Metastasis is characterized pathologically by uncontrolled cell invasion, proliferation, migration and angiogenesis. Steroid hormones, such as estrogen, and growth factors, which include insulin growth factor I/II (IGF-1/IGF-2) therapy has been associated with most if not all of the features of metastasis. It has been determined that IGF-1 increases cell survival of cancer cells and potentiate the effect of E2 and other ligand growth factors on breast cancer cells. However not much information is available that comprehensively expounds on the roles of insulin growth factor receptor (IGFR) and Rab GTPases may play in breast cancer. The latter, Rab GTPases, are small signaling molecules and critical in the regulation of many cellular processes including cell migration, growth via the endocytic pathway. This research involves the role of Rab GTPases, specifically Rab5 and its guanine exchange factors (GEFs), in the promotion of cancer cell migration and invasion. Two important questions abound: Are IGFR stimulation and downstream effect involved the endocytic pathway in carcinogenesis? What role does Rab5 play in cell migration and invasion of cancer cells? The hypothesis is that growth factor signaling is dependent on Rab5 activity in mediating the aggressiveness of cancer cells. The goal is to demonstrate that IGF-1 signaling is dependent on Rab5 function in breast cancer progression. Here, the results thus far, have shown that while activation of Rab5 may mediate increased cell proliferation, migration and invasion in breast cancer cells, the Rab5 GEF, RIN1 interacts with the IGFR thereby facilitating migration and invasion activities in breast cells. Furthermore, endocytosis of the IGFR in breast cancer cells seems to be caveolin dependent as the data has shown. This taken together, the data shows that IGF-1 signaling in breast cancer cells relies on IGF-1R phosphorylation, caveolae internalization and sequestration to the early endosome RIN1 function and Rab5 activation.

The mechanical strength of plant tissues and organs can be attributed to specific properties of the cell wall. In many cases, in order to establish their final shape, cells deposit various cell wall materials in a localized manner. This is achieved by highly organized action of the endomembrane system which is essential for biosynthesis and secretion of cell wall proteins and polysaccharides. The exocyst complex is a conserved tethering complex in eukaryotes and it is involved in tethering of secretory vesicles to the sites of secretion at the plasma membrane. In this study, we address several aspects of the plant exocyst complex architecture and cell wall development using molecular biology techniques and advanced confocal microscopy. We demonstrated that two SEC10 exocyst subunits are present in Arabidopsis thaliana and share redundant functions. We also showed that the architecture of the plant exocyst complex shares several structural features with the yeast one. We demonstrated the importance of the functional EXO84b exocyst subunit for normal tracheary element development and showed that the main constituents of the secondary cell walls are deposited normally in exocyst mutants. We described a clear difference in the exocyst microtubule-independent dynamics in epidermal cells vs. cell type...

Exocyst is a binding protein complex, which is evolutionary conserved in yeast, animal and in plant cells. It has crucial role in regulation of cell morfogenesis and cell polarity. The function of the exocyst complex is binding of secretoric vesicle to the proper side on plasma membrane in penultimate step of exocytosis. This process is essecial for function and survival of cell. Another process crucial for the cell is autophagy. In plants autophagy plays important role in the responses to nutrient starvation, senescence, abiotic and biotic stress. RabG3b are small GTPases, which have positive role in autophagy. In this work I described the interaction between RabG3b and some of subunits of exocyst complex: Exo70B1, Exo70B2 and Exo84b. I also studied changes in morfogenesis of tonoplast by induction and inhibition of authophagy and induction of anthocyans synthesis in Arabidopsis thaliana.

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In einem RT-PCR Ansatz aus neuronalen post mortem Gewebe des Menschen konnten EPB41 (Erythrozytäres Protein Bande 4.1) Spleißformen in verschiedenen Hirnregionen nachgewiesen werden. In einem weiteren RT-PCR Ansatz wurden höhermolekulare p4.1R-Spleißormen generiert, kloniert und zwei der erhaltenen Spleißformen (Klon 9 und Klon 13) charakterisiert. In einer In-situ-Hybridisierungsstudie an humanen Temporalkortex und Hippocampus konnten EPB41-Isoformen in fast allen Neuronen nachgewiesen werden. In immunhistochemischen Untersuchungen mit selbstgenerierten p4.1R spezifischen Antikörper wurden ebenfalls ausschließlich Neurone markiert. In proteinbiochemischen Untersuchungen konnte in verschiedenen humanen Hirnareale mit den p4.1R spezifischen Antikörpern eine 110 kDa und 120 kDa immunreaktive Bande nachgewiesen werden. In Experimenten an Primärkulturen von Rattenneuronen konnte eine Herunterregulation der p4.1R Proteine sowie der mRNA von p4.1R durch Verarmung des funktionellen Pools an G-Proteinen der Rho-Familie in der Zelle gezeigt werden. Die GTPasen der Rho-Familie regulieren unter anderem die Plastizität des Dendritenbaumes von Neuronen. / In a RT-PCR approach using human postmortem cerebral tissue from different brain regions several EPB41 (erythrocyte protein band 4.1) spliceforms could be generated. The amplificates were cloned and two of the highmolecular EPB41 spliceforms Klon 9 and Klon 13 were characterized. Klon 9 is a new spliceform, Klon13 is identical with EPB41 (accesion number AF156225). In an in situ hybridization study the EPB41 spliceforms were detected in almost all neurons of the temporal cortex and the hippocampus. Immunhistochemical localization of the p4.1R immunreactive proteins in human temporal cortex using p4.1R specific peptide antibodies, confirmed these results. The stning pattern of soma and dendrites of the neurones was punctuated. In Western Blot experiments a 110 kDa and 120 kDa p4.1R immunreactive proteinband was detected. A regulation of the protein 4.1R immunreactive proteins as well as the mRNA of protein 4.1 was found in experiments in which the functional pool of Rho GTPases in hippocampal primary neurones of the rat was manipulated.

Macrophages are one of the three main human cell types infected by HIV-1. They are highly plastic cells requiring a dynamic actin cytoskeleton for their role in development, homeostasis, tissue repair and immunity. For HIV-1, disrupting actin in macrophages is detrimental in that it leads to a complete block of viral uptake and reduces reverse transcription but, significantly, not fusion. Rho GTPases (Rac1, RhoA and Cdc42) regulate many aspects of actin dynamics including those required for endocytosis. Using a pharmacological approach, it was shown that Rac1 along with Rho GTPase effectors Pak1 and N-WASP are important for productive HIV-1 entry in macrophages. However, pharmacological inhibitors aren’t available for many host factors and may have off-target effects. To overcome this, expression of dominant negative (DN) Rho GTPases was attempted in human stem cell-derived macrophages (esMDMs). While DN Rac1 expressing esMDMs were successfully generated, this was not possible for the other two. DN Rac1 expressing esMDMs, as expected, had less filamentous actin and reduced dextran uptake compared to control esMDMs. In contrast to the pharmacological studies, HIV-1 infection studies in Rac1 DN esMDMs revealed a significant increase in HIV-1 fusion, reverse transcription and nuclear import, which could be due to reduced filamentous actin leading to a slower rate of endocytosis thereby allowing more time for viral fusion within endocytic vesicles. Surprisingly, reduced HIV-1 gene expression was observed in Rac1 DN esMDMs. This was corroborated by transfection studies implicating Rho GTPases in LTR driven gene expression. To overcome the ineffectiveness of RhoA and Cdc42 DN constitutive gene expression in esMDMs, an inducible lentiviral gene expression system based on the use of a constitutive promoter and a FLEx switch mediating irreversible DNA inversions was generated. The novel FLEx vector was the first system shown to induce transgene expression in esMDMs albeit at a very low efficiency.

Esta tese trata do desenvolvimento de métodos bioanalíticos, baseados na técnica de eletroforese capilar, para duas aplicações distintas: a análise de complexos formados pela ligação entre proteínas e DNA e detecção e monitoramento de hidrólise de GTP catalisada por enzimas. No primeiro capítulo descreve-se uma investigação sobre a viabilidade de ensaios tipo EMSA (?electrophoretic mobility shift assay?) em chips com microcanais para eletroforese. Os fatores de transcrição purificados c-Jun(AP1) e p-50(NFkB) foram usados nos estudos de ligação a sondas de DNA fita dupla contendo as seqüências consenso de ligação dos fatores AP1, NFkB e AP2. As sondas de DNA sintéticas continham como modificação a marcação com o corante fluorescente Cy5 ligado à extremidade 5?, sendo que as mesmas seqüências não marcadas foram usadas para experimentos de competição. Ensaios tipo EMSA em chip puderam ser realizados em cerca de 2 h com baixo consumo de amostra e sem a necessidade de usar marcação com material radioativo. A sondas de DNA e os complexos formados nas reações de ligação foram analisados no Bioanalyzer usando tanto o procedimento padrão para a análise de DNA quanto um protocolo modificado. Nesta modificação não foi usado corante de intercalação mas 4,9 nM de Cy5-dCTP que foi adicionado ao gel, permitindo apenas a detecção de DNA previamente marcado. Apesar da necessidade de ajustes no método para cada proteína testada, foi mostrado o potencial de se substituir o método de EMSA em gel por métodos baseados em eletroforese em chip. Um experimento de competição foi realizado com sucesso mostrando a ligação do fator de transcrição p-50 à sonda contendo a seqüência consenso NFkB. Este experimento foi considerado como prova de princípio para a hipótese estudada. No segundo capítulo relata-se o desenvolvimento de um método para a detecção e monitoramento in vitro de atividade nucleotídeo-trifosfatase. O método que se mostrou robusto e reprodutível foi aplicado para investigar a atividade GTPase de uma proteína recombinante contendo o domínio catalítico de uma septina humana SEPT4 / Bradeiona (GST-rDGTPase). O exemplo de aplicação demonstra que a técnica de eletroforese capilar pode substituir o método tradicionalmente usado com marcação radioativa para detecção de atividade GTPase inclusive em estudos de cinética enzimática. Os parâmetros cinéticos determinados para a GST-rDGTPase foram: vmax = 1.7 μ M min-1 ± 0.1 and Km = 1.0 mM ± 0.3; kcat = 9 x 10-3 SM-1. O efeito de co-fatores como Mg2+ and Mn2+ também foi estudado. O método analítico descrito também se mostrou útil para a análise de di- e trifosfatos de outros nucleotídeos. / This Thesis concerns on the development of capillary electrophoresis-based bioanalytical methods for two distinct applications: DNA-protein binding analysis and monitoring of enzyme-catalyzed GTP hydrolysis. In the first chapter, the feasibility of on-chip electrophoretic mobility-shift assays (EMSA) is investigated. Purified transcription factors c-Jun(AP1) and p-50(NFkB) were used for binding studies to dsDNA probes containing the consensus sequences from AP1, NFkB and AP2 regulatory sequences. DNA probes were modified at the 5?-end with the Cy5 and unlabeled oligos were used for competition experiments. On-chip-EMSA could be carried out within ca. 2 h with low sample consumption and no need to handle radioactive material. Both, the dsDNA probes and the shifted oligos from binding reactions were analyzed on the ?2100 Bioanalyzer? using either, the standard procedure for DNA analysis or a modified protocol, in which no intercalating dye was used. Instead, 4.9 nM Cy5-dCTP was added to the gel matrix allowing the detection of only Cy5-labeled DNA. Despite the need of specific adjustments for each protein, we have shown the potential for replacing slab gel-based EMSA for on-chip methods. A competition experiment to show sequence specific binding of the transcription factor p-50 to the consensus sequence NFkB is presented as a proof of principle. In chapter II, a capillary electrophoresis-based method for in vitro detection and monitoring of nucleotide-triphosphatase activity is described. This robust and reproducible method was used to investigate GTPase activity of a recombinant protein construct containing the catalytic domain of Human SEPT4 /Bradeion ? (GST-rDGTPase). The application example demonstrates that the capillary electrophoresis technique can replace classical radioactive methods for GTPase activity assays and may be used as a routine analytical tool. Enzyme kinetics of GST-rDGTPase was studied and yielded the following kinetic parameters: vmax = 1.7 μM min-1 ± 0.1 and Km = 1.0 mM ± 0.3; kcat = 9 x 10-3 s-1. In addition the effect of co-factors such as Mg2+ and Mn2+ in the catalytic activity was investigated. The described analytical method was also shown to be useful to analyze di- and triphosphated forms of other nucleotides.

A via de sinalização da GTPase RhoA atua em diversos processos celulares. Para avaliar o comportamento de RhoA, após estresse causado por radiação ultravioleta, foram gerados clones mutantes que expressam RhoA em seu estado constitutivamente ativo e dominante negativo. Após exposição das linhagens à radiação ultravioleta, observou-se uma maior sensibilidade e um maior tempo de recuperação das linhagens quando a atividade de RhoA é reduzida. Estes prejuízos no reparo prejudicaram a proliferação e sobrevivência celular quando da deficiência na atividade de RhoA. Em linhagens deficientes na via de NER, percebemos que estas linhagens possuem uma capacidade ainda mais reduzida de reparo quando a atividade de RhoA é inibida. / The RhoA GTPase signaling pathway acts on many cellular processes. To evaluate this possible RhoA function after stress caused by ultraviolet radiation, mutant clones expressing RhoA in its constitutively active or dominant negative forms were generated. After exposure of the cells to ultraviolet radiation, cell lines showed a higher sensitivity and a delayed recovery capacity when the RhoA activity is reduced. The impaired repair reduced the cells proliferation and survival under RhoA deficiency. In cell lines deficient in NER pathway, we notice that these cell lines, have a further reduced ability to repair damaged DNA under RhoA inhibition.

La polarité cellulaire est un phénomène biologique essentiel du monde vivant. Chez la levure Candida albicans, sa capacité à croître sous une forme hyperpolarisée semble être un élément déterminant de sa pathogénicité. Nous avons entrepris d’identifier les éléments moléculaires d’une structure essentielle à cette croissance hyphale, le Spitzenkörper, afin de mieux comprendre le rôle de ce corps apical dans la croissance polarisée. Nous nous sommes également intéressés à la régulation des protéines Rho3 et Rho4 impliquées dans la croissance polarisée de C. albicans, à travers l’identification et l’étude de la protéine RhoGAP commune à ces deux protéines Rhos, la protéine Rgd1.Chez la levure Saccharomyces cerevisiæ, les protéines Rho3 et Rho4 sont également impliquées dans le contrôle de la croissance polarisée, et sont régulées par la protéine Rgd1. Le laboratoire, à l’origine de la découverte de ce régulateur commun, étudiait des aspects de croissance polarisée contrôlée par les protéines Rho3 et Rho4, à travers l’étude de la régulation de la protéine Rgd1. Nous avons notamment mis en évidence que Rgd1p est modifiée au niveau post-traductionnel par des phosphorylations. La kinase Ipl1 de la famille des kinases Aurora est un des acteurs de cette modification. Différents éléments indiquent que le complexe phosphatase Glc7-Bud14 serait également impliqué dans le contrôle de l’état de phosphorylation de Rgd1p, de façon antagoniste à la kinase Ipl1 / Cell polarity is an essential process for living organisms. In the yeast Candida albicans, its ability of hyperpolarized growth seems to be a decisive element for its pathogenicity. We undertook to identify molecular elements of an essential structure for hyphal growth, named Spitzenkörper, to better understand the role of this apical body in polarised growth. We also studied regulation of Rho3 and Rho4 proteins implicated in C. albicans polarised growth, through identification and study of a shared RhoGAP protein, named Rgd1.In the yeast Saccharomyces cerevisiæ, Rho3 and Rho4 proteins are also implicated in polarised growth control, and are regulated by Rgd1 protein. The laboratory, which identified this shared regulator, studied polarised growth aspects controlled by Rho3 and Rho4 proteins, through study of Rgd1p regulation. We showed that Rgd1p is post-translationally modified, by phosphorylations. The Ipl1 kinase, an Aurora family member, is implicated in this modification. Several elements indicate that the Glc7-Bud14 phosphatase complex would be also implicated in the control of Rgd1 phosphorylation state, antagonistically to Ipl1p

This thesis work describes the role of Rab proteins in amyloid processing and clearance in different cell pathways. It also describes an experimental approach used to analyze the expression effects of Rab10 in amyloid beta production. Since the main theory behind neurodegeneration in Alzheimer's disease claims that high levels of amyloid beta 42 (Aβ42) molecules trigger widespread neuronal death, control of Aβ42 has been a main target in Alzheimer's disease research. In addition, several studies show increased levels of particular Rab proteins in Alzheimer's pathogenesis. However, no review consolidates current findings in neurodegeneration of Alzheimer's with Rab protein dysfunction. The first chapter of this thesis aims to address this need by providing a current review of Rab proteins associated with APP and neurodegeneration. The second chapter constitutes an experimental approach used to characterize the effects of Rab10 and Sar1A GTPases in APP and amyloid processing. We found that Rab10 expression does not affect APP production but significantly changes Aβ generation, particularly the toxic Aβ42 and Aβ42:40 ratio. On the other hand, we found no significant effect of Sar1A expression on either APP or amyloid beta generation. These findings partially confirm the work done by Kauwe et al (2015) and provide preliminary evidence for two potential targets for protective effects in neurodegeneration.