Thesis (MSc (Chemistry and Polymer Science))--University of Stellenbosch, 2009. / ENGLISH ABSTRACT: This thesis reports an in-depth investigation of the intermolecular interaction motifs in secondary, primary and ammonium carboxylate salts. The investigation was conducted using the Cambridge Structural Database (CSD), together with a systematic steric-specific experimental study. The tendency in the literature has been to analyse organic salt crystal structures in terms of hydrogen bonding patterns, almost ignoring cation-anion interactions. This study focuses on the cation-anion interactions in secondary, primary and ammonium carboxylate salts, which have a direct effect on the formation of specific structural motifs. The ideas of ring-stacking and ring-laddering, which arise from the tendency of cations and anions to arrange themselves so as to maximise electrostatic interactions, have been applied to ammonium carboxylate salts. An extensive survey of organic ammonium carboxylate salt structures in the CSD has been carried out. The structural motifs in ammonium carboxylates were investigated, and a set of predictive rules for the pattern of intermolecular interactions in these salts was developed. Using these results, the formation of ring-stacking or ring-laddering in primary ammonium carboxylate salts can be predicted. The results from the CSD survey are discussed in Chapter 3. An experimental study has been carried out, which complements the results obtained from the CSD survey. The experimental study formed 19 novel ammonium carboxylate salts, of which 2 formed hydrates and 2 co-crystals of salts. The experimental results confirm what was found in the CSD survey, and this is discussed in Chapter 4. This study has found that the principle of ring-stacking and ring-laddering can be applied in a general form to the crystal structures of organic ammonium carboxylate salts. The size of the cation and the anion in these salts has a significant effect on the formation of structural motifs in the solid state. Interactions between cation and anion substituents also play an important role in the formation of particular structural motifs in ammonium carboxylate salts. / AFRIKAANSE OPSOMMING: In hierdie tesis word die intermolekulêre interaksie motiewe in die sekondêre, primêre en ammonium karbosilaat soute in-diepte ondersoek. Die studie is gedoen met behulp van die Cambridge Strukturele Databasis (CSD), saam met ‟n sistematiese steriesspesifieke eksperimentele studie. Die neiging in die literatuur is om organiese sout kristal strukture in terme van waterstofbindings patrone te analiseer sonder om katioon-anioon interaksies in ag te neem. Die studie fokus juis op hierdie katioon-anioon interaksies tussen sekondêre, primêre en ammonium karbosilaat soute wat ‟n direkte effek het op die vorming van spesifieke strukturele motiewe naamlik „ring-stacking‟ en „ring-laddering‟ wat hul oorsprong kry vanaf die neiging van katione en anione om hulself op so ‟n wyse te rangskik sodat die elektrostatiese interaksies ‟n maksimum kan bereik, op die ammonium karboksilaat soute. ‟n Volledige ondersoek van ammonium karboksilaat soute in die CSD is gedoen. Die strukturele motiewe in ammonium karboksilaat is ondersoek, en ‟n stel reels wat die patrone van intermolekulêre interaksies in hierdie soute voorspelis ontwikkel. Hierdie resultate kan gebruik word om die vorming van „ring-stacking‟ en „ring-laddering‟ in primêre ammonium karbosilaat soute te voorspel. Die resultate van die CSD ondersoek word bespreek in Hoofstuk 3. ‟n Eksperimentele studie is uitgevoer en die resultate hiervan komplimenteer die resultate van die CSD ondersoek. In die eksperimentele studie is 19 nuwe ammonium karboksilaat soute gekristaliseer, waarvan 2 hidraat-soute en 2 ko-kristal-van-soute is. Die eksperimentele resultate bevestig die bevindings van die CSD ondersoek, en dit word bespreek in Hoofstuk 4. Hierdie studie het gevind dat die beginsel van „ring-stacking‟ en „ring-laddering‟ kan in „n algemene vorm in die kristal strukture van organiese ammonium karboksilaat soute toegepas word. Die grootte van die katioon en anion in hierdie soute het ‟n beduidende effek op die vorming van strukturele motiewe in die vaste toestand. Interaksie tussen die katioon en anioon substituente speel „n belangrike rol in die vorming van spesifieke motiewe in ammonium karbosilaat soute.

Atoms construct the molecules and molecules construct the material substances (with the exceptions as well, e.g.., metals, where atoms directly construct the material substances). Intermolecular interactions play an important role in most of the branches of sciences, ranging from material sciences to biological sciences. Van der Waals interactions are weak intermolecular interactions while hydrogen bonding varies in strength from weak to strong (1 to 40 kcal/mol). The present work focuses on applying some theoretical methods (ab initio and Atoms in Molecules theory) on these interactions to differentiate them with physically meaningful parameters such as hydrogen bond radii and atoms in molecules theory parameters. 1)Defining and calculating H-bond radii have been done using atoms in molecules theory approach which can explain ruling out the presence or absence of an H-bond in an intermolecular interaction. 2) A blue-shift of 200 cm-1 for a weakly bound complex is unprecedented. Our studies on weakly bound complexes showed the blue-shift of 200 cm-1 for H3C•••CIF and shift has been found to be purely from the mixing of normal modes and not because of an interaction. 3)Methane, a symmetric top molecule can act both as H-bond acceptor and donor. The present work shows that methane is rather a better H-bond acceptor than a donor and all the calculated parameters are in favor of this description. 4) Microwave spectrometer is an ultimate tool (at least at present) for structural characterization of the weakly bound complexes accurately. The rotational spectrum of the weakly bound isotopomer weakly bound complexes accurately. The rotational spectrum of the weakly bound isotopomer 13CC5H6•••Ar, which is a symmetric top and gives only “B” rotational constant. Moreover, the A rotational constant of the complex is the same as the rotational constant for 13CC5H6, which has no dipole moment. C2H2 molecule is an astrophysically important molecule as it is present in asymptotic giant branch and T-type stars (Teff<3000K). Due to its various infrared active vibrational modes, C2H2 is one of the most important sources in cool stars. The production of C2H2 infrared spectroscopic data at high temperature is therefore essential to trace back physical characteristics of these objects and to model the radiative transfer in their envelope. The databases such as “HITRAN”, do not have enough data available for stimulating high temperature spectra. Keeping all these objectives in mind, high temperature emission spectrum of acetylene has been recorded around 3µm region of acetylene.

Submitted by ANA KARLA PEREIRA RODRIGUES (anakarla_@hotmail.com) on 2017-08-02T12:48:15Z No. of bitstreams: 1 arquivototal.pdf: 9118352 bytes, checksum: 10cb4965cf17b6691c55ca0de741b9d2 (MD5) / Made available in DSpace on 2017-08-02T12:48:15Z (GMT). No. of bitstreams: 1 arquivototal.pdf: 9118352 bytes, checksum: 10cb4965cf17b6691c55ca0de741b9d2 (MD5) Previous issue date: 2016-09-30 / Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPq / This work deals with the computational quantum study of structural, electronic, vibrational, hyperconjugative and topological of hydrogen complexes with Cl3CH and F3CH donors, with the aceptor species proton, C2H2, C2H4, C3H4, C3H6 and C4H4, interacting with a region high electron density of the type π and pseudo-π. The computational methods used electronic structure were Density Functional Theory with functional hybrids B3LYP and X3LYP with Perturbative and Theory of many bodies of order 2, with a series of bases. The amounts of hydrogen bond energy suffered superposition error corrections of the Basic Feature Set and Vibrational Zero Point Energy. The complexes of hydrogen with the donor Cl3CH showed increases in the length of the C-H bond, while the present F3CH shortening of the C-H bond length due to formation of intermolecular bond. This trend is found for the deviation in the infrared spectrum, Chloroform has red shift while Fluoroform has blue shift deviations. The use of quantum theory of atoms in molecules shows the change in electron density of both interacting species, and in addition the density values are small and the Laplacian are positive. The methods followed the same trend for the properties of interest, suggesting the use of calculations via density functional theory, due to lower computational demand to study such systems. / Este trabalho trata do estudo quântico computacional de propriedades estruturais, eletrônicas, vibracionais, hiperconjugativas e topológicas dos complexos de hidrogênio com doadores Cl3CH e F3CH, com as espécies receptoras de próton, C2H2, C2H4, C3H4, C3H6 e C4H4, interagindo com uma região de alta densidade eletrônica do tipo π e pseudo- π. Os métodos computacionais de estrutura eletrônica empregados foram a Teoria do Funcional da Densidade com os funcionais híbridos B3LYP e X3LYP e a Teoria Perturbativa de Muitos Corpos de ordem 2, com uma série de bases. Os valores da energia da ligação de hidrogênio sofreram correções do Erro de Superposição do Conjunto de Funções de Base e da Energia Vibracional do Ponto Zero. Os complexos de hidrogênio com o doador Cl3CH apresentaram incrementos no comprimento da ligação C-H, enquanto o F3CH apresentam encurtamento do comprimento de ligação H-C, devido a formação da ligação intermolecular. Essa tendência é encontrada para o desvio no espectro infravermelho, o Clorofórmio apresenta red shift enquanto o Fluorfórmio tem desvios blue shift. O emprego da teoria quântica de átomos em moléculas evidencia a mudança na densidade eletrônica de ambas as espécies interagentes, e, além disso os valores da densidade são pequenos e do laplaciano da densidade são positivos. Os métodos empregados seguiram a mesma tendência para as propriedades de interesse, sugerindo o uso de cálculos via teoria do funcional da densidade, devido a menor demanda computacional, para estudar sistemas desse tipo. Palavras-Chave: Ligação de Hidrogênio Intermolecular, DFT/B3LYP, DFT/X3LYP, MP2 e QTAIM.

Made available in DSpace on 2015-05-14T13:21:30Z (GMT). No. of bitstreams: 1 arquivototal.pdf: 4538639 bytes, checksum: 981ce0eef0681003af97d1a8046c66ee (MD5) Previous issue date: 2013-08-06 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / The aim of this work was to study two kinds of intermolecular hydrogen bonding, the non-usual that is represented by the interaction between acetylene and the HX species (C2H2 --- HX) and the usual that is represented by the interaction between hydrogen cyanide and HX species, with X = F, Cl, CN, and HCCH. This interaction promotes changes in the structural, electronic and vibrational properties of the species involved. In this work, we employe d not onlycomputational-quantum methods MP2/6-311 + + G (d, p) and DFT/B3LYP/6-311 + + G (d, p) in order to study the structural, electronic and vibrational properties of those two types of intermolecular hydrogen bonding, but also we employed QTAIM and NBO methods to complement our research. The results have shown no significant differences between the two correlated methods employed for both types of hydrogen bonded complexes, leading us to suggest the use of the DFT/B3LYP method for studies of similar systems to those studied here, due to the lower computational demand. The increase in bond length of the HX species are enhanced due to formation of more linear complexes than T-complexes, in both calculation levels. The intermolecular bond length values in the complex HCN --- HX are smaller than in the complexes HCCH --- HX, and the values from MP2 and DFT/B3LYP are very close in each individual type of hydrogen complex, suggesting that the linear complexes are more stabilized by the formation of hydrogen bonding than the T-complexes, which can be proved by the values of the binding energy of hydrogen in HCN --- HX. Concerning the redshift effect in the harmonic vibrational mode of species HX, due to the formation of intermolecular bond, the values obtained for linear complexes hydrogen are higher than for the corresponding T-complexes, considering both calculation levels. Values were evaluated from the increase in the intensity values of the stretch mode HX bond formation due to intermolecular and, according to the model CCFOM, the term load flow is responsible for the effect on the increase of HX intensity. We also highlight the new vibrational modes, emphasizing the stretch mode of the intermolecular bond. From studies employing QTAIM, it was possible to obtain the values of electron density and the Laplacian electron density and evaluate these parameters in critical points in HX and intermolecular hydrogen bonding, thus confirming the formation of hydrogen bonded complexes. We evaluated the energy difference between π orbitals and lone pair of nitrogen (in HCN), for the species receiving proton and sigma antibonding for the hydrogen of HX, using the method of natural bond orbital variation. / O objeto de estudo deste trabalho foi a ligação de hidrogênio intermolecular de dois tipos, a não-usual representada pela interação entre o acetileno e espécies HX (C2H2---HX) e a usual representada pela interação entre o ácido cianídrico e espécies HX, com X=F, Cl, CN e HCCH. Esta interação provoca mudanças nas propriedades estruturais, eletrônicas e vibracionais das espécies envolvidas. Neste trabalho empregamos os métodos quântico-computacionais MP2/6-311++G(d,p) e DFT/B3LYP/6-311++G(d,p) para estudar as propriedades estruturais, eletrônicas e vibracionais dos dois tipos de ligação de hidrogênio intermolecular, além de complementar nossa investigação empregando os métodos QTAIM e NBO. Os resultados não mostraram diferenças significativas entre os dois métodos correlacionados empregados para ambos os tipos de complexos de hidrogênio, nos levando a sugerir o emprego do método DFT/B3LYP para estudos de sistemas semelhantes aos aqui estudados, devido a menor demanda computacional. Os valores de incremento no comprimento de ligação das espécies HX são mais acentuados devido à formação dos complexos lineares do que dos complexos-T, em ambos os níveis de cálculo. Os valores de comprimento de ligação intermolecular nos complexos HCN---HX são menores do que nos complexos HCCH---HX, sendo os valores MP2 e DFT/B3LYP bem próximos em cada tipo individual de complexo de hidrogênio, sugerindo que os complexos lineares são mais estabilizados pela formação da ligação de hidrogênio do que os complexos-T, fato que pode ser comprovado pelos valores da energia de ligação de hidrogênio em HCN---HX. Com respeito ao efeito redshift no modo vibracional harmônico das espécies HX, devido à formação da ligação intermolecular, os valores obtidos para os complexos de hidrogênio lineares são maiores do que para os correspondentes complexos-T, considerando ambos os níveis de cálculo. Foram avaliados os valores do incremento nos valores de intensidade do modo de estiramento de HX devido à formação da ligação intermolecular e, de acordo com o modelo CCFOM, o termo de fluxo de carga é o responsável pelo efeito no aumento da intensidade de HX. Foram ainda destacados os novos modos vibracionais, dando ênfase ao modo de estiramento da ligação intermolecular. Dos estudos empregando a QTAIM foi possível obter os valores da densidade eletrônica e do Laplaciano da densidade eletrônica e avaliar os valores desses parâmetros nos pontos críticos de ligação em HX e na ligação de hidrogênio intermolecular, comprovando dessa forma a formação dos complexos de hidrogênio. Com os estudos empregando o método dos orbitais naturais de ligação foi avaliada a diferença de energia entre os orbitais π (no acetileno) e o orbital do par de elétrons livres do nitrogênio (em HCN), para as espécies receptoras de próton, e o orbital sigma antiligante do hidrogênio em HX.

Three distinct aspects, disorder, polymorphism and co-crystal formation have been addressed in molecular crystals in terms of intra- and intermolecular interactions involving halogens, weak hydrogen bonds and van der Waals interactions. A basic introductory chapter highlights the importance of these three aspects followed by a foreword to the contents. Chapter 1 employs in situ cryo-crystallization techniques to study the crystal and molecular structures of compounds which are liquids at room temperature. Section 1.1 deals with the crystal structure analyses of low melting chloro- and bromo-substituted anilines which reveal both the importance of hydrogen bonds and weak interactions involving different halogens. The halogen⋅⋅⋅halogen interactions are compared with fluorine and iodine substituted compounds to bring out the relevance of both size and polarizability characteristics. Section 1.2 describes the crystal structures of benzyl derivative compounds utilizing the concept of in situ cryo-crystallization. This analysis brings out the correlation between acidity of benzyl derivative compounds with its preference of either a (sp2)C-H⋅⋅⋅π or (sp3)C-H⋅⋅⋅π interactions in the crystal packing. Chapter 2 consists of two sections dealing with the preference of halogen⋅⋅⋅halogen interactions in supramolecular chemistry. Section 2.1 discusses a statistically large number of crystal structures in halogen substituted benzanilide compounds. It reveals the importance of hetero halogen F⋅⋅⋅X (Cl, Br), homo halogen X⋅⋅⋅X (F, Cl, Br, I), C-X⋅⋅⋅π and C-H⋅⋅⋅F interactions in terms of their directionality and preferences to complement a primary N-H⋅⋅⋅O hydrogen bond in directing the three-dimensional supramolecular assembly. Section 2.2 deals with solvent induced polymorphism which highlights the role of weak interactions in two case studies. The preference and directionality of C-H⋅⋅⋅F and Cl⋅⋅⋅Cl interactions lead to dimorphic modifications in case of 3-chloro-N-(2-fluorophenyl)benzamide whereas in case of 2-iodo-N-(4-bromophenyl)benzamide the interactions are through C-H⋅⋅⋅π and I⋅⋅⋅I contacts. Further, the analysis is supported using morphological evidence, DSC (Differential scanning calorimetry) and Powder X-ray diffraction data. Chapter 3 has three sections, concentrating on disorder and its consequence in crystal structures. Section 3.1 discusses the apparent shortening of the C(sp3)–C(sp3) bond analysed via a variable temperature X-ray diffraction study in racemic 1,1′-binaphthalene-2,2′-diyl diethyl bis(carbonate). Variable temperature single crystal X-ray diffraction studies show that the shortening is entirely due to positional disorder and not due to thermal effects. A supercell formation at T≤150 K depicts the formation of a Z'= 2 structure. Section 3.2 deals with crystal structure analysis of Ethyl-4-(2-fluorophenyl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate which clarifies the discrepancy in the higher value of the residual electron density in the literature in terms of positional disorder of fluorine at ortho sites. The existence of fluorine atom at the para position on the phenyl ring of another isomeric molecule leads to disorder induced conformational polymorphism through the involvement of the ethyl group. The static disorder of ethyl group which is associated with only one molecule (Z′=2) could be resolved at 120 K. This supports the results of the previous section (3.1). Section 3.3 reports crystal structure analysis of disordered fluorine in benzanilide compounds. The preference of interactions involving fluorine in either ortho sites or meta sites could be one of the reasons for the positional disorder of both possible sites. With one of the structure showing high Z′ value due to differences in the occupancy of disordered fluorine atom. CSD (Cambridge Structural Database) analysis indicates that the percentage of disorder in halogenated crystal structures having halogen atom at either ortho site or meta site decreases from fluorine to iodine. Further, the analysis points out that the disorder in fluorine containing compounds is mostly localized at the fluorine position whereas for other halogenated disordered structures, the disorder appears at other parts of the molecule. Chapter 4 discusses co-crystal formation and analysis of intermolecular interactions. It consists of two sections. Section 4.1 discusses co-crystal formation of nicotinamide with benzoic acid and seven other derivatives by changing the functional group at different positions of benzoic acid. Hydroxyl (-OH) group at 4/3-postion of benzoic acid prefers phenol⋅⋅⋅pyridine synthon when at 2-position it prefers acid⋅⋅⋅pyridine synthon. The preference of amide anticatemer over dimer synthon is supported by additional C-H⋅⋅⋅O hydrogen bonds. In case of 3,5-dinitro-2-hydroxy benzoic acid, the disorder in hydroxyl (-OH) group at ortho site leads to salt formation. Section 4.2 describes co-crystal study of adenine and thymine (AT) as free nucleobases. This result reveals the formation of AT (2:1) complex with both Hoogsteen and “quasi-Watson-Crick” hydrogen bonds. The hydrogen bonded bases using the Hoogsteen and the “quasi-Watson-Crick” interactions generate a hexagonal supramolecular motif. Four water molecules are located inside the hexagonal void of this complex. A high temperature study on the same crystal shows that at 313K, one of the water molecules escapes from the lattice resulting in the small change in unit cell parameters. However, the space group remains the same and the hexagonal void remains unaltered. With further increase in temperature, the crystal deteriorates irreversibly which clearly brings out the importance of water molecule in the molecular recognition of adenine-thymine complex. Chapter 5 discusses crystal structure analysis of trans-atovaquone (antimalarial drug), its new polymorph form including one stereoisomer (cis) and five other derivatives with different functional groups. Based on the conformational features of these compounds and the characteristics of the nature of hydrogen bonding and other weak intra and intermolecular interactions, docking studies with cytochrome bc1 complex provide valuable insight into the atomistic details of protein-inhibitor interactions. The docking results reveal that atovaquone and its derivatives, owing to their nature of hydrogen bond and the propensity towards the formation of weaker hydrogen bonds involving the chlorine atom as well appear as good candidates for drug evaluation.

Thesis (MScEng (Process Engineering))--Stellenbosch University, 2008. / The general objective for this thesis is to assess the ability of cellular automata to model relatively complex processes or phenomena, in particular thermodynamic scenarios. The mass transfer in packing materials of distillation columns was selected as an example due to the sufficient level of complexity in the distillation process, and its importance in a wide range of applications. A literature survey on cellular automata that summarizes the information currently available in formal publications and the internet is included to provide a general overview on the basic theoretical principles and the application of cellular automata models in the process engineering industry. The literature study was also used to identify potential requirements for the new research project. The study objective includes the construction of a cellular automata model that is able to represent transition of solutes from the fluid on the micro-surfaces of packing materials to the by-passing vapour stream, as well as the steady-state equilibrium between evaporation and condensation. Iterated model parameters sufficient for the realistic modelling of mass transfer as a result of thermodynamic driving forces, are required to meet this objective. The model behaviour was compared and the parameters subsequently adjusted according to the behaviour that is theoretically expected from the system being simulated. Qualitative (although sometimes in a quantitative format) rather than quantitative observations and comparisons were made seeing that the model has not yet been calibrated. The model that has been developed to date is not able to simulate the individual effects of chemical and thermodynamic properties although a realistic simulation of the cumulative effect exerted by these factors, or change thereof, on a system has been achieved. The accuracy of the results that have been obtained by using iterated parameters cannot be guaranteed for scenarios that deviate too much from the systems that have already been modelled successfully. The trade-off between the ability of the model to incorporate the effect of polarization, its ability to represent separation, in particular the condensation of hydrophilic substances, for strong hydrophilic packing materials and its ability to incorporate a large number of species limits the range of scenarios that can be successfully modelled. The model is able to represent the effect of a declining driving force (difference between the component vapour pressure of the gas phase and that of the liquid phase) that is typical of a system which is allowed to reach equilibrium after an initial disturbance. The model is also able to represent an additional driving force for separation caused by the effect of intermolecular forces. The model also displays the potential ability to represent the effect of different surface structures of the packing material on the extent of separation achieved at steady state as well as the rate at which such steady state conditions have been achieved. The model must be correctly scaled to minimize inaccurate results. Although several adjustments are needed to eliminate some limitations, the model has proven itself worthy of further development due to its capability to represent the basic characteristics of mass transfer in packing materials.

Thesis (MSc (Chemistry and Polymer Science))--University of Stellenbosch, 2009. / Co-crystals are excellent materials for studying intermolecular interactions in the solid-state and can be used to further our knowledge of the balance between strong and weak intermolecular interactions. The O–H∙∙∙∙∙∙Narom synthon was chosen as the focus of this investigation of hydrogen bonding motifs. The starting materials selected all have two hydrogen bond donor and/or acceptor sites for the formation of extended networks. All molecules are also aromatic such that the influence of weaker π∙∙∙∙∙∙π interactions can be included in the study. Two 3x3 grids of related co-crystals were produced from these starting materials and are reported in this thesis as part of an ongoing investigation into a broader set of co-crystals. A part of the work describes the investigation of co-crystals prepared by the combination of related benzenediol and diazine isomers taken from a 3x3 grid. The solid-state structures of each of the six starting materials are discussed briefly to describe the nature of intermolecular interactions involved in the single component crystals. Trends in hydrogen-bonding patterns as well as the weaker interactions identified in the starting materials, can be used to recognise those in the subsequent multi-component crystals. Thirteen co-crystal compounds were obtained, of which twelve structures are novel. Each of these co-crystal structures is discussed in terms of intermolecular interactions and packing in the solid state. Hydrogen-bonding patterns and structural similarities are highlighted in related co-crystal structures as well as between co-crystals and their respective starting materials. The combination of benzenediol isomers with benzodiazine isomers yielded seven novel co-crystal structures in a second 33 grid is reported. The structure of phthalazine, which has not yet been reported, is included in addition to these co-crystals, while the structures of quinazoline and quinoxaline that were retrieved from the CSD are discussed briefly. Co-crystal structures are discussed individually, focusing on the intermolecular interactions that are significant to the structural architecture of the compound. Certain co-crystals that display structural similarities with structures of the 3x3 grid, as well as with co-crystals presented in Chapter 3, are discussed in the relevant sections. Lastly, two extended pyridyl diyne ligands that were synthesised for use in future co-crystallisation studies similar to those reported earlier are briefly highlighted. The crystal structures of the pure compounds and of a hydrate of one of the ligands were obtained and discussed briefly. To date only one of these structures has been reported in the literature.

The majority of pharmaceutical products are formulated as solids in the crystalline state. With the potential to exist in different crystalline modifications or polymorphs, each solid form bears its own physical and chemical properties, influencing directly bioavailability and manufacturability of the final dosage form. In view of the importance of crystalline form selection in the drug development process, it is imperative for pharmaceutical scientists to work arduously on various aspects of polymorphism, ranging from fundamental understanding of the phenomenon at the molecular level to practical utilization of a specific crystalline form. One common feature of organic crystals is the existence of distinct molecular conformations in different polymorphic structures, known as conformational polymorphism. Conformational polymorphs are routinely observed in drug development, produced when crystal growth conditions vary. Crystallization from solution involves nucleation and crystal growth, the mechanisms that influence the polymorphic outcome. The embryonic solute aggregate has been recognized to play a critical role in dictating the final crystal structure, and solution conditions are also known to drastically influence the self-association behavior of solute molecules during crystallization, affecting crystal packing of organic molecules. For the crystal growth of conformational polymorphs, changes in molecular conformation not only determine the growth kinetics, but also influence the nature and strength of interactions present in the crystal structures. How conformation and intermolecular interaction affect each other underlines the intricacy and the wonder of crystal growth of the organic. Thus, the overall goal of this research is to provide the fundamental understanding of the extent to which solution conditions influence the molecular conformation in the solid-state of a model drug, tolfenamic acid. By combining experimental studies with advanced computational tools, this dissertation offers novel insights into solution species during pre-nucleation and molecular packing of conformational polymorphs of tolfenamic acid. In-depth understanding of the underlying connection between molecular conformation and crystal packing will help advance the knowledge required for rational control of crystal growth.

Distant dipolar field (DDF)-based nuclear magnetic resonance is an active research area with many fundamental properties still not well understood. Already several intriguing applications have developed, like HOMOGENIZED and IDEAL spectroscopy, that allow high resolution spectra to be obtained in inhomogeneous fields, such as in-vivo. The theoretical and experimental research in this thesis concentrates on the fundamental signal properties of DDF-based sequences in the presence of relaxation (T1 and T2) and diffusion. A general introduction to magnetic resonance phenomenon is followed by a more in depth introduction to the DDF and its effects. A novel analytical signal equation has been developed to describe the effects of T2 relaxation and diffusing spatially modulated longitudinal spins during the signal build period of an HOMOGENIZED cross peak. Diffusion of the longitudinal spins results in a lengthening of the effective dipolar demagnetization time, delaying the re-phasing of coupled anti-phase states in the quantum picture. In the classical picture the unwinding rate of spatially twisted magnetization is no longer constant, but decays exponentially with time. The expression is experimentally verified for the HOMOGENIZED spectrum of 100mM TSP in H2O at 4.7T. Equations have also been developed for the case of multiple repetition steady state 1d and 2d spectroscopic sequences with incomplete magnetization recovery, leading to spatially varying longitudinal magnetization. Experimental verification has been accomplished by imaging the profile. The equations should be found generally applicable for those interested in DDF-based spectroscopy and imaging.

The localized model of a chemical bond has had a long and prominent role in chemistry, but situations of extended charge delocalization and dipole effects remain topics in need of greater understanding. Both orbital delocalization in isolated molecules and induced molecular dipoles in condensed phases serve to move electron density and influence the chemical and physical properties of a system. This dissertation studies these aspects of electronic structure for selected organic, inorganic, and organometallic systems by means of electronic structure calculations and photoelectron spectroscopy, which is well-suited for studying both intramolecular and intermolecular effects by providing a direct probe of orbital energies and characters. Photoelectron spectra of P₄ and AsP₃ reveal differences in the molecular symmetry and cationic state effects between the two molecules in Chapter 3. Despite these differences, AsP₃ is found to have electron delocalization and vibrational structures that are comparable to P₄. A similar study of the delocalized -system of 2H-1,2,3-triazole in Chapter 4 relates the vibrational structure in photoelectron spectroscopy data to a series of Rydberg excitations in the vacuum UV photoabsorption spectrum. Chapters 5 and 6 examine extended electronic structures in organometallic complexes. The electron delocalization and charge transfer between two Ru centers along a bridging ethynediyl ligand is studied in [CpRu(CO)₂]₂(μC≡C). Details of the Ru-alkynyl interaction were explored by comparing the spectra of CpRu(CO)₂C≡CMe with CpRu(CO)₂Cl, including the -backbonding ability of alkynyl ligands. Chapter 6 moves from the realm of intramolecular effects to intermolecular interactions to understand how surrounding media affect electronic properties of molecules. The reversal of ionization energies between the gas and solid phases of M(CO)₄dmpe and M(CO)₄dppe, where M = Mo, W, is explored with photoelectron spectroscopy. The surrounding molecular environment stabilizes the cation, resulting in this reversal that extends to core ionization energies. The variety of systems presented illustrates the wide applicability of photoelectron spectroscopy and computations to different electronic structure studies, including how gas phase results can be related to condensed phase studies. This work continues the progress of photoelectron spectroscopy from small molecules to larger molecular systems and even further to bulk systems.