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Enzymatic deinking effectiveness and mechanismsWelt, Thomas 10 1900 (has links)
No description available.
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The assessment of soil microbial and plant physiological changes during the treatment of soil containing bromacil, tebuthiuron and ethidimuron / M. de BeerDe Beer, Misha January 2005 (has links)
Increased amounts of pesticide production and application of pesticides for agriculture,
plant protection and animal health has resulted in soil, water and air pollution,
consequently relating a serious risk to the environment and also to human health.
Pesticides include several groups of compounds, herbicides, insecticides, rodenticides and
fumigants consisting of several hundred individual chemicals. Herbicides are an integral
pan of modem agriculture and for industries requiring total vegetation control. Most
herbicides are soil applied and more and more concern is raised that herbicides not only
affect target organisms but also the microbial community present in soil. The ESKOM
sub-station Zeus, in Mpumalanga (South Africa) used to apply an industrial weed control
program for the eradication of vegetation, which led to the contamination of soil by
several herbicides. These herbicides consisted of Bromacil, Tebuthiuron and Ethidimuron
which are all photosynthesis inhibitors, more specifically, they disrupt the plastoquinone
protein during electron transport at photosystem I1 (PSII). In this study the effect of biostimulation
and bio-augmentation of a specific bioremediation agent (B350) as prescribed
by ESKOM, on residual herbicides, Bromacil, Tebuthiuron and Ethidimuron was
evaluated by monitoring the soil physical and chemical properties, microbial attributes,
including potential microbial activity and community structure, as well as the
physiological effect experienced by plants (Cynodoh dactylon and Zea mays). Results
from soil physical and chemical analyses were correlated with results obtained for the
functional and structural diversity of microbial communities. All results were investigated
through statistical and multivariate analysis and the most prominent soil physical and
chemical parameters that influence the biological and biochemical properties of the soil
were identified. Results obtained from this study indicated that there were no significant
difference (p < 0.05) between the treatments, with bioremediation agent, irradiated agent
and without the agent based on results obtained from soil microbial properties and plant
physiology. Before the trial started the uncontaminated soil showed an active microbial
function, characterised by dehydrogenase, urease and arylsulphatase activity, but
community structure was not very diverse. The contaminated soil, irradiated contaminated
soil and silica sand showed less enzymatic function and was characterised by
phospholipid fatty acid groups, mid-branched saturated fatty acids, terminally branched
saturated fatty acids, normal saturated fatty acids and monosaturated fatty acids which are
indicative of microorganisms that survive better in harsh environments. Three weeks after
the addition of the specific bioremediation took place, the uncontaminated soil showed an
increase in P-glucosidase activity and percentage organic carbon (%C), which could be a
result of the presence of available plant material. Furthermore, an increase in major PLFA
groups were seen, suggesting that an increase in diversity within the soil community
occurred. The contaminated soil, irradiated contaminated soil and silica sand once again
was characterised by a low microbial function and diversity, showing no improvement.
Fluorescence data clearly show a decline in PS 11 function that result in the decline of the
rate of photosynthesis, which was seen from COz gas exchange rates. Furthermore, the
decrease in photosynthetic activity after three weeks was too severe to supply additional
information about the mechanism within photosynthesis or the photoprotective
mechanisms. A detailed study was conducted in which a 3: 1 dilution of contaminated soil
with silica sand, was also monitored for changes within plant physiology. Results revealed
that inhibition of PS I1 function already takes place within a few days time and the decline
in photosynthesis is as a result of electron transport that does not supply adenosine
triphosphate (ATP) and P-nicotinamide adenine dinucleotide (NADPH) to the Calvin
cycle (or Reductive Pentose Phosphate pathway). It does not appear that rubulose-1,sbisphosphate
carboxylase-oxygenase (Rubisco) is affected within the Calvin cycle. As a
result of PS I1 function failure, reaction centres are damaged by the production of harmful
singlet oxygen and photoprotective mechanisms (xanthophyll cycle) can not be activated.
Thus, except for dealing with ineffective electron transport, additional damage is caused
to physiological functions. After six weeks a decrease in the estimated viable biomass for
all growth mediums was found. Results of the of trans- to cis- monoenoic fatty acids and
cyclopropyl fatty acids to their monoenoic precursors ratios indicated that the soil
microbial community for the contaminated growth mediums, all experienced nutritional
stress throughout this trail. The specific bioremediation agent (B350) used, seemed to
have no effect on the microbial function and community structure within soil and as agent
had no effect on the residual herbicides or the plant physiology which experienced an
extreme decline in major metabolic functions. / Thesis (M. Environmental Science)--North-West University, Potchefstroom Campus, 2
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Soil microbial community function and structure as assessment criteria for the rehabilitation of coal discard sites in South Africa / Sarina ClaassensClaassens, Sarina January 2003 (has links)
Mining activities cause severe disturbance to the soil environment in terms of soil quality
and productivity and are of serious concern worldwide. Under South African legislation,
developers are required to ecologically rehabilitate damaged environments. The application
of agronomic approaches for the rehabilitation of coal discard sites has failed dismally in
the arid areas of southern Africa. It is obvious that compliance with mitigation and
rehabilitation requirements cannot be enforced without a thorough understanding of the
ecological principles that ensure ecological stability and subsequent sustainability of soil
ecosystems. Soil micro organisms are crucial role-players in the processes that make energy
and nutrients available for recycling in the soil ecosystem. Poor management practices and
other negative impacts on soil ecosystems affect both the physical and chemical properties
of soil, as well as the functional and structural properties of soil microbial communities.
Disturbances of soil ecosystems that impact on the normal functioning of microbial
communities are potentially detrimental to soil formation, energy transfers, nutrient
cycling, plant reestablishment and long-term stability. In this regard, an extensive overview
of soil properties and processes indicated that the use of microbiological and biochemical
soil properties, such as microbial biomass, enzymatic activity and the analysis of microbial
community structure by the quantification of specific signature lipid biomarkers are useful
as indicators of soil ecological stress or restoration properties because they are more
responsive to small changes than physical and chemical characteristics. In this study, the
relationship between the physical and chemical characteristics and different biological
indicators of soil quality in the topsoil covers of seven coal discard sites under
rehabilitation in South Africa, as well as three reference sites was investigated. Through the
assimilation of basic quantitative data and the assessment of certain physical, chemical and
biological properties of the topsoil covers obtained from the various coal discard sites as
well as the reference sites, the relative success or progress of rehabilitation and the possible
correlation between the biological indicators of soil quality and the establishment of self sustaining
vegetation covers was determined. Results from soil physical and chemical
analyses and percentage vegetation cover were correlated with the results obtained for the
functional and structural diversity of microbial communities at the various sites. All results
were investigated through statistical and multivariate analysis and the most prominent
physical and chemical parameters that influence the biological and biochemical properties
of the soil and possibly the establishment of self-sustainable vegetation cover on these
mine-tailing sites were identified. Results obtained from this study indicated no significant
difference (p>0.05) between the various discard sites based on conventional
microbiological enumeration techniques. However, significant differences (p<0.05) could
be observed between the three reference sites. All enzymatic activities assayed for the
rehabilitation sites, with the exception of urease and alkaline phosphatase displayed a
strong, positive association with the organic carbon content (%C). Ammonium
concentration had a weak association with all the enzymes studied and pH only showed a
negative association with acid phosphatase activity. A positive association was observed
between the viable microbial biomass, vegetation cover and the organic carbon content,
ammonium, nitrate and phosphorus concentrations of the soil. The various rehabilitation
and reference sites could be differentiated based on the microbial community structure as
determined by phospholipid fatty acid (PLFA) analysis. It is hypothesised that the
microbial community structure of the Hendrina site is not sustainable when classified along
an r-K gradient and that the high percentage of vegetation cover and high levels of
estimated viable microbial biomass are an artificial reflection of the current management
practices being employed at this site. Results obtained during this study, suggest that an
absence or low percentage of vegetation cover and associated lower organic matter content
of the soil have a significant negative impact on soil biochemical properties (enzymatic
activity) as well as microbial population size. Furthermore, prevailing environmental
physico-chemical and management characteristics significantly influences the vegetation
cover and subsequently the microbial community structure. The results indicate that the
microbial ecosystems in the coal discard sites could become more stable and ecologically
self-regulating, provided effective management to enhance the organic carbon content of
the soil. This could enhance nutrient cycling, resulting in changes of soil structure and
eventually an improved soil quality which could facilitate the establishment of self sustaining
vegetation cover. Results obtained during this study suggest that a polyphasic
assessment of physical and chemical properties; microbial activities by enzymatic analysis;
the characterisation of microbial community structure by analysis of phospholipid fatty
acids; and the multifactorial analysis of the data obtained can be used as complementary
assessment criteria for the evaluation of the trend of rehabilitation of mine tailings and
discard sites. Strategic management criteria are recommended based on the soil
quality environmental sustainability indices to facilitate the establishment of self sustainable
vegetation covers. The contribution of this research to soil ecology is
significant with regards to the intensive investigation and explanation of characteristics and
processes that drive ecological rehabilitation and determine the quality of the soil
environment. The multidisciplinary approach that is proposed could, furthermore, assist in
the successful rehabilitation and establishment of self-sustaining vegetation covers at
industrially disturbed areas, as well as assist in improving degraded soil quality associated
with both intensive and informal agriculture. Additionally, this approach could negate the
negative social and environmental impacts frequently associated with these activities. / Thesis (M. Environmental Science)--North-West University, Potchefstroom Campus, 2004.
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Effects of Heatshock on the Na+/K+-ATPase in Locusta migratoriaHOU, NICHOLAS YUE 27 September 2011 (has links)
Most vertebrates suffer permanent damage after minutes of anoxia. Many insects however, have part of their life cycle in anoxia or constant hypoxia, such as during their egg-hatching phase, by living as deep burrowers, or at high altitudes. Insects are able to survive in anoxia from hours to days, or even months by developing various strategies through evolution. For example, the locusts (Locusta migratoria) enter a reversible coma during anoxia that is associated with an arrest of ventilation, and a reinitiation of ventilation when returned to normoxia. This coma is correlated with a surge in the concentration of extracellular potassium ions ([K+]o), and recovery from this reversible coma is dependent on re-establishing the functional [K+]o. Prior exposure to a sublethal heatshock (HS)-preconditioning grants locusts a temporary resilience to anoxia; however, the molecular mechanisms of this protection are still unclear.
This project investigated the effects of HS-preconditioning on locusts’ ventilation, the total enzymatic activity of the Na+/K+-ATPase, as well as its distribution within the metathoracic ganglion and tested the hypothesis that HS-preconditioning alters locusts’ ventilation and increases the totally Na+/K+-ATPase activity and its concentration within neuronal membranes. I
recorded electromyograms of locusts’ ventilatory motor patterns in the presence and absence of anoxic coma by placing a copper wire electrode on ventilatory muscles 161 or 173 in control and HS-preconditioned animals. In addition, I studied the enzymatic activity of the Na+/K+-ATPase using a pyruvate kinase/lactate dehydrogenase assay and the localization of the Na+/K+-ATPase
using immunohistochemistry in control and HS-preconditioned locusts at different stages of
coma. I found that the ventilatory cycle period was decreased and the ventilatory muscle burst duration was increased after recovery from anoxic coma in HS-preconditioned locusts. I also found that anoxia did not affect the activity or the localization of the Na+/K+-ATPase. However,
HS-preconditioning increased the total activity of the Na+/K+-ATPase and the localization of the Na+/K+-ATPase within the neuronal membranes. From this project, I concluded that HSpreconditioning affected locusts’ ventilatory motor pattern after recover from anoxia and increased the total activity and the neuronal membrane localization of the Na+/K+-ATPase. / Thesis (Master, Biology) -- Queen's University, 2011-09-26 13:14:48.472
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The assessment of soil microbial and plant physiological changes during the treatment of soil containing bromacil, tebuthiuron and ethidimuron / M. de BeerDe Beer, Misha January 2005 (has links)
Increased amounts of pesticide production and application of pesticides for agriculture,
plant protection and animal health has resulted in soil, water and air pollution,
consequently relating a serious risk to the environment and also to human health.
Pesticides include several groups of compounds, herbicides, insecticides, rodenticides and
fumigants consisting of several hundred individual chemicals. Herbicides are an integral
pan of modem agriculture and for industries requiring total vegetation control. Most
herbicides are soil applied and more and more concern is raised that herbicides not only
affect target organisms but also the microbial community present in soil. The ESKOM
sub-station Zeus, in Mpumalanga (South Africa) used to apply an industrial weed control
program for the eradication of vegetation, which led to the contamination of soil by
several herbicides. These herbicides consisted of Bromacil, Tebuthiuron and Ethidimuron
which are all photosynthesis inhibitors, more specifically, they disrupt the plastoquinone
protein during electron transport at photosystem I1 (PSII). In this study the effect of biostimulation
and bio-augmentation of a specific bioremediation agent (B350) as prescribed
by ESKOM, on residual herbicides, Bromacil, Tebuthiuron and Ethidimuron was
evaluated by monitoring the soil physical and chemical properties, microbial attributes,
including potential microbial activity and community structure, as well as the
physiological effect experienced by plants (Cynodoh dactylon and Zea mays). Results
from soil physical and chemical analyses were correlated with results obtained for the
functional and structural diversity of microbial communities. All results were investigated
through statistical and multivariate analysis and the most prominent soil physical and
chemical parameters that influence the biological and biochemical properties of the soil
were identified. Results obtained from this study indicated that there were no significant
difference (p < 0.05) between the treatments, with bioremediation agent, irradiated agent
and without the agent based on results obtained from soil microbial properties and plant
physiology. Before the trial started the uncontaminated soil showed an active microbial
function, characterised by dehydrogenase, urease and arylsulphatase activity, but
community structure was not very diverse. The contaminated soil, irradiated contaminated
soil and silica sand showed less enzymatic function and was characterised by
phospholipid fatty acid groups, mid-branched saturated fatty acids, terminally branched
saturated fatty acids, normal saturated fatty acids and monosaturated fatty acids which are
indicative of microorganisms that survive better in harsh environments. Three weeks after
the addition of the specific bioremediation took place, the uncontaminated soil showed an
increase in P-glucosidase activity and percentage organic carbon (%C), which could be a
result of the presence of available plant material. Furthermore, an increase in major PLFA
groups were seen, suggesting that an increase in diversity within the soil community
occurred. The contaminated soil, irradiated contaminated soil and silica sand once again
was characterised by a low microbial function and diversity, showing no improvement.
Fluorescence data clearly show a decline in PS 11 function that result in the decline of the
rate of photosynthesis, which was seen from COz gas exchange rates. Furthermore, the
decrease in photosynthetic activity after three weeks was too severe to supply additional
information about the mechanism within photosynthesis or the photoprotective
mechanisms. A detailed study was conducted in which a 3: 1 dilution of contaminated soil
with silica sand, was also monitored for changes within plant physiology. Results revealed
that inhibition of PS I1 function already takes place within a few days time and the decline
in photosynthesis is as a result of electron transport that does not supply adenosine
triphosphate (ATP) and P-nicotinamide adenine dinucleotide (NADPH) to the Calvin
cycle (or Reductive Pentose Phosphate pathway). It does not appear that rubulose-1,sbisphosphate
carboxylase-oxygenase (Rubisco) is affected within the Calvin cycle. As a
result of PS I1 function failure, reaction centres are damaged by the production of harmful
singlet oxygen and photoprotective mechanisms (xanthophyll cycle) can not be activated.
Thus, except for dealing with ineffective electron transport, additional damage is caused
to physiological functions. After six weeks a decrease in the estimated viable biomass for
all growth mediums was found. Results of the of trans- to cis- monoenoic fatty acids and
cyclopropyl fatty acids to their monoenoic precursors ratios indicated that the soil
microbial community for the contaminated growth mediums, all experienced nutritional
stress throughout this trail. The specific bioremediation agent (B350) used, seemed to
have no effect on the microbial function and community structure within soil and as agent
had no effect on the residual herbicides or the plant physiology which experienced an
extreme decline in major metabolic functions. / Thesis (M. Environmental Science)--North-West University, Potchefstroom Campus, 2
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Soil microbial community function and structure as assessment criteria for the rehabilitation of coal discard sites in South Africa / Sarina ClaassensClaassens, Sarina January 2003 (has links)
Mining activities cause severe disturbance to the soil environment in terms of soil quality
and productivity and are of serious concern worldwide. Under South African legislation,
developers are required to ecologically rehabilitate damaged environments. The application
of agronomic approaches for the rehabilitation of coal discard sites has failed dismally in
the arid areas of southern Africa. It is obvious that compliance with mitigation and
rehabilitation requirements cannot be enforced without a thorough understanding of the
ecological principles that ensure ecological stability and subsequent sustainability of soil
ecosystems. Soil micro organisms are crucial role-players in the processes that make energy
and nutrients available for recycling in the soil ecosystem. Poor management practices and
other negative impacts on soil ecosystems affect both the physical and chemical properties
of soil, as well as the functional and structural properties of soil microbial communities.
Disturbances of soil ecosystems that impact on the normal functioning of microbial
communities are potentially detrimental to soil formation, energy transfers, nutrient
cycling, plant reestablishment and long-term stability. In this regard, an extensive overview
of soil properties and processes indicated that the use of microbiological and biochemical
soil properties, such as microbial biomass, enzymatic activity and the analysis of microbial
community structure by the quantification of specific signature lipid biomarkers are useful
as indicators of soil ecological stress or restoration properties because they are more
responsive to small changes than physical and chemical characteristics. In this study, the
relationship between the physical and chemical characteristics and different biological
indicators of soil quality in the topsoil covers of seven coal discard sites under
rehabilitation in South Africa, as well as three reference sites was investigated. Through the
assimilation of basic quantitative data and the assessment of certain physical, chemical and
biological properties of the topsoil covers obtained from the various coal discard sites as
well as the reference sites, the relative success or progress of rehabilitation and the possible
correlation between the biological indicators of soil quality and the establishment of self sustaining
vegetation covers was determined. Results from soil physical and chemical
analyses and percentage vegetation cover were correlated with the results obtained for the
functional and structural diversity of microbial communities at the various sites. All results
were investigated through statistical and multivariate analysis and the most prominent
physical and chemical parameters that influence the biological and biochemical properties
of the soil and possibly the establishment of self-sustainable vegetation cover on these
mine-tailing sites were identified. Results obtained from this study indicated no significant
difference (p>0.05) between the various discard sites based on conventional
microbiological enumeration techniques. However, significant differences (p<0.05) could
be observed between the three reference sites. All enzymatic activities assayed for the
rehabilitation sites, with the exception of urease and alkaline phosphatase displayed a
strong, positive association with the organic carbon content (%C). Ammonium
concentration had a weak association with all the enzymes studied and pH only showed a
negative association with acid phosphatase activity. A positive association was observed
between the viable microbial biomass, vegetation cover and the organic carbon content,
ammonium, nitrate and phosphorus concentrations of the soil. The various rehabilitation
and reference sites could be differentiated based on the microbial community structure as
determined by phospholipid fatty acid (PLFA) analysis. It is hypothesised that the
microbial community structure of the Hendrina site is not sustainable when classified along
an r-K gradient and that the high percentage of vegetation cover and high levels of
estimated viable microbial biomass are an artificial reflection of the current management
practices being employed at this site. Results obtained during this study, suggest that an
absence or low percentage of vegetation cover and associated lower organic matter content
of the soil have a significant negative impact on soil biochemical properties (enzymatic
activity) as well as microbial population size. Furthermore, prevailing environmental
physico-chemical and management characteristics significantly influences the vegetation
cover and subsequently the microbial community structure. The results indicate that the
microbial ecosystems in the coal discard sites could become more stable and ecologically
self-regulating, provided effective management to enhance the organic carbon content of
the soil. This could enhance nutrient cycling, resulting in changes of soil structure and
eventually an improved soil quality which could facilitate the establishment of self sustaining
vegetation cover. Results obtained during this study suggest that a polyphasic
assessment of physical and chemical properties; microbial activities by enzymatic analysis;
the characterisation of microbial community structure by analysis of phospholipid fatty
acids; and the multifactorial analysis of the data obtained can be used as complementary
assessment criteria for the evaluation of the trend of rehabilitation of mine tailings and
discard sites. Strategic management criteria are recommended based on the soil
quality environmental sustainability indices to facilitate the establishment of self sustainable
vegetation covers. The contribution of this research to soil ecology is
significant with regards to the intensive investigation and explanation of characteristics and
processes that drive ecological rehabilitation and determine the quality of the soil
environment. The multidisciplinary approach that is proposed could, furthermore, assist in
the successful rehabilitation and establishment of self-sustaining vegetation covers at
industrially disturbed areas, as well as assist in improving degraded soil quality associated
with both intensive and informal agriculture. Additionally, this approach could negate the
negative social and environmental impacts frequently associated with these activities. / Thesis (M. Environmental Science)--North-West University, Potchefstroom Campus, 2004.
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Measuring rehabilitation success of coal mining disturbed areas : a spatial and temporal investigation into the use of soil microbial properties as assessment criteria / Sarina ClaassensClaassens, Sarina January 2007 (has links)
The rehabilitation of degraded soils, such as those associated with post-mining sites, requires
knowledge of the soil ecosystem and its physical, chemical, and biological composition in order for
rehabilitation efforts to fulfil the long-term goal of reconstructing a stable ecosystem for
rehabilitated mine soil. This study addresses the need for appropriate assessment criteria to
determine the progress of rehabilitation and subsequently the success of management practices.
Significant contributions made by this investigation included the establishment of minimum
and maximum values for microbial community measurements from two case studies of
rehabilitated coal discard sites. Furthermore, it was shown that there was no relationship between
changes in microbial community function and structure and the rehabilitation age of the sites.
Following this, the considerable impact of management practices on microbial communities was
illustrated.
The first part of the study investigated the temporal changes in microbial community
function and structure in a chronosequence of rehabilitated coal discard sites aged 1 to 11 years.
The most important observation made during the investigation of the microbial communities in the
different aged soil covers of the rehabilitated coal discard sites, was that there was no relationship
between rehabilitation age and microbial activity or abundance of certain microbial groups. What
was responsible for a clear differentiation between sites and a shift in microbial community
attributes was the management practices applied.
A comparison of two chronosequences of rehabilitated coal discard sites was achieved by an
application of the 'space-for-time' hypothesis. Sites of different ages and at separate locations
('space') were identified to obtain a chronosequence of ages ('time'). The two chronosequences
included sites aged 1 to 11 years (chronosequence A) and 6 to 17 years (chronosequence B),
respectively. Sites in the same chronosequence were managed identically, while there was a
distinct difference in management practices applied to each chronosequence. The long-term effect
of the different management regimes on the soil microbial community function and structure was
investigated. Again, there was no relationship between rehabilitation age and microbial community
measurements. Fluctuations of selected microbial properties occurred in both chronosequences and
similar temporal trends existed over the rehabilitation periods. However, the less intensively
managed chronosequence (8) seemed more stable (less fluctuation occurred) over the
rehabilitation period than the more intensively managed chronosequence (A). It was therefore
concluded that the microbial communities in the less managed sites maintained their functional
and structural integrity within bounds in the absence of management inputs or disturbance. While
there was similarity in the trends over time for individual microbial community measurements, the
seemingly more stable conditions in chronosequence 6 are important in terms of the goal of
rehabilitation. / Thesis (Ph.D. (Environmental Science)--North-West University, Potchefstroom Campus, 2007
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Activity-based Functional Annotation of Unknown Proteins: HAD-like hydrolases from E. coli and S. cerevisiaeKuznetsova, Ekaterina 18 February 2010 (has links)
In all sequenced genomes, a large fraction of predicted genes encodes proteins of unknown biochemical function and up to 15% of the genes with ‘‘known’’ function are mis-annotated. Several global approaches are being employed to predict function, including sequence similarity searches, analysis of gene expression, protein interaction, and protein structure. Enzymes comprise a group of target proteins that require experimental characterization for accurate functional annotations. Here I applied enzyme genomics to identify new enzymes by screening individually purified proteins for enzymatic activity under relaxed reaction conditions, which allowed me to identify the subclass or sub-subclasses of enzymes to which the unknown protein belongs. Further biochemical characterization of proteins was facilitated by the application of secondary screens with natural substrates (substrate profiling). Application of general enzymatic screens and substrate profiling greatly sped up the identification of biochemical function of unknown proteins and the experimental verification of functional predictions produced by other functional genomics approaches.
As a test case, I used this approach to characterize the members of the haloacid dehalogenase (HAD)-like hydrolase superfamily, which consists mainly of uncharacterized enzymes, with a few members shown to possess phosphatase, beta-phosphoglucomutase, phosphonatase, and dehalogenase activities. Low sequence similarity between the members of the HAD superfamily precludes the computational prediction of their substrates and functions. Using a representative set of 80 phosphorylated substrates I characterized the phosphatase activities of 21 soluble HADs from Escherichia coli and seven soluble HADs from Saccharomyces cerevisiae. E. coli HADs show broad and overlapping substrate specificity against a wide range of phosphorylated metabolites. The yeast enzymes were more specific, and one protein also showed protein phosphatase activity. Comparison of HAD substrate profiles from two model organisms showed several “functional niches” that are occupied by HADs, which include hydrolysis of nucleotides, phosphoglycolate, phosphoserine, and pyridoxal phosphate. I proposed the cellular function for a number of HADs from both organisms based on substrate specificities. The physiological relevance of the phosphatase activity with the preferred substrate was validated in vivo for one of the HADs, E. coli YniC.
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Mananoligossacarídeo e β-glucano na suplementação dietária para juvenis de tilápia-do-nilo mantidos em tanques-redeSousa, Andressa Daniela Liranço de [UNESP] 04 February 2010 (has links) (PDF)
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sousa_adl_dr_jabo.pdf: 988790 bytes, checksum: 16a6c08389c72bdf340f861f5412e6be (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / Universidade Estadual Paulista (UNESP) / Este experimento foi conduzido em um empreendimento aquícola, tendo como objetivo a utilização de mananoligossacarídeo (MOS) e ß-glucano, na suplementação dietária do lote experimental, com o intuito de acompanhar o desempenho zootécnico e relacioná-lo aos parâmetros hematológicos, alterações morfológicas do intestino e atividade enzimática (protease, lípase e amilase) de 3000 juvenis de tilápias-do-nilo, mantidos em tanques-rede, com peso médio inicial de 24g ± 0,26. Utilizaram-se nove tanques-rede (6,0 m3) constituindo-se de três tratamentos e três repetições: Tratamento 1: ração comercial sem suplementação (controle); Tratamento 2: 0,1% por tonelada de MOS; Tratamento 3: 0,03% por tonelada de beta glucano purificados. A ração continha 36 % de proteína bruta (PB), incorporados no premix MOS e β-glucano purificado (BIORIGIN®). Os exemplares foram alimentados três vezes ao dia de acordo com a sua biomassa, e, mensalmente, os ajustes foram determinados de acordo com as biometrias. Os parâmetros analisados, físicos e químicos da água (temperatura, °C, oxigênio dissolvido, mg L-1, pH e condutividade elétrica, us cm-1); zootécnicos (peso inicial e final - Pti e Ptf, comprimento total inicial e final - Cti e Ctf, relação Pi x Ct,, fator de condição - K, conversão alimentar aparente -CAA, ganho de peso diário - GPD, taxa de crescimento específico - TCE, taxa de eficiência protéica - TEP e sobrevivência – S); hematológicos (hematócrito, hemoglobina, proteína total, contagem diferencial de leucócitos - CDL, contagem de eritrócitos - Er, contagem total de leucócitos - CTL, contagem total de trombócitos - CTT, volume corpuscular médio e concentração -VCM e hemoglobina corpuscular média – CHCM); morfologia da parte anterior do intestino (altura, altura da parede e espessura do epitélio das vilosidades) e atividade enzimática... / This experiment was conducted at an aquicolous enterprise with the objective of evaluating the use of mannanoligosaccharide (MOS) and ß-glucan as dietary supplements in an experimental lot in order to follow the zootechnical performance, establishing a relationship with the hematological parameters, the morphological alterations of the intestine, and the enzymatic activity (protease, lipase and amylase) of 3000 Nile tilapia juveniles kept in cages, with initial mean weight of 24g ± 0.26. Nine net tanks (6.0 m3) were used, with three treatments and three replications: Treatment 1: commercial feed without supplementation (control); Treatment 2: 0.1% per ton of MOS; Treatment 3: 0.03% per ton of purified beta glucan. The feed contained 36 % of crude protein (CP) incorporated into the premix MOS and purified beta glucan (BIORIGIN®). The fishes were fed three times a day according to their biomass, where the adjustments were determined monthly according to the biometry. The analysed parameters were: physical and chemical parameters of the water (temperature, °C, dissolved oxygen, mg L-1, pH and electrical conductivity, us cm-1); zootechnical (initial and final weight - Wti and Wtf, initial and final total length - Lti and Ltf, relationship Wi x Lt, condition factor - K, apparent feed-conversion - AFC, daily weight gain - DWG, specific growth rate - SGR, protein efficiency ratio - PER and survival rate - S); hematological; (hematocrit, hemoglobin, total protein, leucocyte differential count - LDC, red blood cell count - RBC, total leucocyte count - TLC, total thrombocyte count - TTC, mean corpuscular volume - MCV, and mean corpuscular hemoglobin concentration – MCHC); morphology of the front part of the intestine (height, height of the wall and thickness of the epithelium of the villi) and enzymatic activity (protease, lipase e amylase). The nile tilápia that had received the diet... (Complete abstract click electronic access below)
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Indicadores microbiológicos e químicos do solo sob diferentes sistemas de manejo agropecuárioGarcia, Martha Regina Lucizano [UNESP] 25 May 2007 (has links) (PDF)
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garcia_mrl_dr_jabo.pdf: 770404 bytes, checksum: c5d7cc77256164ad2f734dd51d491a21 (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) / Diversos estudos vêm buscando avaliar os diferentes impactos causados pelas várias formas de manejo do solo, procurando-se aliar a produção das culturas à preservação dos recursos naturais. O presente estudo objetivou avaliar a influência temporal (das estações do ano), do sistema de manejo do gado e das culturas nas características microbiológicas e químicas do solo em diferentes profundidades. O primeiro experimento foi conduzido no setor de bovinocultura da Estação Experimental da Faculdade de Ciências Agrárias e Veterinária, UNESP - Campus de Jaboticabal, localizada na região norte do Estado de São Paulo. Os sistemas de pastejo avaliados foram: pasto rotacionado, pasto contínuo e pasto controle (sem a presença de gado). As coletas das amostras de solo foram realizadas nas quatro estações do ano, no período de um ano (2005 – 2006). Cada amostra foi composta de 6 amostras simples, retiradas nas profundidades de 0 – 0,05, 0,05 – 0,10 e 0,10 – 0,20 m. O segundo experimento foi realizado nas fazendas Barracão e São João, no município de Guaíra, localizadas na região paulista da Alta Mogiana, Estado de São Paulo. Foram estudados quatro sistemas de manejo das culturas: plantio direto (PD), plantio direto integrado com pastagem (PD-I), cultivo convencional (CC) e Mata Natural (Mata). A coleta das amostras de solo foi feita somente na estação do verão, durante o período de janeiro e fevereiro do ano de 2006. Cada amostra foi composta de 10 amostras simples, retiradas nas profundidades de 0 – 0,10, 0,10 – 0,20 e 0,20 – 0,30 m. As variáveis microbiológicas, bioquímicas e químicas do solo avaliadas podem ser consideradas medidas sensíveis para determinar mudanças decorrentes dos efeitos das estações do ano, dos sistemas de manejo do gado e das culturas e da profundidade do solo. / Several, studies come searching evaluated the different impacts caused by some forms of management of soil, to try to get the production of the cultures to the preservation of the natural resources. The objective of this study was determine the influence of the seasonal, of the cattle management system and crop and the depth of the soil in the microbiological and chemical variable of the soil. The first experiment was lead in the sector of cattle breeding of the Experimental Station of the College of Agrarian Sciences and Veterinary medicine, UNESP - Campus of Jaboticabal, located in the north of São Paulo State. The evaluated systems of pasture were: rotation pasture, continuous pasture and controlled pasture. The collections of soil samples were carried in four-year seasons during the period of one year (2005 - 2006). Each sample was composed of 6 simple samples, withdrawals with hoe, in the depths of 0 – 0,05, 0,05 - 0,10 and 0,10 - 0,20 m. The second experiment was carried in the Barracão and São João farms, in the Guaíra Cite, located in the region of the Alta Mogiana, in São Paulo State. In view of evaluation of the effect of the management system crop, four systems were studied: no-tillage (NT), pasture and crop integrated systems (PD-I), conventional tillage (CC) and forest. The collection of soil samples was made in summer, during the period of January and February in 2006. Each sample was composed of 10 simple samples withdrawals with hoe, in the depths of 0 – 0,10, 0,10 - 0,20 and 0,20 - 0,30 m. The evaluated microbiological, biochemical and chemical variables of soil can be considered sensitive measurements to determinate changes due to the effects of year seasons, the cattle management system and crop and the depth of the soil.
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