Phospholipid bilayers are the principal component of the cell membrane. Membranes ensure the maintenance of processes required for cells’ survival by regulating the inflow and outflow of nutrients and other molecules using membrane proteins. However, studying the cell membrane is challenging because of its complexity and small size. In-vitro membrane models made of phospholipids are important tools for studying membranes. In this work, we aim to study the fluidity of phospholipid bilayers of different lipids using general polarization (GP) of the fluorescent probe Laurdan as a measure. We will focus on the relative importance of head groups and fatty acids in the phospholipid. For this purpose, we are synthesizing chimeric lipids with the common human head group phosphocholine paired with bacterial fatty acids. We will compare the response of the human and chimeric lipids to temperature and biofuels to ascertain whether improved stress tolerance can be obtained with the chimeras.

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京都大学 / 0048 / 新制・課程博士 / 博士(工学) / 甲第18596号 / 工博第3957号 / 新制||工||1608(附属図書館) / 31496 / 京都大学大学院工学研究科化学工学専攻 / (主査)教授 山本 量一, 教授 秋吉 一成, 准教授 谷口 貴志, 教授 大嶋 正裕 / 学位規則第4条第1項該当 / Doctor of Philosophy (Engineering) / Kyoto University / DGAM

京都大学 / 0048 / 新制・課程博士 / 博士(理学) / 甲第19473号 / 理博第4133号 / 新制||理||1594(附属図書館) / 32509 / 京都大学大学院理学研究科物理学・宇宙物理学専攻 / (主査)講師 市川 正敏, 教授 佐々 真一, 教授 山本 潤 / 学位規則第4条第1項該当 / Doctor of Science / Kyoto University / DFAM

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To solve the programmability issue of membrane computing models, the automatic design of membrane systems is a newly initiated and promising research direction. In this paper, we propose an automatic design method, Permutation Penalty Genetic Algorithm (PPGA), for a deterministic and non-halting membrane system by tuning membrane structures, initial objects and evolution rules. The main ideas of PPGA are the introduction of the permutation encoding technique for a membrane system, a penalty function evaluation approach for a candidate membrane system and a genetic algorithm for evolving a population of membrane systems toward a successful one fulfilling a given computational task. Experimental results show that PPGA can successfully accomplish the automatic design of a cell-like membrane system for computing the square of n ( n >/= 1 is a natural number) and can find the minimal membrane systems with respect to their membrane structures, alphabet, initial objects, and evolution rules for fulfilling the given task. We also provide the guidelines on how to set the parameters of PPGA.

This dissertation investigates the behavior of the Escherichia Coli mechanosensitive (MS) channel MscL, when incorporated within a droplet interface bilayer (DIB). The activity of MscL channels in an artificial DIB system is demonstrated for the first time in this document. The DIB represents a building block whose repetition can form the basis to a new class of smart materials. The corresponding stimuli-responsive properties can be controlled by the type of biomolecule incorporated into the lipid bilayer, which is in the heart of this material. In the past decade, many research groups have proven the capability of the DIB to host a wide collection of natural and engineered functional biomolecules. However, very little is known about the mechano-electrical transduction capabilities of the DIB. The research present herein specifically seeks to achieve three direct goals: 1) exploring the capabilities of the DIB to serve as a platform for mechano-electrical transduction through the incorporation of bacterial MscL channels, 2) understanding the physics of mechano-electrical transduction in the DIB through the development of theoretical models, and 3) using the developed science to regulate the response of the DIB to a mechanical stimulus. MscL channels, widely known as osmolyte release valves and fundamental elements of the bacterial cytoplasmic membrane, react to increased tension in the membrane. In the event of hypo-osmotic shocks, several channels residing in the membrane of a small cell can generate a massive permeability response to quickly release ions and small molecules, saving bacteria from lysis. Biophysically, MscL is well studied and characterized primarily through the prominent patch clamp technique. Reliable structural models explaining MscL's gating mechanism are proposed based on its homolog's crystal structure modeling, which lead to extensive experimentation. Under an applied tension of ~10 mN/m, the closed channel which consists of a tight bundle of transmembrane helices, transforms into a ring of greatly tilted helices forming an ~8 A water-filled conductive pore. It has also been established that the hydrophobicity of the tight gate, positioned at the intersection of the inner TM1 domains, determines the activation threshold of the channel. Correspondingly, it was found that by decreasing the hydrophobicity of the gate, the tension threshold could be lowered. This property of MscL made possible the design of various controllable valves, primarily for drug delivery purposes. For all the aforementioned properties and based on its fundamental role of translating cell membrane excessive tensions into electrophysiological activities, MscL makes a great fit as a mechanoelectrical transducer in DIBs. The approach presented in this document consists of increasing the tension in the lipid bilayer interface through the application of a dynamic mechanical stimulus. Therefore, a novel and simple experimental apparatus is assembled on an inverted microscope, consisting of two micropipettes (filled with PEG-DMA hydrogel) containing Ag/AgCl wires, a cylindrical oil reservoir glued on top of a thin acrylic sheet, and a piezoelectric oscillator actuator. By using this technique, dynamic tension can be applied by oscillating one droplet, producing deformation of both droplets and area changes of the DIB interface. The tension in the artificial membrane will cause the MS channels to gate, resulting in an increase in the conductance levels of the membrane. The increase in bilayer tension is found to be equal to the sum of increase in tensions in both contributing monolayers. Tension increase in the monolayers occurs due to an increase in surface area of the constant volume aqueous droplets supporting the bilayer. The results show that MS channels are able to gate under an applied dynamic tension. Interestingly, this work has demonstrated that both electrical potential and surface tension need to be controlled to initiate mechanoelectric coupling, a property previously not known for ion channels of this type. Gating events occur consistently at the peak compression, where the tension in the bilayer is maximal. In addition, the experiments show that no activity occurred at low amplitude oscillations (< 62.5um). These two findings basically present an initial proof that gating is occurring and is due to the mechanical excitation, not just a random artifact. The role of the applied potential is also highlighted in this study, where the results show that no gating happens at potentials lower that 80 mV. The third important observation is that the frequency of oscillation has an important impact of the gating probability, where no gating is seen at frequencies higher than 1 Hz or lower than 0.1 Hz. Each of the previous observations is addressed separately in this research. It was found that the range of frequencies to which MscL would respond to in a DIB could be widened by using asymmetrical sinusoidal signals to stimulate the droplets. By increasing the relaxation time and shorting the compression time, a change in the monolayer's surface area is achieved, thus higher tension increase in the bilayer. It was also found that a high membrane potential assists in the opening of MscL as the droplets are stimulated. This is due to the sensitivity of MscL to the polarity of the signal. By using the right polarity the channel could be regulated to become more susceptible to opening, even at tensions lower than the threshold. Finally, it was demonstrated, for the first time, that MscL would gate in asymmetric bilayers without the need to apply a high external potential. Asymmetric bilayers, which are usually composed from different lipids in each leaflet, generate an asymmetric potential at the membrane. This asymmetric potential is proven to be enough to cause MscL to gate in DIBs upon stimulation. / Ph. D.

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Ce travail est une contribution à l’étude du rôle des plaques bipolaires sur le fonctionnement des piles à combustible à membrane, en particulier l’effet du design de ces plaques en tant que distributeur de gaz réactifs, et la recherche de matériaux métalliques pouvant remplacer les matériaux carbonés conventionnels. Les performances des piles à combustible sont entre autres limitées par certains problèmes liés à la thermohydraulique : l'assèchement des membranes et l'engorgement en eau des canaux de distribution des gaz. Ces performances sont limitées aussi par le type des membranes, et des plaques bipolaires utilisées. Ces travaux de thèse traitent essentiellement une comparaison entre des membranes ainsi que des plaques bipolaires. Nous avons également étudié les problèmes liés à l’humidité, en particulier l’'engorgement en eau dans les canaux d'une pile à combustible par des essais de visualisation : l’évacuation de l’eau liquide dépend très fortement de la gravure des plaquesDe plus, nous avons recherché des matériaux métalliques candidats à la réalisation de plaques bipolaires pour remplacer le graphite, encombrant et couteux. Deux matériaux ont été étudiés : l’acier inox 316L et l’alliage nickel-tungstène déposé sur une plaque de cuivre. L’inox 316 L, utilisé comme matériau pour les plaques bipolaires, montre une bonne résistance aux conditions agressives régnant au sein de la pile à combustible à membrane, comme l’ont montré des essais réalisés pendant près de 1000 heures / This work is a contribution to the study of the role of bipolar plates on the operation of fuel cell membrane, in particular the effect of the design of these plates as a distributor of reactive gases, and the search for metallic materials that can replace conventional carbon materials .The performance of fuel cells are limited by , among other problems related to thermal hydraulics : dewatering membranes and waterlogging distribution channels gas . This performance is also limited by the type of membrane and bipolar plates used . This thesis deal primarily a comparison between membranes and bipolar plates . We also investigated problems related to moisture , especially the '' water flooding in the channels of a fuel cell by visualization tests : the evacuation of liquid water is highly dependent on the etching platesIn addition, we have searched for metallic materials candidates embodiment to replace the bipolar plates of graphite, cumbersome and costly . Two materials have been studied : 316L stainless steel and the nickel - tungsten deposited on a copper plate . The 316 L stainless steel , used as material for bipolar plates , shows good resistance to aggressive conditions within the fuel cell membrane, as shown by tests carried out over nearly 1000 hours