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Modelo de fragilidade gama e regressão quantílica em análise de sobrevivência de abelhas melíferas expostas à proteína Cry1Ac / Gamma frailty model and quantile regression in the survival analysis of honeybees exposed to Cry1Ac protein.Samudio, Fanni Petrona Ruiz 28 February 2014 (has links)
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Previous issue date: 2014-02-28 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Bees are essential for the maintenance of biodiversity. They are also responsible for a large percentage of world food production. The species Apis mellifera is considered of great economic value due to its products for human consumption. The creation of insect-resistant transgenic products has increased the chances for the contact between bees and the Cry proteins derived from the bacterium Bacillus thuringiensis, which can be toxic to bees. Therefore, it is very important to study the hazards of toxicity. The study of these proteins in bees can be conducted by using survival analysis techniques, in which the response variable is the time until the occurrence of the event of interest, called failure time. If failure does not occur, time is called censoring, which is some partial information. The main interest is to estimate parameters to describe the survival or hazards, at a given time. In general, when there are covariates that may affect the survival time, adjustment can be performed by the Cox Regression Model, also known as proportional hazards model, through the assumption of proportional hazards among individuals over time. Chapter I, which deals with an adaptation of the Cox Regression model known as Fragility Model, not only explains the hazard of failure from individuals due to the effect of covariates, but also describes the existence of an unobserved random variable that groups individuals in natural or artificial conglomerates. The survival times were modeled to explain the hazard of failure by immature workers of A. mellifera under the effect of covariates; the colony was used as a random variable; and the ingestion of Cry1Ac protein, as fixed explanatory variable. Three different diets were tested to evaluate the toxicity of Cry1Ac on A. Mellifera: pure artificial (D0), artificial diluted in water with Cry1Ac (D2) and artificial diluted in water (D2). The individuals were collected from five different colonies maintained in Viçosa, Minas Gerais, Brazil. The random variable colony (frailty) was significant, which indicates statistical differences in the lifespans of bees from different colonies. Considering this diversity of frailty, the artificial diet diluted in water showed a higher hazard of failure, significantly different from the effect of the control diet (artificial pure). Therefore, the survival of the bee larvae was decreased due to the addition of water to the diet, which diluted the feed. However, the Cry1Ac-protein-based diet showed no significant hazard of failure when compared with the control. An alternative technique to the Cox model is presented in Chapter II of this work. When no proportional hazards of the individuals over time are observed within the sample, it is necessary to stratify or perform some other weakening of the proportional hazard condition. It can be used the Quantile Regression, which studies the relationship between the dependent variable and the explanatory variables in the conditional quantiles by minimizing the weighted mean absolute errors. This technique has properties of equivariance, invariance for monotomic transformations and robustness in the presence of outliers. Thus, by means of equivariance, they can be applied to data with censoring. It was found that, in the same set of biosafety data from the Cry1Ac protein, in honeybees called A. Mellifera, the hazards of failure by individuals are not proportionalities for the different diets studied. The survival times of bees were adjusted by quantile regression, by using the Portnoy estimator for 14 quantiles. In quantiles {0.10; 0.15; 0.30; 0.40}, the coefficients are negative values significantly different from zero. For such, in these quantiles, the individuals fed with pure diet (D0) had longer survival time compared to those fed with a diet containing Cry1Ac protein (D1). This was observed among younger individuals, since the lifespan of the larvae lifespans in these quantiles are below the average time of life. The coefficients for the quantiles {0.35; 0.50; 0.60} presented statistically significant negative effect. Therefore, water addition to the diet affected the survival of larvae approximately at the average lifespans. / As abelhas são seres indispensáveis para a manutenção da biodiversidade e além disso, são responsáveis por grande porcentagem da produção mundial de alimentos. A Apis mellifera é considerada espécie de grande valor econômico, devido a seus produtos para o consumo humano. Atualmente, com a criação de transgênicos resistentes a insetos, aumentou a possibilidade das abelhas entrarem em contato com as proteínas Cry derivada da bactéria Bacillus thuringiensis, que pode ser toxica às abelhas, tornando o estudo dos riscos de toxicidade importante. Portanto, o estudo dessas proteínas nas abelhas pode ser realizada por meio das técnicas da análise de sobrevivência. Nestas técnicas a variável resposta é o tempo até a ocorrência do evento de interesse, denominado tempo de falha, e se a falha não ocorrer, o tempo é denominado censura, que é uma informação parcial. O principal interesse é estimar parâmetros para descrever a sobrevivência ou riscos, num certo tempo determinado. Usualmente quando existem covariáveis que possam influir no tempo de sobrevivência o ajuste pode ser realizado pelo Modelo Regressão de Cox, também conhecido como de modelo de riscos proporcionais, pela suposição dos riscos proporcionais entre os indivíduos ao longo do tempo. No Capítulo I deste trabalho é realizada uma adaptação da Regressão de Cox conhecida como Modelo de Fragilidade, que além de explicar o risco do indivíduo falhar por influência de covariáveis, também descreve a existência de alguma variável aleatória não observada que agrupa indivíduos em conglomerados naturais ou artificiais. Os tempos de sobrevivência foram modelados para explicar o risco de falhar das operárias imaturas de A. mellifera sob o efeito de covariáveis, sendo a colônia utilizada como variável aleatória e a ingestão da proteína Cry1Ac como variável explicativa fixa. Para avaliar a toxicidade de Cry1Ac sobre A. mellifera, foram testadas três diferentes dietas: artificial pura (D0), artificial diluída em água com Cry1Ac (D2) e artificial diluída em água (D2). Os indivíduos foram coletados de cinco colônias diferentes mantidas em Viçosa, Minas Gerais, Brasil. A variável aleatória colônia (fragilidade) foi significativa, indicando diferenças estatísticas nos tempos de vida das abelhas provenientes de diferentes colônias. Dentro dessa diversidade de fragilidade, a dieta artificial diluída em água apresentou risco maior de falhar, significativamente diferente do efeito da dieta controle (artificial pura). Portanto, a sobrevivência das larvas de abelhas foi diminuída em virtude da adição de água na dieta, pela diluição do alimento. No entanto, a dieta baseada na proteína Cry1Ac não mostrou risco de falha significativo quando comparado com o controle. Uma técnica alternativa ao Modelo de Cox é apresentada no Capítulo II deste trabalho. Quando se verifica que os riscos dos indivíduos, ao longo do tempo dentro da amostra, não são proporcionais, é necessário estratificar ou realizar um outro procedimento na análise. Uma alternativa que pode ser utilizada é a Regressão Quantílica, que estuda a relação entre a variável dependente e as variáveis explicativas nos quantis condicionais, por meio da minimização de erros absolutos ponderados. Esta técnica possui propriedades de equivariância, invariância para transformações monotômicas e robustez na presença de outlier. Assim, pela equivariância podem ser aplicados aos dados com censura. Foi verificado que no mesmo conjunto de dados de biossegurança da proteína Cry1Ac em abelhas denominadas A. mellifera que os riscos de falhar dos indivíduos não são proporcionalidades para as diferentes dietas estudadas. Os tempos de sobrevivência das abelhas foram ajustados pela regressão quantílica, utilizando o estimador de Portnoy para 14 quantis. Nos quantis {0,10; 0,15; 0,30; 0,40} os coeficientes são valores negativos significativamente diferentes de zero. Por tanto, nestes quantis os indivíduos alimentados com a dieta pura (D0) tiveram maior tempo de sobrevivência, que aqueles que têm incorporado à proteína Cry1Ac na dieta (D1), isto aconteceu entre os indivíduos mais novos, já que nesses quantis os tempos de vida das larvas são inferiores ao tempo de vida mediano. Os coeficientes para os quantis {0,35; 0,50;0,60} apresentaram efeito negativo estatisticamente significativos, por tanto a incorporação da água na dieta influiu na sobrevivência das larvas aproximadamente nos tempos medianos de vida.
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Características florais e dependência por polinizadores de cinco cultivares de pepino e manejo de colméias em estufasNicodemo, Daniel [UNESP] 27 November 2008 (has links) (PDF)
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nicodemo_d_dr_jabo.pdf: 529924 bytes, checksum: 436115f2f4f07ab45288d9c5ed7c0e35 (MD5) / Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) / O cultivo em estufas propicia a obtenção de produtos de excelente qualidade, porém, os agentes polinizadores que contribuem na maximização da produção não são adaptados a ambientes fechados. Utilizando três cultivares tipo Japonês e duas tipo Aodai de pepino (Cucumis sativus L.) foram realizados dois experimentos em três estufas localizadas na USP/Ribeirão Preto. Os objetivos foram estudar a biologia floral das cultivares no que se refere ao número de flores produzidas por planta, período de antese, porcentagem de açúcares do néctar, produção e viabilidade dos grãos de pólen, receptividade do estigma e atratividade de flores e, a importância das abelhas Jataí (Tetragonisca angustula), Iraí (Nannotrigona testaceicornis) e Africanizadas (Apis mellifera) quanto a freqüência das abelhas nas flores, tempo e tipo de coleta e produção de frutos quanto ao peso, comprimento e diâmetro. O manejo das abelhas africanizadas foi estudado e um modelo de núcleo com dois alvados desenvolvido. As flores das cultivares avaliadas têm antese de, aproximadamente, 10 horas. A viabilidade dos grãos de pólen e a receptividade do estigma não são limitantes na polinização de pepino Japonês e Aodai. Os índices de frutificação de pepino Japonês por partenocarpia são altos (78 %), porém há aumento de 19% quando ocorre polinização por abelhas. A cultivar Aodai depende dos insetos para produção de frutos, sendo que flores visitadas até às 10h30 originaram frutos mais pesados. As abelhas Africanizadas se adaptaram a colméia com dois alvados, visitando flores em parte do dia dentro da estufa, promovendo a polinização, e o restante fora, ambiente com maior oferta de recursos. / The cultivation in greenhouses allows obtaining products of excellent quality, however, the pollinators that contribute maximizing the production are not adapted to the indoor environment. Using three Japanese and two Aodai cultivars of cucumber (Cucumis sativus L.) were conducted two experiments in three greenhouses located in USP / Ribeirão Preto. The aims were to study the cultivars floral biology with regard to the number of flowers produced per plant, anthesis period, the percentage of sugars in nectar, production and viability of pollen grains, stigma receptivity and attractiveness of flowers, and the importance of Jataí (Tetragonisca angustula), Iraí (Nannotrigona testaceicornis) and Africanized honeybees (Apis mellifera) with regard to the frequency of bees in the flowers, time and type of collection and fruit weight, length and diameter. The management of Africanized bees has been studied and a hive with two entrances was developed. The anthesis period was approximately of 10 hours. The viability of pollen grains and the receptivity of stigma did not limit the pollination of Japanese cucumber and Aodai. The parthenocarpy fruit set of Japanese cucumber was high (78%), but there is an increase of 19% in fruit set when the flowers were pollinated by bees. The cultivar Aodai depends on the insects for production of fruits. Flowers visited until 10h30 originated the heaviest ones. Africanized bees adapted itself to the hive with two entrances, visiting flowers in part of the day inside the greenhouse, promoting pollination, and the rest outside, the environment with greater supply of resources.
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Características florais e dependência por polinizadores de cinco cultivares de pepino e manejo de colméias em estufas /Nicodemo, Daniel. January 2008 (has links)
Resumo: O cultivo em estufas propicia a obtenção de produtos de excelente qualidade, porém, os agentes polinizadores que contribuem na maximização da produção não são adaptados a ambientes fechados. Utilizando três cultivares tipo Japonês e duas tipo Aodai de pepino (Cucumis sativus L.) foram realizados dois experimentos em três estufas localizadas na USP/Ribeirão Preto. Os objetivos foram estudar a biologia floral das cultivares no que se refere ao número de flores produzidas por planta, período de antese, porcentagem de açúcares do néctar, produção e viabilidade dos grãos de pólen, receptividade do estigma e atratividade de flores e, a importância das abelhas Jataí (Tetragonisca angustula), Iraí (Nannotrigona testaceicornis) e Africanizadas (Apis mellifera) quanto a freqüência das abelhas nas flores, tempo e tipo de coleta e produção de frutos quanto ao peso, comprimento e diâmetro. O manejo das abelhas africanizadas foi estudado e um modelo de núcleo com dois alvados desenvolvido. As flores das cultivares avaliadas têm antese de, aproximadamente, 10 horas. A viabilidade dos grãos de pólen e a receptividade do estigma não são limitantes na polinização de pepino Japonês e Aodai. Os índices de frutificação de pepino Japonês por partenocarpia são altos (78 %), porém há aumento de 19% quando ocorre polinização por abelhas. A cultivar Aodai depende dos insetos para produção de frutos, sendo que flores visitadas até às 10h30 originaram frutos mais pesados. As abelhas Africanizadas se adaptaram a colméia com dois alvados, visitando flores em parte do dia dentro da estufa, promovendo a polinização, e o restante fora, ambiente com maior oferta de recursos. / Abstract: The cultivation in greenhouses allows obtaining products of excellent quality, however, the pollinators that contribute maximizing the production are not adapted to the indoor environment. Using three Japanese and two Aodai cultivars of cucumber (Cucumis sativus L.) were conducted two experiments in three greenhouses located in USP / Ribeirão Preto. The aims were to study the cultivars floral biology with regard to the number of flowers produced per plant, anthesis period, the percentage of sugars in nectar, production and viability of pollen grains, stigma receptivity and attractiveness of flowers, and the importance of Jataí (Tetragonisca angustula), Iraí (Nannotrigona testaceicornis) and Africanized honeybees (Apis mellifera) with regard to the frequency of bees in the flowers, time and type of collection and fruit weight, length and diameter. The management of Africanized bees has been studied and a hive with two entrances was developed. The anthesis period was approximately of 10 hours. The viability of pollen grains and the receptivity of stigma did not limit the pollination of Japanese cucumber and Aodai. The parthenocarpy fruit set of Japanese cucumber was high (78%), but there is an increase of 19% in fruit set when the flowers were pollinated by bees. The cultivar Aodai depends on the insects for production of fruits. Flowers visited until 10h30 originated the heaviest ones. Africanized bees adapted itself to the hive with two entrances, visiting flowers in part of the day inside the greenhouse, promoting pollination, and the rest outside, the environment with greater supply of resources. / Orientador: Euclides Braga Malheiros / Coorientador: David de Jong / Banca: Leomam Almeida Couto / Banca: Luis Carlos Marchini / Banca: Roque Takahashi / Banca: Jeffrey Frederico Lui / Doutor
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Influência do pólen sobre o desenvolvimento de colônias de abelhas africanizadas (Apis mellifera L.) / Influence of pollen on the Africanized bee colonies development (Apis mellifera L.)Anna Frida Hatsue Modro 18 March 2011 (has links)
O conhecimento da qualidade do pólen apícola e a sua influência sobre o desenvolvimento de colônias pode contribuir, principalmente, para a melhoria da atividade apícola e para o controle de qualidade do pólen comercializado para o consumo animal e humano. O presente trabalho objetivou caracterizar o pólen quanto a origem botânica, determinar parâmetros físicoquímicos e, relacionar com o desenvolvimento de colônias de abelhas africanizadas (Apis mellifera L.), medido pelo tamanho da área ocupada com pólen, mel e cria dentro da colméia (cm²) e a assimetria flutuante das asas de abelhas operárias. O experimento de campo foi realizado no apiário do Departamento de Entomologia e Acarologia da Escola Superior de Agricultura Luiz de Queiroz em Piracicaba, SP, onde foram instaladas cinco colméias de A. mellifera com um coletor de pólen tipo frontal. As coletas foram realizadas nas quatro estações climáticas do ano: outono (02/abr. a 28/maio/2008), inverno (09/jul. a 03/set./2008), primavera (07/out. a 02/dez./2008) e verão (09/jan. a 06/mar./2009). O local de instalação do apiário apresenta domínio de vegetação de Floresta Estacional Semidecidual (Mata Atlântica), porém com amplas áreas antropizadas, onde existem cultivos agrícolas e canteiros ornamentais com árvores e ervas. Ao longo do ano foram encontrados 81 tipos polínicos nas cargas de pólen interceptadas, pertencentes a 32 famílias botânicas. Pão de abelhas apresentou 86 tipos polínicos, pertencentes a 34 famílias botânicas, sendo Fabaceae, Asteraceae e Malvaceae as famílias com maior freqüência de tipos polínicos ( 5 tipos polínicos) e, Myrtaceae, a família com alta freqüência de grãos de pólen. As médias anuais de matéria seca (67,41%), proteína bruta (27,02%), extrato etéreo (3,66%), matéria mineral (3,34%) e carboidratos totais (65,41%) de cargas e, matéria seca (78,80%) e proteína bruta (25,89%) de pão de abelhas estão de acordo com o regulamento técnico para comercialização do pólen no Brasil. A composição polínica apresentou relação com os valores de matéria seca (Piper sp. e Vernonia polyanthes), proteína bruta (Eucalyptus sp., Fabaceae tipo 2 e Myrcia sp.), extrato etéreo (Astrocaryum sp., Parthenium sp. e V. polyanthes), matéria mineral (Myrcia sp.) e, com carboidratos totais (Parthenium sp. e V. polyanthes). Proteína bruta e extrato etéreo tenderam em se relacionar com indivíduos mais simétricos. A área ocupada dentro da colméia esteve relacionada com a quantidade de pólen coletado, riqueza e equitabilidade da composição polínica (n=45; p-valor<0,05). Com base nos resultados obtidos, conclui-se que, as famílias botânicas Fabaceae, Asteraceae, Malvaceae e Myrtaceae são as mais importantes fontes poliníferas em Piracicaba. A origem botânica do pólen apícola tem efeito sobre a sua qualidade físico-química. Os valores de proteína bruta, extrato etéreo, quantidade de pólen coletado, riqueza e equitabilidade da composição polínica influenciam positivamente o desenvolvimento de colônias. / The knowledge of the apiarist pollen and its influence on the colonies development could contribute mainly for the improvement of the apiarist activity and for the quality control of the commercialized pollen for animal and human consumption. This assignment had as a goal to characterize the pollen in respect of the botanical origin, to determine physicochemical parameters and to relate it with the africanized bee colonies development (Apis mellifera L.), measured by the area size occupied with pollen, honey and breed inside the beehive (cm²) and the wings fluctuating asymmetry from the worker bees. The outside experiment was performed in the apiary of the Entomology and Acarology Department from the Agriculture College Luiz de Queiroz in Piracicaba, SP, where there were mounted five beehives of A. mellifera with a frontal pollen collector. The swabs were done in the four year seasons: fall (02/april to 28/may/2008), winter (09/july to 03/september/2008), spring (07/october to 02/december/2008) and summer (09/january to 06/march/2009). The apiary installation place presents predominance of Semidecidual Seasonal Forest vegetation (Atlantic Forest), but with wide cultivated areas, where it exist several agricultural crops and ornamental sites with trees and herbs. During the year, there were found 81 pollinical types in the intercepted pollen load, which belong to 32 botanical families. Bees bread presented 86 pollinical types, which belong to 34 botanical families, in that Fabaceae, Asteraceae and Malvaceae are the families with higher frequency of pollinical types ( 5 pollinical types) and, Myrtaceae, the family with high frequency of pollen seeds. The annual averages of dry matter (67.41%), crude protein (27.02%), ether extract (3.66%), mineral matter (3.34%) and total carbohydrates (65.41%) of loads and, dry matter (78.80%) and crude protein (25.89%) of bees bread are in accordance with the technical regulation for pollen commercialization in Brazil. The pollinical composition presented relation with the values of dry matter (Piper sp. and Vernonia polyanthes), crude protein (Eucalyptus sp., Fabaceae type 2 and Myrcia sp.), ether extract (Astrocaryum sp., Parthenium sp. and V. polyanthes), mineral matter (Myrcia sp.) and with total carbohydrates (Parthenium sp. and V. polyanthes). Crude protein and ether extract tended to relate to individuals more symmetrical. The area occupied within the hive was related to the amount of pollen collected, richness and evenness of pollen composition (n=45; p-value<0.05). According the results, it is concluded that the Fabaceae, Asteraceae, Malvaceae and Myrtaceae botanical families are the most important polliniferous sources in Piracicaba. The botanical origin of apiarist pollen has effect on its physicochemical quality. The values of crude protein, ether extract, collected pollen quantity, richness and evenness of pollinical composition have positive influence in the colonies development.
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Approaching the Pollinator Problem Through Human-Bee Relations: Perspectives & Strategies in BeekeepingBero, Ursula January 2017 (has links)
Beekeepers help to secure the pollination capacity of bees by mediating bee-stressors. This study argues that beekeeper strategies are best conceptualized as a series of specialized practices for bettering bee-health, which are mobilized by a variety of actors, including those who are not traditionally considered ‘beekeepers’. The aim of this paper is to explore those human beliefs and practices which are most relevant for gaining insight into the current pollinator problem. Farmers, bee-conservationists, bee-researchers and honeybee-keepers all play an important role in securing bee health. The paper draws on the social-ecological perspective to consider alternative definitions of caring for bees, what shapes these conceptualizations and how these are reflected in beekeeper strategies, which inevitably contribute to the overall functioning of human-bee constituted systems. In the context of rising honeybee colony losses in Canada and of wild bee decline around the world, understanding the diversity of approaches for bettering bee-health is exceedingly important for initiating long-term, sustainable and multi-level bee-pollinator conservation.
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The pollination ecology of commercial sunflower (Helianthus annuus L.) in South Africa with special reference to the honeybee (Apis mellifera L.)Du Toit, Adriaan Pieter 04 February 2008 (has links)
Please read the abstract (Summary) in the section, 09summary and aknowledgements, of this document / Dissertation (MSc (Entomology))--University of Pretoria, 1988. / Zoology and Entomology / MSc / unrestricted
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Analys av bipollensorter i Västerbotten : Betydelse och för- och nackdelar med klassiska morfologiska metoder / Pollen grain analysis in Västerbotten, Umeå : Pros and cons using classic morphological methodsPersson, Jesper January 2021 (has links)
Composition of pollen pellets foraged by honeybees, sampled in Degernäs and Tavelsjö, Västerbotten County, during early summer 2020, is used to explore if honeybees are monofloral or polyfloral. Samples from different days and different colours were evaluated by light microscopy. Each unique pollen species in each pellet was morphologically identified with help of an international pollen database (PalDat) and a common bee plant document, using light microscopy and scanning electron microscope photographs. A selection of pollen species were identified down to species level and were used to explore which wild pollinators can also pollinate these plant species, to speculate around possible competition scenarios between them and honeybees. SEM and DNA extraction were performed with a selection of the pollen pellets and with the extracted DNA, different PCR primers targeting different plant gene markers were tested to see which ones worked with pollen from northern Sweden. More detailed pictures of the pollen grains were seen in SEM which helped ease the species identification of some of them. The results showed that only a few of the pollen pellets had only one detected plant species while the rest had 2 or more plant species in them. Thus, these data indicate that the honeybees in Degernäs and Tavelsjö are polyfloral, at least for the samples studied in this bachelor thesis. Methods are evaluated and the findings were that a combination of morphological and molecular biology studies are both needed to be able to establish a new updated pollen database for northern Sweden.
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Advancing Phage Genomics and Honeybee Health Through Discovery and Characterization of Paenibacillaceae BacteriophagesMerrill, Bryan Douglas 01 June 2015 (has links) (PDF)
The Paenibacillaceae family of bacteria includes two species known to infect the hives of honeybees, Paenibacillus larvae and Brevibacillus laterosporus. P. larvae, the causative agent of American Foulbrood (AFB) causes a lethal infection of honeybee larvae, while B. laterosporus is a secondary invader following European Foulbrood (EFB) infection. Increasing antibiotic resistance of P. larvae bacteria has prompted a search for alternative treatment methods for this disease. Bacteriophages are the most diverse life forms on earth and can provide important insights about the bacterial hosts they infect. However, few Paenibacillaceae phages have been isolated or characterized. In this study, the first B. laterosporus phages are characterized with respect to host range, structural morphology, and sequence similarity. The isolation and characterization of many P. larvae field isolates together with 38 novel P. larvae phages made possible the first broad phage typing study of P. larvae. Phage typing data indicated that P. larvae strains tested could be categorized into one of two groups. Comparative genomics of bacteriophages was made easier by modifying Phamerator to make it broadly accessible and usable to phage researchers throughout the world. Additionally, raw sequencing data can now be used to identify phage DNA packaging strategies that are indicative of a phage’s physical ends. Using these data, phage genomes can be published in an orientation and complementarity that reflects the physical structure of the phage chromosome, providing order and consistency that will benefit all future phage researchers.
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Evolution of symbiotic lineages and the origin of new traitsTamarit, Daniel January 2016 (has links)
This thesis focuses on the genomic study of symbionts of two different groups of hymenopterans: bees and ants. Both groups of insects have major ecological impact, and investigating their microbiomes increases our understanding of their health, diversity and evolution. The study of the bee gut microbiome, including members of Lactobacillus and Bifidobacterium, revealed genomic processes related to the adaptation to the gut environment, such as the expansion of genes for carbohydrate metabolism and the acquisition of genes for interaction with the host. A broader genomic study of these genera demonstrated that some lineages evolve under strong and opposite substitution biases, leading to extreme GC content values. A comparison of codon usage patterns in these groups revealed ongoing shifts of optimal codons. In a separate study we analysed the genomes of several strains of Lactobacillus kunkeei, which inhabits the honey stomach of bees but is not found in their gut. We observed signatures of genome reduction and suggested candidate genes for host-interaction processes. We discovered a novel type of genome architecture where genes for metabolic functions are located in one half of the genome, whereas genes for information processes are located in the other half. This genome organization was also found in other Lactobacillus species, indicating that it was an ancestral feature that has since been retained. We suggest mechanisms and selective forces that may cause the observed organization, and describe processes leading to its loss in several lineages independently. We also studied the genome of a species of Rhizobiales bacteria found in ants. We discuss its metabolic capabilities and suggest scenarios for how it may affect the ants’ lifestyle. This genome contained a region with homology to the Bartonella gene transfer agent (GTA), which is a domesticated bacteriophage used to transfer bacterial DNA between cells. We propose that its unique behaviour as a specialist GTA, preferentially transferring host-interaction factors, originated from a generalist GTA that transferred random segments of chromosomal DNA. These bioinformatic analyses of previously uncharacterized bacterial lineages have increased our understanding of their physiology and evolution and provided answers to old and new questions in fundamental microbiology.
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A argamassa cimento-vermiculita na constru??o de colm?ias modelo LangstrothCIDREIRA, Rodolfo Gon?alves 15 April 2003 (has links)
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Previous issue date: 2003-04-15 / FAPERJ / The expanded vermiculite is a light-weighted and cheap product that, for its thermal resistance, has become a valuable insulating material, oftently used in engineering. Brazilian Apiculture is currently facing some obstacles to produce wooden hives. Regarding the similar physical properties within the wood, the hives made of cement-vermiculite mortar (CVM) have been tested in order to find out if it shows also similar biological responses to the wooden hives. This study took place in a tropical region ((22?45?28"S, 43?41?05"W), during eight months. Standard Langstroth hives (n=20) were built, and used in an apiary containing Africanized honeybees colonies from equal strength (one super) and queen line. The CVM boxes and colonies were compared with control one (wooden made) in a completely randomized design, with two factors (beginning and end of the study, with and without bees) and 5 repetitions/treatment, which were used in order to test the colony performance patterns: thermal control, flight activity, area of wax comb production and storage of food, weight of the super, honey collected and its chemical analysis. The standard CVM hive (2 supers) weights about 21.66 kg and its cost requirement (US$15.19) was 28.50% cheaper than the wooden hives cost. There were no significant differences between the hives performance. The honey quality sampled in both types of material followed the pattern of the schedule chemical analysis. Although the experiment time was restricted, the results allow us to recommend this new material (CVM) to small or poor beekeepers, to regions that need wood extraction prevention and to tropical regions. For it cannot be transported, the CVM hives must not be used for migratory activity. Hives made of cement-vermiculite mortar have been studied for two years now, and more time is needed to further observations. / A vermiculita expandida ? um material isolante e muito utilizada pela engenharia. Nesta pesquisa, tendo como proposta a constru??o de caixas de abelhas com argamassa cimento-vermiculita (ACV), testou-se se este material apresenta respostas f?sicas e biol?gicas semelhantes ?s caixas constru?das de madeira. Esse estudo foi realizado em uma regi?o tropical (22?45?28"S, 43?41?05"W) durante oito meses. As caixas, modelo Langstroth, foram constru?das, instaladas e povoadas em um api?rio de col?nias de abelhas Africanizadas, com a mesma popula??o e parentesco da rainha. Acompanhou-se a temperatura interna, avaliou-se a condutividade t?rmica e a perda evaporativa das caixas de madeira e de ACV, n?o povoadas. Quando em col?nias, verificou-se seus padr?es de desempenho referentes ao controle t?rmico, da atividade de v?o, da ?rea de produ??o de favos e armazenamento de alimento, do peso da melgueira, do mel coletado e da sua qualidade qu?mica. As caixas e col?nias de ACV foram comparadas ?s de controle, de madeira, em um delineamento inteiramente casualizado, com dois n?veis de tratamento (tipo de material, in?cio e fim do estudo) e cinco repeti??es por tratamento, atrav?s da an?lise de vari?ncia. O peso da colm?ia padr?o ACV foi aproximadamente o dobro da de madeira e seu custo de US$15,19) foi 28,50% mais baixo que o da colm?ia de madeira. A temperatura m?dia interna das caixas e colm?ias de madeira e vermiculita foram semelhantes. Na caixa de ACV houve maior absor??o e perda mais r?pida de ?gua do que na de madeira. Apesar do controle t?rmico das col?nias de ACV, verificou-se que, eventualmente o intervalo da temperatura interna ultrapassou a faixa ?tima, o que pode ter ocasionado a redu??o da atividade de v?o, cuja diferen?a com a colm?ia de madeira foi significativa. A ?rea de forma??o de favos, de armazenamento de alimento e o peso do mel coletado n?o apresentaram diferen?as significativas, mas sofreram grande varia??o. A qualidade do mel amostrados nas colm?ias de ACV e madeira apresentaram-se dentro do padr?o rotineiro de an?lise qu?mica. Considerando-se que a caixa de ACV representa um modelo de constru??o artesanal, de baixo custo e caracter?sticas semelhantes ? caixa de madeira, sua utiliza??o torna-se mais uma alternativa vi?vel para o meio ap?cola, exceto para a atividade migrat?ria.
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