study to understand the relationship of endophytic bacteria to agarwood-producing Aquilaria crassna species as well as explore their potential applications towards the development of valuable bioactive compounds. / Trầm hương, chủ yếu được tạo ra từ các loài cây Dó (Aquilaria), là một sản phẩm tự nhiên có giá trị kinh tế và y học đã được sử dụng để sản xuất hương, nước hoa và các dược phẩm truyền thống ở châu Á. Vi khuẩn nội cộng sinh thực vật được cho là một nguồn quan trọng cho các dược phẩm có nguồn gốc thực vật. Mục tiêu của nghiên cứu này là nhằm phân lập, phân loại và định danh các nhóm vi khuẩn chính trên Trầm hương Khánh Hòa, Việt Nam. Các mẫu Trầm hương được thu nhận và vô trùng bề mặt dùng để phân lập vi khuẩn tổng số trên môi trường TSA bằng phương pháp trải đĩa. Các nhóm vi khuẩn chính được phân loại dựa theo hệ thống chuẩn Bergey. Đoạn gen mã hóa 16S rRNA được khuếch đại bằng phương pháp PCR, và các chủng vi khuẩn được định danh bằng phép so sánh độ tương đồng trình tự của đoạn gen này. Kết quả cho thấy từ 0,121 g mẫu trầm hương, chúng tôi đã phân lập được 26 chủng vi khuẩn và phân chúng vào 7 nhóm chính, trong đó nhóm II bao gồm các vi khuẩn Gram dương sinh bào tử là nhóm chiếm ưu thế nhất. Đặc biệt, có 2 chủng ưu thế là chủng T14 thuộc nhóm II và chủng T15 thuộc nhóm VII đã được định danh tương ứng là Bacillus pumilus và Alcaligenes faecalis.!Đây là nghiên cứu đầu tiên về đa dạng sinh học của các nhóm vi khuẩn chính trên Trầm hương Khánh Hòa. Vì vậy, cần có những nghiên cứu tiếp theo nhằm tìm hiểu mối quan hệ giữa các vi khuẩn nội cộng sinh với cây Dó bầu (Aquilaria crassna) tạo trầm cũng như khai thác những ứng dụng tiềm năng của các vi khuẩn này theo hướng phát triển các hoạt chất sinh học có giá trị.