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Modeling of ion behavior in inward rectifier potassium channels /Robertson, Janice L. January 2009 (has links)
Thesis (Ph. D.)--Cornell University, January, 2009. / Vita. Includes bibliographical references (leaves 192-205).
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Biologie de l'endothélium vasculaire isolé de souris transgéniques YAC67 et YAC84- modèles murins du syndrome de Down / Biology of vascular endothelium isolated from transgenic mice YAC67 and YAC84 -mouse models for Down syndromeTomczyńska, Magdelena 28 September 2009 (has links)
GIRK2 est situé sur le chromosome 21, dont la trisomie cause le syndrome de Down (DS). Les proportionss des sous-populations de lymphocytes T sont altérées, le nombre de lymphocytes B circulants est diminué. Notre hypothèse est un défaut de contrôle de la domiciliation/recirculation des leucocytes par les cellules endothéliales (CE). Les CE formant la paroi des vaisseaux, assurent la néovascularisation, interagissent avec les cellules circulantes, initient l’adhésion donc, la réponse immune. Pour élucider l’influence de GIRK2 sur la fonction des CE, un modèle cellulaire in vitro a été mis au point. Des lignées de CE furent établies à partir de: moelle osseuse, thymus, ganglions lymphatiques périphériques, plaques de Peyer et cerveau de souris transgéniques dotées de copies additionnelles du gène et de souris contrôles. La biologie de l’endothélium fut abordée quant aux molécules d’adhésion, et processus d’adhésion et d’angiogenèse. Les CE issues des souris transgéniques expriment différents niveaux de CD29, CD34, leurs propriétés d’adhésion des lymphocytes ainsi que d’angiogenèse sont dramatiquement affectées. Le profil d’expression des gènes des CE de souris transgéniques montrent que parmi les molécules d’adhésion, chimiokines et récepteurs, VEGFs et récepteurs, plus d’un quart des ARNm est considérablement modifié par rapport aux contrôles. Nos résultats montrent clairement que le gène GIRK2 influence la function endothéliale des patients atteints de DS. / GIRK2 is located on chromosome 21, which trisomy is the cause of Down syndrome (DS). In DS, among other features, proportions of T lymphocytes subpopulations are altered and number of circulating B cells are decreased. We hypothesized that it is due to the disturbed control of homing/recirculation of lymphocytes by endothelial cells (ECs). ECs constitute the vessel wall, achieve the neovascularisation, interact with circulating cells, initiate the adhesion process thus, immunological response. To assess the GIRK2 gene influence on the function of ECs, an in vitro cellular model was established. ECs lines were established from bone marrow, thymus, peripheral lymph nodes, Peyer’s patches and brain from transgenic mice with additional copies of the gene and from normal control mice. Endothelium biology was investigated in the aspect of adhesion molecules as well as processes of adhesion and angiogenesis. ECs from transgenic mice have altered levels of CD29, CD34, their adhesive properties towards lymphoid cells are affected and their angiogenic properties are drastically different. cDNA microarray display for the gene expression pattern of ECs from transgenic mice showed that among adhesion molecules, chemokines, chemokine receptors, VEGFs and VEGFs receptors, more than one fourth of the mRNA was significantly modified compared to controls. Presented results give clear evidence that GIRK2 gene can influence the function of endothelial cells in DS patients.
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Ionic conductances involved in the electrical activity of the canine gastrointestinal tract /Flynn, Elaine Rose Maria January 1999 (has links)
Thesis (Ph. D.)--University of Nevada, Reno, 1999. / Includes bibliographical references. Online version available on the World Wide Web.
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Molecular Mechanisms for Regulation of the G Protein-activated Inwardly Rectifying K^+ (GIRK) Channels by Protein Kinase CZHANG, Liyan, LEE, Jong-Kook, KODAMA, Itsuo 12 1900 (has links)
国立情報学研究所で電子化したコンテンツを使用している。
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Differential coupling of RGS3s and RGS4 to GPCR-GIRK channel signaling complexes /Jaén, Cristina. January 2006 (has links)
Dissertation (Ph.D.)--University of South Florida, 2006. / Includes vita. Includes bibliographical references (leaves 110-125). Also available online via the World Wide Web.
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Structural and interaction studies of PSD95 PDZ domain-mediated Kir2.1 clustering mechanismsRodzli, Nazahiyah January 2017 (has links)
PSD95 is the canonical member of the Membrane Associated Guanylate Kinase class of scaffold proteins. PSD95 is a five-domain major scaffolding protein abundant in the postsynaptic density (PSD) of the neuronal excitatory synapse. Within PSD95 three PDZ domains modulate protein-protein interactions by selectively binding to short peptide motifs of target proteins. Under the direction of the multivalent PDZ domain interactions, the interacting proteins tend to cluster at the PSD, a phenomenon that is critical for synaptic signalling regulation. Earlier studies have shown that the N-terminal PDZ domains of PSD95 are obligatory for the clustering to occur. This thesis focuses on the strong inwardly rectifying potassium channel, Kir2.1 as the PSD95 binding partner. Kir2.1 is known to maintain membrane resting potential and control cell excitability. Previous studies have reported that Kir2.1 clustered into ordered tetrad complexes upon association with PSD95.This study investigates the detailed clustering mechanisms of Kir2.1 by PDZ domains. To achieve this, components that are involved in the formation of a complex namely PSD95 sub-domains comprising single PDZ and the tandem N terminal PDZ double domain (PDZ1-2), and Kir2.1 cytoplasmic domains(Kir2.1NC) are studied in detail via different structural and biophysical approaches; 1) PDZ1-2 is examined in apo- and bound ligand form with a Kir2.1 Cterminal peptide in crystal and solution via X-ray crystallography and small angle X-ray scattering; 2) the tandem and the single PDZ domain interaction with ligand are measured thermodynamically via isothermal calorimetry (ITC); 3) the complex of full length PSD95 with Kir2.1NC is analyzed with electron microscopy (EM). The protein components are produced in high quality by protein expression and multiple-step protein purification techniques. PDZ1-2 crystallographic structures were solved at 2.02A and 2.19A in theapo- and the liganded forms respectively. The solution state analysis showed domain separation and structural extension of the tandem domain when incorporated with the ligand. The ITC experiment revealed PDZ1-2 to have greater affinity towards the peptide ligand relative to the single PDZ domains. These combinatorial outcomes lead to the conclusion that PSD95 clusters Kir2.1 by adopting an enhanced binding interaction which is associated with increased PDZ1-2 inter-domain separation. The preliminary analysis of PSD95-Kir2.1NC complex with cryo-EM showed the establishment of a tetrad and led to a reconstruction at 40A resolution. The work in obtaining a higher resolution complex structure is promising with further data collection required to allow the employment of more sophisticated model reconstruction processes.
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Reversal strategies within the lateral habenula to ameliorate depressive-like behaviors / Stratégies ciblant l’habénula latérale pour améliorer les symptômes de types dépressifsTchenio, Anna 08 December 2017 (has links)
L’agression de l'organisme par un agent physique, psychique ou émotionnel déclenche une réponse physiologique et comportementale qui permet à un individu de se prévenir du danger et de maintenir sa survie. Le système nerveux central a depuis longtemps été identifié comme un majeur acteur de cette réponse adaptative. Cependant, une exposition prolongée au stress conduit à des adaptations cellulaires et des réadaptations de circuits neuronaux qui contribuent à l'émergence de troubles neuropsychiatriques. L’interaction entre le système dopaminergique (DA) et sérotoninergique (5HT) a été impliquées dans ces réarrangements physiologiques et pathologiques qui influencent les comportements motivationnels de l'individu face à une menace. Fait intéressant, l'habenula latérale (Hbl), une région du cerveau très conservée entre les espèces, contrôle directement et indirectement les systèmes DA et 5HT, et son activité est modulée par des stimuli aversifs chez les humains et les animaux. De plus, l'activité de la Hbl est augmentée chez des modèles animaux de la dépression ou lors de l'induction d'un épisode dépressif chez des patients humains. Inversement, l’emploie de stratégies ayant pour cible la Hbl permettent d’améliorer certains symptômes dépressifs à la fois chez les modèles animaux de dépression et chez l’homme. Ainsi, la dérégulation de l’Hbl pourrait jouer un rôle dans l'apparition de symptômes dépressifs. Cependant, les changements moléculaires et cellulaires précoces qui occurrent au niveau de Hbl suite à l'exposition continue à un environnent aversifs restent peu connus. De plus, la plupart des modèles animaux utilisés pour interroger le rôle de Hbl dans l'état dépressif implique une exposition répétée de l’animal à des stimuli douloureux. Si la fonction de l’Hb est aberrante lors d’une exposition chronique à d’autre type de stress reste méconnu. Dans mon travail de thèse, je me suis intéressée aux adaptations cellulaires et moléculaires au niveau des neurones Hbl suite à l’exposition de différents types d'expériences aversives et leurs relatives importances pour l'expression de symptômes dépressifs. Plus précisément, je présente dans ce manuscrit, les résultats d'un premier travail qui vise à identifier les adaptations cellulaires et moléculaires de Hbl suite à l’exposition de souris à des chocs électriques et leurs rôles dans l'émergence de symptômes dépressifs. Cette étude montre que l’exposition à de brefs aléatoires chocs électriques entraine une diminution de l’expression de surface de récepteur métabotropiques gamma-aminobutyrate B (GABABRs), et par conséquent une diminution de leur fonction au niveau des neurones de l’Hbl. GABABR est un récepteur métabotropique couplé à la protéine Gi, il hyperpolarise les neurones de l’Hbl 4.par l'activation du canal potassique GIRK. La diminution de la signalisation GABABR-GIRK est accompagnée par une augmentation de l'activité de la protéine phosphatase 2 (PP2A), reconnue pour induire l’endocytose du complexe GABABR-GIRK. GABABR-GIRK contrôle étroitement l'activité Hbl, et par conséquent une diminution de leurs fonctions conduit à l’hyperexcitabilité des neurones de l’Hbl. En adoptant des stratégies visant à restaurer spécifiquement la signalisation GABABR-GIRK dans l’Hbl, telle que la surexpression GIRK, ou l'inhibition pharmacologique locale de l'activité PP2A, nous avons observé une amélioration de certains symptomes « dépressifs », établissant ainsi un lien causal entre l’aberrante diminution du signal GABABR et certain aspect de l’état dépressifs. / Prolonged exposure to aversive stimuli leads to cellular and circuit adaptations that contribute to the emergence of neuropsychiatric disorders such as depression. Interactions between the dopaminergic (DA) and the serotoninergic (5HT) systems have been implicated in these pathological adaptations ultimately influencing motivated behaviors. Interestingly, the lateral habenula (LHb), an ethologically well-conserved epithalamic region, directly and indirectly controls DA and 5HT systems, and its activity is modulated by aversive events in both humans and animals. Moreover, the activity of the LHb increases in animal models of depression and depressed human patients. Conversely, strategies that locally target the LHb have been shown to reverse depressive-like symptoms both in animal models and in humans. Altogether, this led to the hypothesis that LHb dysregulation could play a role in the emergence of depressive like symptoms. However, little is known about the early cellular and molecular adaptations that occur within the LHb after exposure to aversive events. Moreover, most of the animal models employed to interrogate the LHb role in depressive states used acute painful stimuli; whether LHb function becomes aberrant after chronic exposure to painless stressors remain elusive. In my thesis work, I explored the precise cellular and molecular adaptations of LHb neurons following exposure to different kind of unpredictable aversive experiences, and their importance for the expression of depressive like symptoms.More precisely, I will present the results of an initial work aiming to identify early cellular and molecular adaptations within the LHb following unpredictable stimuli and their importance for the emergence of depressive symptoms. This study shows that unpredictable foot-shocks lead to decreased surface expression and function of the gamma-aminobutyrate receptor (GABABR), a metabotropic receptor that hyperpolarizes LHb neurons through the activation of the G protein-coupled inwardly-rectifying potassium channels (GIRKs). This decrease of GABABR-GIRK signaling went along with an upregulation of the activity of the protein phosphatase 2 (PP2A), which is a well-known down-regulator of GABAB-GIRK complex surface expression. GABABR-GIRK signaling tightly controls LHb activity, and its downregulation consequently leads to aberrant hyperexcitability of LHb neurons. Using specific strategies to restore the GABABR-GIRK signaling within the LHb, such as GIRK overexpression, or local pharmacological inhibition of PP2A activity, we were able to ameliorate depressive like states following unpredictable foot-shocks. The second study allowed instead to establish the cellular adaptations within the LHb following a chronic non-painful aversive experience and during a critical developmental period. I showed that exposure to maternal separation in childhood (MS mice) also leads to depressive like symptoms together with a hyperexcitability of LHb neurons. This stress-driven increase in LHb activity was causally linked to a decrease of the GABABR-GIRK signaling. Moreover, using diverse reversal strategies such as chemogenetics or a therapeutically-relevant intervention such as Deep Brain Stimulation (DBS), we could selectively decrease LHb neuronal activity and consequently ameliorate the depressive like symptoms, suggesting a causal link between these two phenotypes.Altogether, the work presented in this thesis suggests that LHb neuronal hyperexcitability could represent a common substrate necessary for the expression of certain aspects of the depressive like state and further supports its relevance as a potential target in the treatment of this disorder.
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Autoregulation of the Human Cerebrovasculature by Neurovascular CouplingFarr, Hannah Abigail January 2013 (has links)
Functional hyperaemia is an important mechanism by which increased neuronal activity is
matched by a rapid and regional increase in blood supply. This mechanism is facilitated by a
process known as “neurovascular coupling” – the orchestrated communication system involving
the cells that comprise the neurovascular unit (neurons, astrocytes and the smooth muscle
and endothelial cells lining arterioles). Blood flow regulation and neurovascular coupling are
altered in several pathological states including hypertension, diabetes, Alzheimer’s disease,
cortical spreading depression and stroke.
By adapting and extending other models found in the literature, we create, for the first
time, a mathematical model of the entire neurovascular unit that is capable of simulating two
separate neurovascular coupling mechanisms: a potassium- and EET-based and a NO-based
mechanism. These models successfully account for several observations seen in experiment.
The potassium/EET-based mechanism can achieve arteriolar dilations similar in magnitude
(3%) to those observed during a 60-second neuronal activation (modelled as a release of potassium
and glutamate into the synaptic cleft). This model also successfully emulates the paradoxical
experimental finding that vasoconstriction follows vasodilation when the astrocytic calcium
concentration (or perivascular potassium concentration) is increased further. We suggest
that the interaction of the changing smooth muscle cell membrane potential and the changing
potassium-dependent resting potential of the inwardly rectifying potassium channel are responsible
for this effect. Furthermore, our simulations demonstrate that the arteriolar behaviour is
profoundly affected by depolarization of the astrocytic cell membrane, and by changes in the
rate of perivascular potassium clearance or the volume ratio between the perivascular space and
astrocyte.
In the modelled NO-based neurovascular coupling mechanism, NO exerts its vasodilatory
effects via neuronal and endothelial cell sources. With both sources included, the model
achieves a 1% dilation due to a 60-second neuronal activation. When the endothelial contribution
to NO production is omitted, the arteriole is more constricted at baseline. Without
the endothelial NO contribution, the arteriolar change in diameter during neuronal activity is
greater (6%). We hypothesize that NO has a dual purpose in neurovascular coupling: 1) it dixxxvi
rectly mediates neurovascular coupling through release by neuronal sources, and 2) it indirectly
modulates the size of the neurovascular coupling response by determining the baseline tone.
Our physiological models of neurovascular coupling have allowed us to replicate, and explain,
some of the phenomena seen in both neurovascular coupling-oriented and clinicallyoriented
experimental research. This project highlights the fact that physiological modelling
can be used as a tool to understand biological processes in a way that physical experiment cannot
always do, and most importantly, can help to elucidate the cellular processes that induce or
accompany our most debilitating diseases.
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Kir2 potassium channels in rat striatum are strategically localized to control basal ganglia functionPrüß, Harald 14 April 2004 (has links)
Der Morbus Parkinson ist die häufigste Erkrankung der Basalganglien und wird durch einen Abbau der dopaminergen Neurone in der Substantia nigra des Mittelhirns verursacht. Um Wege zu finden, die Nebenwirkungen bisheriger Therapien dieser Erkrankung zu vermeiden, sollten neue Angriffspunkte für pharmakologische Interventionen gesucht werden. Prinzipiell ist dabei jeder Schritt einer Signaltransduktions-Kaskade zu prüfen. Dazu gehören präsynaptische Transmitterfreisetzung, G-Protein-gesteuerte Effektormechanismen oder Veränderungen prä- und postsynaptischer Potentiale, wie sie durch ein bestimmtes lokales Ionenkanalmuster festgelegt werden. Aufgrund ihrer enormen molekularen Vielfalt bei gleichzeitig weiter, aber spezifischer Verbreitung, stellen Kaliumkanäle interessante Angriffspunkte für neue therapeutische Strategien dar. Die vorliegende Arbeit untersucht die zelluläre und subzelluläre Verteilung aller Mitglieder der Kir2-Familie, einer Gruppe von Proteinen, die einwärts-gleichrichtende Kaliumkanäle bildet. Zu diesem Zweck wurden polyklonale, monospezifische, affinitätsgereinigte Antikörper gegen den wenig konservierten carboxyterminalen Anteil der Kir2.1-, Kir2.2-, Kir2.3- und Kir2.4-Proteine hergestellt. Alle Untereinheiten der Kir2-Familie wurden an den Somata und Dendriten der meisten striatalen Neurone nachgewiesen. Zwei dieser Kanäle zeigten jedoch ein inhomogenes Verteilungsmuster: Das "patch"-Kompartiment des Striatums wurde von der Expression des Kir2.3-Kanals ausgespart, und das Kir2.4-Protein wurde am stärksten auf den tonisch aktiven, cholinergen striatalen Interneuronen exprimiert. Diese beiden Strukturen stellen die Schlüsselstellen für die Kontrolle und Regulation der dopaminergen und cholinergen Transmission im Striatum dar, weswegen ihnen eine zentrale Rolle für die efferenten Projektionen der Basalganglien zukommt. Die nachgewiesene heterogene Lokalisation der Kir2.3- und Kir2.4-Untereinheit an diesen strategisch relevanten Strukturen macht diese Kanäle zu viel versprechenden Angriffspunkten für zukünftige Pharmakotherapien. / Parkinson’s disease is the most frequent movement disorder caused by loss of dopaminergic neurons in the midbrain. Intentions to avoid side effects of conventional therapy should aim to identify additional targets for potential pharmacological intervention. In principle, every step of a signal transduction cascade, such as presynaptic transmitter release, type and occupation of postsynaptic receptors, G protein-mediated effector mechanisms, and the alterations of pre- or postsynaptic potentials as determined by the local ion channel composition, have to be considered. Due to their diversity and their widespread but distinct localizations, potassium channels represent interesting candidates for new therapeutic strategies. As a first step, the present report aimed to study the cellular and subcellular distribution of the individual members of the Kir2 family in the striatum, a group of proteins forming inwardly rectifying potassium channels. For this purpose polyclonal, monospecific, affinity purified antibodies against the less conserved carboxyterminal sequences from the Kir2.1, Kir2.2, Kir2.3, and Kir2.4 proteins were prepared. All subunits of the Kir2 family were detected on somata and dendrites of most striatal neurons. However, the distribution of two of them was not homogeneous. Striatal patch areas were largely devoid of the Kir2.3 protein, and the Kir2.4 subunit was most prominently expressed on the tonically active, giant cholinergic interneurons of the striatum. These two structures are among the key players in regulating dopaminergic and cholinergic neurotransmission within the striatum, and therefore are of major importance for the output of the basal ganglia. The heterogeneous localization of the Kir2.3 and the Kir2.4 subunits with respect to these strategic structures pinpoints these channel proteins as promising targets for future pharmacological efforts.
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Hydrogen Sulfide Regulation of Kir ChannelsHa, Junghoon 01 January 2017 (has links)
Inwardly rectifying potassium (Kir) channels establish and regulate the resting membrane potential of excitable cells in the heart, brain and other peripheral tissues. Phosphatidylinositol- 4,5-bisphosphate (PIP2) is a key direct activator of ion channels, including Kir channels. Gasotransmitters, such as carbon monoxide (CO), have been reported to regulate the activity of Kir channels by altering channel-PIP2 interactions. We tested, in a model system, the effects and mechanism of action of another important gasotransmitter, hydrogen sulfide (H2S) thought to play a key role in cellular responses under ischemic conditions. Direct administration of sodium hydrogen sulfide (NaHS), as an exogenous H2S source, and expression of cystathionine γ-lyase (CSE), a key enzyme that produces endogenous H2S in specific brain tissues, resulted in comparable current inhibition of several Kir2 and Kir3 channels. A “tag switch” assay provided biochemical evidence for sulfhydration of Kir3.2 channels. The extent of H2S regulation depended on the strength of channel-PIP2 interactions: H2S regulation was attenuated when strengthening channel-PIP2 interactions and was increased when channel-PIP2 interactions were weakened by depleting PIP2 levels via different manipulations. These H2S effects took place through specific cytoplasmic cysteine residues in Kir3.2 channels, where atomic resolution structures with PIP2 gives us insight as to how they may alter channel-PIP2 interactions. Mutation of these residues abolished H2S inhibition, and reintroduction of specific cysteine residues into the background of the mutant lacking cytoplasmic cysteine residues, rescued H2S inhibition. Molecular dynamics simulation experiments provided mechanistic insights as to how sulfhydration of specific cysteine residues could lead to changes in channel-PIP2 interactions and channel gating.
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