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The birth of nanotechnology era has revolutionized materials science, catalysis and field of optoelectronics. Novel and unique phenomena emerge when material dimensions are reduced to ultra-small size regime and enter nanometre (2-100 nm) realm. Such novel materials are expected to replace bulk materials, offering lower cost of manufacturing and enabling progress in many areas such as solar cell, drug delivery, quantum communication and computing, catalysis and sensing applications. With the progress in nanomaterial synthesis and fabrication, the need for the state-of-art characterization techniques became obvious; such techniques help to establish a complete understanding of the nature and interactions of nanosized materials. In this thesis, the first part focuses on the synthesis of gold and ruthenium clusters, namely Au8, Au9, Au101, Ru3, Ru4 and AuRu3, using the well-established synthetic protocols in the literature. Apart from the standard lab-based characterization techniques such as nuclear magnetic resonance (NMR), UV-visible spectroscopy (UV-vis) and Fourier Transform Infra-red (FTIR), a less explored but useful technique far infra-red (far IR) spectroscopy, available at the Australian Synchrotron (AS), was employed to investigate the vibrational modes in these clusters. Peaks in the experimental far IR spectra were assigned unambiguously to specific vibrations by comparing with the ones generated via DFT calculations with the help of collaborators, group of Professor Gregory Metha, University of Adelaide. For the Au9 cluster, three significant gold core vibrations are observed at 157, 177 and 197 cm-1 in the experimental spectrum. In the case of the Ru3 cluster, only a single ruthenium core vibration is identified within the spectrum, at 150 cm-1 with the calculated force constant, k = 0.33 mdyne/Å. The Ru4 cluster exhibits two metal core vibrations at 153 and 170 cm-1 with force constants of 0.35 and 0.53 mdyne/Å, respectively. Substitution with a gold atom yielding a mixed metal AuRu3 cluster shifts the core transitions toward higher wavenumbers at 177 and 299 cm-1 with an increase in force constants to 0.37 and 1.65 mdyne/Å, respectively. This is attributed to the change in chemical composition and geometry of the metal cluster core. A combination of the DFT calculations and high quality synchrotron-based experimental measurements allowed the full assignment of the key transitions in these clusters. Next, these clusters were fabricated into heterogeneous catalysts by depositing on different metal oxide nanopowders. Synchrotron X-ray photoelectron spectroscopy (XPS) and X-ray absorption spectroscopy (XAS) studies were performed at the Australian Synchrotron and the Photon Factory synchrotron in Japan to investigate the electronic structure of Au8, Au9 and Au101 on TiO2 catalysts. The XPS analysis reveals that “as-deposited” Au8 and Au9 retain some un-aggregated clusters while Au101 show bulk-like gold. These findings are in line with TEM observations, where the aggregates (large particles, > 2 nm) of Au8, Au9 and Au101 are hardly seen under HRTEM. UV-visible diffuse reflectance spectroscopy (UV-vis DRS) studies show the absence of localised surface plasmon resonance (LSPR) peaks in these “as-deposited” clusters, suggesting they are below 2 nm in size. Importantly, the XAS spectrum of “as-deposited” Au9 clusters estimates that 60% of pure, un-aggregated Au9 clusters and 40% of bulk gold in the sample. Upon calcination under O2 and combined O2 and H2 (O2-H2), Au8, Au9 and Au101 clusters form larger nanoparticles (> 2 nm) with the appearance of LSPE peak in UV-vis DR spectra. In addition, majority of the phosphine ligands (that stabilise the gold core) dislodge and form phosphine oxide-like species by interacting with oxygen on the TiO2 surface. The third part focused on testing the catalytic performance of the supported Au8, Au9, Au101, Ru3, Ru4 and AuRu3 clusters on different TiO2, SiO2, ZnO and ZrO2 in benzyl alcohol oxidation. Au101-based catalysts display the highest catalytic activity with a turn-over frequency (TOF) up to 0.69 s-1. The high catalytic activity is attributed to the formation of large Au nanoparticles (> 2 nm) that coincides with the partial removal of capping ligands. Au8 and Au9 clusters which contain NO3- counter anions are found to be inactive in benzyl alcohol oxidation. Further work shows that the presence of NO3- species diminishes the catalytic activity. Monometallic ruthenium clusters, Ru3 and Ru4, are found to be inactive yet the bimetallic AuRu3 clusters are active in benzyl alcohol oxidation, suggesting the synergistic effect between ruthenium and gold metal. Investigation of catalytic testing parameters reveals that tuning selectivity of the product is possible through manipulating the reaction temperature. Finally, a joint experiment with Prof. Wojtek Wlodarski’s group at RMIT, Melbourne was undertaken to test the sensing ability of Au9 clusters for hydrogen detection. Au9 clusters were deposited onto radio-frequency (RF) sputtered WO3 films at two different concentrations; 0.01(S1) and 0.1(S2) mg/mL. It was found that the optimal temperatures for sensor S1 and S2 were 300 °C and 350 °C, respectively. The sensor with lower Au9 concentration (S1) displays a faster response and recovery time, and a higher sensitivity toward H2. HRTEM studies reveal that the sensor S1 contain a significant population of sub-5 nm Au nanoparticles which might be responsible for a faster rate of H2 adsorption and dissociation. The key finding in this study suggest that the addition of catalytic layer such as ultra-small Au9 clusters results in improved sensitivity and dynamic performance (response and recovery time) of H2 sensors. In summary, this thesis demonstrated that cluster-based nanomaterials have wide range of applications spanning from catalysis to sensing. Further improvements in material synthesis and use of multiple complimentary characterization techniques allowed better understanding of the nature of the key active species (metal nanoparticles) assisting design of catalysts and sensors with enhanced performance.

In recent years, ionic liquids have emerged as one of the most promising alternatives to traditional volatile organic solvents when it comes to catalytic reactions. Stable metal nanoparticles suspended in ionic liquids, are catalytic systems that mimic aspects of nanoparticles on solid supports, as well as traditional metal-ligand complexes used in organometallic catalysis. While alkylimidazolium ionic liquids, with or without appended functionalities, have been earmarked as the media of choice for the dispersal of nanoparticles, the tetraalkylphosphonium family of ionic liquids has largely been overlooked, despite their facile synthesis, commercial availability, chemical resemblance to surfactants traditionally used for nanoparticle stabilization, stability under basic conditions, and wide thermal as well as electrochemical windows. It is only recently that a number of research groups have given this family of novel alternative solvents the recognition it deserves, and used metal NPs dispersed in these ILs as catalysts in reactions such as hydrogenations, oxidations, C-C cross-couplings, hydrodeoxygenations, aminations, etc. This thesis investigates the synthesis, characterization, and catalytic applications of transition metal nanoparticles in tetraalkylphosphonium ionic liquids. The ionic liquids described in this thesis functioned as the reaction media as well as intrinsic nanoparticle stabilizers during the course of the catalytic processes. Metallic nanoparticles synthesized in these ionic liquids proved to be stable, efficient and recyclable catalytic systems for reactions of industrial significance, such as hydrodeoxygenations, hydrogenations, and oxidations. It was demonstrated that stability and catalytic activity of these systems were profoundly dependent on the properties of the ionic liquids, such as the nature of the alkyl chains attached to the phosphonium cation, and the coordination ability of the anion. Since heat-induced nanoparticle sintering was a problem, a procedure was devised to redisperse the aggregated and/or sintered nanoparticles so as to restore their initial sizes and catalytic activities. The presence of halides as counter-ions in tetraalkylphosphonium ionic liquids was seen to facilitate the oxidative degradation of agglomerated metal nanoparticles, which was a key step in our redispersion protocol. It was demonstrated that this redispersion protocol, when applied to heat-sintered nanoparticles, produces nanostructures that resemble the freshly made nanoparticles not only in size but also in catalytic activities. The presence of by-products from the borohydride reduction step used to generate the nanoparticles in the ionic liquids actually facilitated multistep reactions such as hydrodeoxygenation of phenol, where a Lewis Acid was necessary for a dehydration step. Finally, an attempt was made to utilize nanoparticles of an earth-abundant metal (iron) as a hydrogenation catalyst in a variety of alternative solvents (including tetraalkylphosphonium ionic liquids) in order to enhance the “green”ness of the catalyst systems. X-ray absorption spectroscopy (XAS) of the iron- nanoparticles/ionic liquid systems at the Canadian Light Source revealed significant details about the chemical interaction between iron and the ionic liquid matrices, which added to our understanding of this neoteric family of catalysts.

This thesis describes an extensive investigation of the O- to C-carboxyl transfer of oxazolyl carbonates using isothioureas as Lewis base catalysts. The structural requirements of simple bicyclic amidines and isothioureas to promote this transformation have been investigated, showing that the catalytic efficiency and product distribution of these reactions are markedly affected by the catalyst structure. The optimal isothiourea catalyst was efficiently applied to the rearrangement of a wide range of oxazolyl, benzofuranyl and indolyl carbonates. The structural motif of tetrahydropyrimidine-based isothioureas has then been evaluated in order to develop an asymmetric variant of the O- to C-carboxyl transfer of oxazolyl carbonates. A number of chiral isothioureas bearing stereodirecting groups in C(2) and/or C(3) have been synthesised and used in this rearrangement, showing that a C(2)-stereodirecting unit is essential for high enantioselectivity, with an additional C(3)-substituent increasing the reactivity. The optimal chiral C(2)-substituted isothioureas identified are general and efficient asymmetric catalysts for O- to C-carboxyl transfer of oxazolyl carbonates, generating a quaternary stereocentre with high enantioselectivity (up to 94% ee). The origin of the enantioselectivity of this process has been probed mechanistically and rationalised computationally. Having gained an insight into the structural motifs of isothioureas required to impart good catalytic activity and asymmetric induction in the O- to C-carboxyl transfer of oxazolyl carbonates, the mechanism of this reaction was probed using kinetic and mechanistic experiments. ¹⁹F NMR spectroscopic analysis allowed the evolution of product, by-product and intermediate throughout the reaction to be monitored while a number of crossover and stability experiments gave additional information about the catalytic cycle. Extension to a related system has been demonstrated with the O- to C-carboxyl transfer of furanyl carbonates, producing a mixture of α- and γ-butenolides depending on the nature of the Lewis base employed. DMAP gives a mixture of both regioisomers with a preference for the α-regioisomer, while NHCs lead predominantly to the γ-regioisomer. Chiral isothioureas have been used to promote this rearrangement, giving the major α-regioisomer with good enantioselectivity (up to 83% ee). To quantify the different reactivities observed with these isothioureas, their nucleophilicities and Lewis basicities using the stopped-flow technique have been determined. Finally, model studies toward the synthesis of the natural product calcaridine A, using the methodology developed herein, have been investigated.

Biodiesel has shown great promise to supplement the fossil diesel since it is a renewable energy resource and is environmentally friendly. However, the major obstacle to biodiesel large scale commercialization is the high production cost; so converting glycerol, the by-product of a biodiesel process, into value-added products is an efficient way to promote biodiesel production. 1,2-propanediol (1,2PD), also known as propylene glycol, is an important commodity chemical used for many applications such as polyester resins, liquid detergents and anti-freeze. It can be produced via dehydration of glycerol into acetol followed by hydrogenation of acetol into 1,2PD using a bi-functional catalyst. Currently high pressure gaseous hydrogen added for hydrogenation causes safety issues as well as additional costs of hydrogen purchasing, transportation and storage. Therefore, the utilization of the in situ hydrogen produced by steam reforming of a hydrogen carrier could be a novel route for this process. In this work, processes of glycerol hydrogenolysis to produce 1,2PD have been developed using different hydrogen sources, i.e. molecular hydrogen and in situ hydrogen produced by steam reforming. Three different preparation methods were attempted to prepare a Cu/ZnO/Al2O3 catalyst in a glycerol hydrogenolysis process, which were oxalate gel-coprecipitation, Na2CO3 coprecipitation and impregnation. The catalyst prepared by oxalate gel-coprecipitation showed the highest activity for production of 1,2PD. It was also found that the addition of alumina did not only improve the activity but also enhanced the stability of the Cu/ZnO catalyst as shown by the catalyst recycling experiments. The morphological and chemical properties of the catalysts were characterized via XRD, NH3 TPD, TGA and TEM. Compared with other preparation methods, the Cu/ZnO/Al2O3 catalyst prepared by oxalate gel-coprecipitation exhibited a well-mixed form for all the metals as suggested by the XRD and TGA results; the particle size of the Cu/ZnO/Al2O3 catalyst was smaller as shown in the XRD and TEM results, and also based on NH3 TPD analysis the Cu/ZnO/Al2O3 catalyst showed stronger acidic sites. When Ni was loaded onto the Cu/ZnO/Al2O3 catalyst by oxalate gel-coprecipitation, it was found that the activity for acetol hydrogenation was improved but the overall glycerol hydrogenolysis reaction was slower. This was mainly due to the reduced amount of strong acidic sites caused by the addition of Ni as observed from the NH3 TPD results. 2wt% Pd supported on a Cu/MgO/Al2O3 catalyst was used in this process. Higher reaction rate and higher 1,2PD selectivity could be obtained compared with a Cu/ZnO/Al2O3 catalyst. However, a significant deactivation was observed when the spent catalyst was used. The catalyst deactivation was mainly due to catalyst sintering during the reaction resulting in a larger particle size as suggested by XRD results. The activation energies for the glycerol hydrogenolysis reaction using Cu/ZnO/Al2O3 and Pd supported on Cu/MgO/Al2O3 catalysts have been calculated. The activation energy was calculated to be 69.39kJ/mole using a Cu/ZnO/Al2O3 catalyst and 113.62kJ/mol using a Pd supported on Cu/MgO/Al2O3 catalyst. It is suggested that the reaction was chemically kinetically controlled using both catalysts and the reaction using the Pd supported on Cu/MgO/Al2O3 catalyst was more temperature dependent. It was found that the 1,2PD selectivity was strongly dependent on hydrogen pressure. The low 1,2PD selectivity at lower hydrogen pressure was due to the formation of by-products caused by side reactions with acetol. The kinetic data of acetol hydrogenation suggested that the acetol hydrogenation step was significantly faster than the overall reaction and hence the glycerol dehydration step was the rate-determining-step. In the glycerol hydrogenolysis process using in situ hydrogen, the activities of the Cu/ZnO/Al2O3 catalysts prepared by different methods were determined and the experimental results show that the catalyst prepared by oxalate gel-coprecipitation has the best catalytic activity for glycerol conversion and 1,2PD selectivity. With Ni loaded onto a Cu/ZnO/Al2O3 catalyst, the 1,2PD selectivity was improved and the glycerol conversion was lower. It might be because Ni could improve the steam reforming activity to produce more hydrogen, but due to the reduced strong acidic sites based on the NH3 TPD results glycerol conversion was decreased. Cu/MgO/Al2O3 catalysts prepared by oxalate gel-coprecipitation were used in this process and the activity was found to be higher, i.e. higher glycerol conversion and 1,2PD selectivity, compared with the Cu/ZnO/Al2O3 catalyst due to a higher amount of acidic sites based on the NH3 TPD results; the Cu/Mg/Al composition was optimized. When Ni was added into a Cu/MgO/Al2O3 catalyst, it was found that with only 1mole% Ni loaded, the glycerol conversion was lower than that without Ni loaded and the 1,2PD selectivity was slightly improved; when the Ni loading was increased to 5mole%, the catalyst was almost completely inactive, since when 5mole% Ni was loaded, the acidic sites were almost completely eliminated as observed from the NH3 TPD results. When Pd was added onto a Cu/MgO/Al2O3 catalyst the 1,2PD selectivity was significantly improved. When Pd was loaded, more surface hydrogen atoms were provided as observed from the H2 TPD results. Cu/ZnO/Al2O3 and Cu/MgO/Al2O3 catalysts have been recycled and reused to investigate the stability of the catalysts. All the catalysts were deactivated after they were recycled and reused, since it was apparent that catalyst sintering occurred during the reaction resulting in a larger particle size based on the XRD results. The deactivation of the spent catalyst was also possibly due to the formation of carbonate when the metals were contacted with CO2 which was formed via steam reforming.

The regioselectivity in Pd(0)-catalyzed direct arylation of pyrrole, thiophene, and indole can be improved by blocking some of the reactive sites with a chloride group, leading to increased yields of the desired regioisomers. Competition experiments and computational studies show that the blocking group also activates the substrates toward arylation. Due to the activated nature of chlorinated heteroaromatics, rare and sought after regioisomers, such as 3-arylthiophenes, can be obtained under mild conditions in good yields. Chlorine-bearing thiophenes arylated at C3 and C4 have the potential to undergo controlled regioregular polymerization under conditions developed in the field of polythiophene chemistry. Mechanistic studies support the hypothesis that the arylation of the substrates under investigation likely proceeds via the CMD transition state.

Fluorocarbons (FCs) and their derivatives (FCDs) are heavily relied on due to their wide range of uses (e.g. solvents, surfactants, refrigerants, and pharmaceuticals). Currently, FCs and FCDs are produced on an industrial scale via energy-intensive processes, using hazardous materials. Hence, new catalytic chemical technologies are required to provide cleaner and greener synthetic routes to partially fluorinated materials. The exploration of fundamental organofluorometallic chemistry of base metals, such as nickel, has potential to advance the development of novel catalytic processes towards this end. It has been established previously that zero-valent nickel complexes have the ability to efficiently catalyze the hydrodimerization of polyfluoroalkenes. The reactivity of the intermediate polyfluoronickelacycles was found to be influenced by modifications in the ligand sphere. Furthermore, an increase in oxidation state of the central metal atom was proposed as an additional strategy to increase the reactivity of the M-RF bond. In this thesis, through variation of the ligand environment and oxidation state of nickel, we have further developed the chemistry of high-valent polyfluoronickelacycles. Synthesis and characterization (NMR, EPR, UV/Vis, IR spectroscopy and electrochemistry) of new trivalent polyfluoronickelacycles are described as well as attempts to generate the corresponding tetravalent cations. Attempts to induce nucleophilic insertion of acetonitrile into the Ni-RF bond were also investigated herein. Challenges were encountered with the isolation of the tetravalent cations due to decomposition to the corresponding divalent nickelacycle.

This thesis is a dissertation to support the development of new domino pericyclic oxy-Cope/ene/Claisen/Diels-Alder reaction, diversity oriented synthesis of PPAPs scaffold via sequential one pot cascade reaction and ethyl aluminum sesquichloride catalyzed highly hindered Diels-Alder reaction. The first part concentrates on the domino pericyclic oxy-Cope/ene/Claisen/Diels-Alder reaction. As a result of this study, we have developed a general methodology for rapidly constructing complex diterpenes and discovered a thermal oxy-Cope/ene/Claisen/Claisen rearrangement, applied to the synthesis of trans decalin benzofurans. The second part involved the development of an efficient synthetic approach towards bicyclo[3.3.1]nonenone core found in many natural products, via a sequential Diels-Alder/gold(I)-catalyzed 6-endo-dig cyclization and its application to the synthesis of a diversified library of PPAPs. Finally, we have developed an efficient synthetic methodology for the formation of cyclohexene rings bearing quaternary carbon centers via an ethyl aluminum sesquichloride mediated highly hindered Diels-Alder reaction. This method solved an important problem encountered in the synthesis of many natural products including PPAPs. This methodology opened new opportunities in the total synthesis of PPAPs.

Transition metal-catalyzed olefin hydroacylation represents an atom-economical approach for the synthesis of valuable ketone products. To date, the intermolecular variant of this reaction suffers from several drawbacks, which include limited substrate scope, poor reactivity and/or regioselectivity for non-activated, non-chelating alkene substrates, and competitive reductive decarbonylation pathways that lead to catalyst decomposition. Herein, we report the linear-selective intermolecular hydroacylation of a wide range of electronically diverse olefins with salicylaldehydes employing catalyst loadings as low as 2 mol%. A unique reactivity profile is observed for the chiral C2-symmetric phosphoramidite ligand employed in our catalyst system, and thus, we outline progress made towards the synthesis of new phosphoramidite ligands. We have applied our methodology in the total synthesis of nine octaketide natural products belonging to the dothiorelone, cytosporone, and phomopsin families. Due to recent reports demonstrating the anticancer activity of cytosporone B (Csn-B), we will also discuss progress towards the synthesis of Csn-B analogues.

The development of new, improved methods for forming carbon–carbon and carbon–heteroatom bonds is the basic goal in synthetic organic chemistry. In the Lautens group, many recent advances have been made using late transition metals such as rhodium and palladium. One such research project involves the synthesis of indoles through tandem C–N and C–C coupling reactions using gem-dibromoolefin starting materials, and this area serves as a starting point for the research described. Chapter 1 describes a method by which the tandem use of gem-dibromoolefins can be halted to give intramolecular monocoupling reactions, maintaining one of the carbon–bromine bonds which can serve as a useful handle for further functionalization. The use of copper as a catalyst is key to this reaction, as it features a unique mechanism for carbon–heteroatom bond formation. Benzofurans and benzothiophenes can be prepared by this method. Chapter 2 describes the synthesis of 2-bromoindoles using an intramolecular Buchwald–Hartwig amination of gem-dibromoolefins. It is found that the products are more reactive towards palladium(0) than the starting material, and the use of a bulky phosphine ligand which facilitates reversible oxidative addition is required. This represents one of the first catalytic applications of this step in synthesis. Chapter 3 further explores the concept of reversible oxidative addition in a novel carbohalogenation reaction of alkenes. Aryl iodides tethered to alkenes are treated with a palladium(0) catalysts, which can undergo the basic steps of oxidative addition, carbopalladation, and novel sp2 carbon–iodine reductive elimination. This process is remarkably simple in concept, and is a waste-free, atom economically method for preparing new carbon–carbon bonds. Chapter 4 discusses various limitations to the carbohalogenation methodology, and seeks to overcome these problems. The use of aryl bromide starting materials can be accomplished by adding an iodide source to the reaction, allowing halide exchange of palladium(II) intermediates to occur. Intermolecular and asymmetric variants are also explored. Computational studies are discussed which reveal useful mechanistic details of the catalytic cycle, and this information is used in the development of novel phosphine ligands.