Cette thèse s'est attachée à décrire le concept dynamique d'une activité microbiologique viable et durable en conditions de stockage géologique profond et à évaluer son impact sur les propriétés de confinement et les composants du stockage. Ainsi, dans cette étude, un modèle bactérien basé sur la ferriréduction a été choisi pour ses critères de viabilité dans le système et sa capacité à altérer les matériaux dans les conditions du stockage. Les principaux résultats de ce travail de thèse ont permis de démontrer la capacité du milieu à supporter l'activité bactérienne ferriréductrice et les conditions de son développement dans les environnements argileux profonds. Il a été clairement montré la biodisponibilité du Fe(III) structural des matériaux argileux et des oxydes de fer produits lors des processus de corrosion métallique. Dans ce système, la corrosion paraît être un facteur positif pour les activités bactériennes notamment en produisant une source énergétique, l'hydrogène. Les activités bactériennes ferriréductrices peuvent entraîner une reprise de la corrosion métallique via la consommation des oxydes de fer de la couche passivante. La conséquence directe pourrait être une diminution de la durée de vie des enveloppes métalliques de colisage. Dans le cas des matériaux argileux ferrifères, les conséquences d'une telle activité sont telles qu'elles peuvent avoir un impact sur l'ensemble de l'édifice poreux que ce soit en termes de réactivité chimique des matériaux ou de comportement physique de la barrière argileuse. Un des résultats les plus marquants est la cristallisation de nouvelles phases argileuses à des températures très basses, inférieures à 40°C, témoignant de l'influence considérable de l'activité microbienne anaérobie dans les transformations minéralogiques des minéraux argileux. De plus, il faut noter que ces expériences ont permis de visualiser pour la première fois un mécanisme de respiration bactérienne à distance via une extension de la disponibilité d'éléments essentiels, ici le Fe3+. En conclusion, ces résultats ont clairement démontré l'impact du facteur microbiologique sur la réactivité des matériaux argileux et métalliques tout en s'appuyant sur des paramètres de contrôle de l'activité bactérienne. La pertinence de la prise en compte de ces activités microbiologiques dans le cas des évaluations de sûreté d'un stockage est ainsi établie. / This thesis sought to describe the dynamic concept of a viable and sustainable microbiological activity under deep geological disposal conditions and to assess its impact on containment properties and storage components. Thus, in this study, a model based on the bacterial ferric reduction was chosen for its sustainability criteria in the system and its ability to alter the materials in storage conditions. The main results of this work demonstrated the capability of the environment to stand the iron-reducing bacterial activity and the conditions of its development in the deep clay environments. The bio-availability of structural Fe (III) in clay minerals and iron oxides produced during the process of metal corrosion was clearly demonstrated. In this system, the corrosion appears to be a positive factor on bacterial activities by producing an energy source, hydrogen. The iron-reducing bacterial activities can lead to a resumption of metallic corrosion through the consumption of iron oxides in the passive film. The direct consequence would be a reduction of the lifetime of metal containers. In the case of ferric clay minerals, the consequences of such an activity are such that they can have an impact on the overall porous structure both in terms of chemical reactivity of the materials or physical behavior of the clayey barrier. One of the most significant results is the crystallization of new clay phases at very low temperatures, below 40°C, highlighting the influence of the anaerobic microbial activity in the mineralogical transformations of clay minerals. Furthermore, these experiments also allowed to visualize, for the first time, a mechanism of bacterial respiration at distance, this increases the field of the availability of essential elements as Fe3+ for bacterial growth in extreme environment. In conclusion, these results clearly showed the impact of the microbiological factor on the reactivity of clay and metal minerals, while relying on control parameters on bacterial activity. The relevance of taking into account these microbiological activities in the case of safety assessments of a repository is then established.

No description available.

Pelagic aggregates function as biological carbon pumps for transporting fixed organic carbon to sediments. In iron-rich (ferruginous) lakes, photoferrotrophic and chemolithoautotrophic bacteria contribute to CO2 fixation by oxidizing reduced iron, leading to the formation of iron-rich pelagic aggregates (iron snow). The significance of iron oxidizers in carbon fixation, their general role in iron snow functioning and the flow of carbon within iron snow is still unclear. Here, we combined a two-year metatranscriptome analysis of iron snow collected from an acidic lake with protein-based stable isotope probing to determine general metabolic activities and to trace 13CO2 incorporation in iron snow over time under oxic and anoxic conditions. mRNA-derived metatranscriptome of iron snow identified four key players (Leptospirillum, Ferrovum, Acidithrix, Acidiphilium) with relative abundances (59.6–85.7%) encoding ecologically relevant pathways, including carbon fixation and polysaccharide biosynthesis. No transcriptional activity for carbon fixation from archaea or eukaryotes was detected. 13CO2 incorporation studies identified active chemolithoautotroph Ferrovum under both conditions. Only 1.0–5.3% relative 13C abundances were found in heterotrophic Acidiphilium and Acidocella under oxic conditions. These data show that iron oxidizers play an important role in CO2 fixation, but the majority of fixed C will be directly transported to the sediment without feeding heterotrophs in the water column in acidic ferruginous lakes.

<p>This doctoral research comparatively assesses the biogeochemical properties of suspended aquatic flocs through a integrated field-laboratory approach; providing new insight into the linkages among floc associated bacteria, floc-reactive solid phases and trace metal uptake.</p> <p>Results show flocs to possess a distinct geochemistry, microbiology and composition from bed sedimentary materials in close proximity (III-oxyhydroxide minerals (FeOOH); resulting in localized floc-Fe-mineral precipitates and enhanced reactivity. Further, the Fe-enrichment of floc and of floc bio-mineral constituents in turn provides an important and novel lens through which to examine how environmental microbial communities, microbial metabolism and Fe^III/Fe^IIredox transformations interact. The results were the discovery of floc-hosted, Fe^III/II-redox cycling bacterial consortia across diverse oxygenated (O₂^Sat.=1-103%) aquatic systems, which were not predicted to sustain bacterial Fe-metabolism. Both environmental<em> </em>and experimentally-developed consortial aggregates constituted multiple genera of aero-intolerant Fe^III-reducing and Fe^II-oxidizing bacteria together with oxygen consuming organotrophic species. These findings highlight that the implementation of geochemical thermodynamic constraints alone as a guide to investigating and interpreting microbe-geosphere interactions may not accurately capture processes occurring <em>in situ.</em></p> <p><em> </em> Seasonal investigation of microbial Fe^III/II-redox transformations highlighted the interdependence of floc Fe-redox cycling consortia members, revealing that cold conditions and a turnover in putative Fe-reducing community membership extinguishes the potential for coupled Fe-redox cycling by wintertime floc bacteria. Further, the observed summer-winter seasonal turnover of <em>in situ</em> floc community membership corresponded with an overall shift from dominant Fe to S redox cycling bacterial communities. This significantly impacted observable floc Fe and TE (Cd, Pb) geochemistry, resulting in a shift in floc associated Fe-phases from dominantly Fe^(III)_(s) to Fe^(II)_(s), and, in turn, corresponded to a large decrease of TE uptake by flocs under ice.</p> / Doctor of Science (PhD)

La formation de méthylmercure, la forme la plus toxique du mercure, est due à l’activité bactérienne anaérobie. Afin de connaître la contribution des compartiments microbiens (biofilms, eaux brutes, sédiments) dans la méthylation du mercure, nous avons évalué les vitesses de méthylation d’échantillons de mares de région tempérée (Lorraine) et subarctique (Québec, Canada). Si les bactéries des biofilms ne semblent pas plus méthylantes que d’autres, le sédiment apparait comme le compartiment le plus méthylant en lien avec la concentration en nutriments ainsi qu’avec la température. Ainsi, les changements climatiques actuels, en augmentant la température de l’eau et en favorisant l’activité biologique, peuvent faire de ces mares des sites préférentiels de la méthylation du mercure en milieu subarctique. Enfin, l’activité des biofilms a mené à la formation de rouille verte, un minéral capable de réduire HgII en mercure élémentaire, concurrençant ainsi la méthylation bactérienne / Monomethylmercury formation, the neurotoxic form of mercury, is mainly linked to anaerobic microbial activity. In order to assess the relative contribution of several microbial compartments (biofilms, raw water and sediment) we evaluated methylation of samples from ponds of temperate area (Lorraine, France) and from subarctic ponds (Nunavik, Quebec). Biofilms were not found to specifically promote mercury methylation, whereas sediment emerges as the main compartment involved in mercury methylation. The formation of methylmercury is positively linked to the temperature and to nutrients. Thus, by increasing the open water period, the water temperature and of the microbial activity, current climate changes may turn these ponds in preferential location for mercury methylation in the subarctic ecosystem. Finally, the reactivity of green rust, a mineral which can be produced by bacterial activity of environmental biofilms, may compete with mercury methylation by reducing HgII into Hg0

Os fungos de decomposição branca e parda produzem enzimas para degradar os componentes da madeira, os primeiros produzem enzimas hidrolíticas e oxidativas enquanto os outros produzem principalmente enzimas hidrolíticas. A degradação de polissacarídeos e lignina por fungos de decomposição parda e branca seletiva, respectivamente, não ocorre na região imediata à hifa, e, também, não pode ser explicada unicamente por ação enzimática devido a impermeabilidade das mesmas na parede celular. Neste trabalho estudou-se o sistema degradativo não enzimático envolvendo compostos de baixa massa molar (CBMM) redutores de ferro em fungos degradadores de madeira. O fungo de decomposição parda, Wolfiporia cocos e o de decomposição branca seletiva, Perenniporia medulla-panis foram cultivados em diferentes concentrações de ferro, e a atividade redutora de Fe3+ micelial e a extracelular, assim como a produção de quelantes específicos de ferro, como derivados de ácido hidroxâmico e de catecol, foram induzidas em condição de deficiência de ferro. Os géis de SDS-PAGE dos extratos fúngicos mostraram várias proteínas negativamente reguladas por ferro em P. medulla-panis e W. cocos, principalmente para proteínas entre 10 - 30 kDa. Quando os fungos foram cultivados em diferentes fontes de carbono simples com e sem suplementação de celulose microcristalina e deficiência de ferro, produziram CBMM redutores de Fe3+, os quais tiveram a produção estimulada nos meios com celulose. Análises de eletroforese capilar dos compostos quelantes de metal extraídos dos meios que proporcionaram a maior atividade redutora (Lornitina/ celulose para P. medulla-panis e glicose/celulose para W. cocos) na presença e ausência de ferro, confirmaram que, principalmente P. medulla-panis produz compostos extracelulares que são regulados por ferro. Os CBMM purificados das frações < 5 kDa apresentaram atividade redutora de Fe3+ em pH 2,0 mesmo quando ácido oxálico foi adicionado na concentração 20 vezes maior que a concentração de Fe3+. Em pH 4,5, a atividade redutora foi detectada até uma concentração de ácido oxálico 10 vezes superior a de Fe3+. Em ambos os casos a atividade redutora foi observada quando Fe3+ estava presente na forma livre ou complexada como Fe(oxalato)+. Dentre os vários CBMM produzidos por P. medulla-panis e W. cocos aqueles com atividade redutora foram o ácido 4-hidroxi-fenilacético, 1,2-dihidroxi-3-metil-benzeno, 1,2,3-trihidroxi-benzeno e o ácido 4- hidroxi-cinâmico para W. cocos, e para P. medulla-panis os principais foram 1,2-dihidroxibenzeno e 1,2,3-trihidroxi-benzeno. Além desses compostos, ambos os fungos produziram peptídeos de baixa massa molar com atividade redutora. Os CBMM redutores de Fe3+ de P. medulla-panis (Pmp) e de W. cocos (Wc) foram utilizados na ausência e presença de Fe3+ e H2O2 (reação de Fenton mediada) para oxidar polissacarídeos e lignina in vitro. Verificou-se que os maiores níveis de oxidação foram obtidos nas reações de Fenton mediadas (Wc-Fe3+/H2O2 e Pmp-Fe3+/H2O2). A degradação da celulose por estes sistemas foi caracterizada por uma rápida e extensiva despolimerização, seguida de significativa oxidação. Análises dos monômeros de lignina liberados de conífera tratada e não tratada após 13C-TMAH termoquimólise indicaram oxidação da lignina pelos sistemas Wc-Fe3+/H2O2 e Pmp- Fe3+/H2O2, principalmente por desmetoxilação e/ou desmetilação. A ação sinérgica entre os CBMM redutores de Fe3+ e as enzimas ligninolíticas ficou evidenciada para os fungos de decomposição branca Lentinula edodes, P. medulla-panis e Trametes versicolor através da oxidação do corante Azure B. / Brown and white rot fungi produce enzymes to degrade wood. The former produce hydrolytic and oxidative enzymes while the latter produce mainly hydrolytic enzymes. The degradation of polysaccharides and lignin by brown and white-rot fungi, respectively, do not occur next to the fungal hyphae and cannot be explained only by the enzymatic action due to the small pore size of sound wood. In this work, it was studied a non-enzymatic degradative system involving low molecular weight compounds (LMWC) with Fe3+-reducing activity in wood decay fungi. The brown rot fungus Wolfiporia cocos and the selective white rot Perenniporia medulla-panis were grown under varying concentration of iron. The micelial and extracellular Fe3+-reducing activity as well as the production of specific iron chelators (catechol and hydroxamate derivatives) were induced under iron starvation. SDS-PAGE gels of cellular proteins showed several proteins negatively iron-regulated in P. medulla-panis and in W. cocos, especially for proteins of 10 - 30 kDa. When the fungi were grown with different simple carbon source with and without microcrystalline cellulose supplementation and under iron restriction, they produced LMWC with Fe3+-reducing activity, which production was stimulated in the presence of cellulose. Capillary electrophoresis analyses of metal chelating compounds extracted from the growth media that promoted the highest Fe3+-reducing activity (L-ornithine/cellulose for P. medulla-panis and glucose/cellulose for W. cocos) in the presence and absence of iron, confirmed that, especially P. medulla-panis produces extracellular compounds that are iron-regulated. LMWC purified from these media showed Fe3+-reducing activity at pH 2.0 even when oxalic acid was added up to 20 fold the iron concentration. At pH 4.5, the Fe3+-reducing activity was detected at an oxalic acid concentration up to 10 fold the iron concentration. In both cases the LMWC were capable of reducing Fe3+ only when it was in its free form or complexed with oxalate to form Fe3+-monooxalate complex (Fe(C2O4)+). Among the several LMWC produced by P. medulla-panis and W. cocos those with Fe3+-reducing capability were 4-hydroxy-phenylacetic acid, 1,2- dihydroxy-methyl-benzene, 1,2,3-trihydroxy-benzene and 4-hydroxy-cinnamic acid to W. cocos and 1,2-dihydroxy-benzene, and 1,2,3-tri-hydroxy-benzene to P. medulla-panis. Both fungi also produce low molecular weight peptides with Fe3+-reducing capability. The purified LMWC with Fe3+-reducing activity from P. medulla-panis (Pmp) and from W. cocos (Wc) were utilized in the presence and absence of Fe3+ and H2O2 (mediated Fenton reaction) to oxidize polysaccharides and lignin in vitro. The highest oxidation levels were obtained with mediated Fenton reactions (Wc-Fe3+/H2O2 e Pmp-Fe3+/H2O2). Cellulose degradation by these systems was characterized by a rapid and extensive depolymerization followed by significant oxidation. Analyses of the lignin monomers released from treated and untreated softwood after 13C-TMAH thermochemolysis indicated lignin oxidation by the Wc-Fe3+/H2O2 and Pmp-Fe3+/H2O2 systems, mainly by demethoxylation and/or demethylation. The synergistic action between LMWC with Fe3+-reducing activity and the ligninolytic enzymes was evidenced to the white rot fungi Lentinula edodes, P. medulla-panis and Trametes versicolor with Azure B oxidation assays.

O presente trabalho teve por objetivo avaliar a eficiência de remoção do surfactante aniônico alquilbenzeno linear sulfonado (LAS) em reator anaeróbio de leito granular expandido - EGSB (1,5 litros) com recirculação e alimentação com meio mineral. Além de caracterizar filogeneticamente a diversidade de bactérias na presença do surfactante. O sistema foi operado em condição mesofílica em 4 etapas: (I), (II) e (IV) com TDH de 32 horas, e (III) com TDH de 26 horas. Em todas as etapas a DQO foi em média de 609 \'+ OU -\' 137 mg/L e 14 \'+ OU -\' 1,71 mg/L de LAS afluente. As maiores remoções de LAS foram verificada nas etapas II e IV, com valores de 73,6 \'+ OU -\' 5,6% e 63,6 \'+ OU -\' 6,17%, respectivamente de. Na etapa III essa remoção foi de 47,8 \'+ OU -\' 6,2%. Por meio do balanço de massa constatou-se que 56,6% do total de LAS adicionado foram removidos compreendendo 48,4% por biodegradação e 8,2% por adsorção. A remoção de matéria orgânica não foi afetada com a adição do LAS e nem pela exposição prolongada a esse surfactante. Entretanto, a estrutura do grânulo foi comprometida quando da adição do surfactante, observado pelo aumento da concentração de sólidos totais efluente de 0,049 g/L na etapa I (sem LAS), 0,128 g/L na etapa II, 0,064 g/L na etapa III e 0,038 g/L na etapa IV, quando da adição de 14 \'+ OU -\' 1,71 mg LAS/L. Além disso, foi notada diminuição do diâmetro médio dos grânulos no decorrer da operação do reator de 0,36 cm nas etapas I e III para 0,34 cm na etapa IV. Por meio da técnica de tubos múltiplos (NMP) foi constatado aumento das bactérias anaeróbias totais e diminuição das arqueias metanogênicas, em função do tempo de operação do reator. As bactérias redutoras de ferro representaram 8% da biomassa anaeróbia na etapa IV. Por meio do seqüenciamento da região 16S do RNAr para o domínio Bacteria da biomassa da extremidade superior do reator e da biomassa do leito, foi verificado semelhança com os seguintes filos Proteobacteria, Firmicutes e Synergistetes. Notou-se diferença significativa entre as bibliotecas de clones para essas duas amostras. / This study aimed to evaluate the efficiency of removal of linear alkylbenzene sulfonate (LAS) in expanded bed reactor (1.5 liters) using granular sludge (EGSB) with recirculation and feed with mineral medium modified. The system was operated at mesophilic condition in four stages: (I) (II) and (IV) with HRT of 32 hours, and (III) with HRT of 26 hours. At all stages the COD averaged 609 \'+ OR -\' 137 mg/L and 14 \'+ OR -\' 1.71 mg/L LAS influent. The higher removals of LAS were found in stages II and IV, respectively, 73.6 \'+ OR -\' 5.6% and 63.6 \'+ OR -\' 6.17%. In stage III this removal was 47.8 \'+ OR -\' 6.2%. Through mass balance was found that 56.6% of total LAS added were removed by biodegradation comprising 48.4% and 8.2% by adsorption. The organic matter removal was not affected by the addition of LAS and not by prolonged exposure to this surfactant. However, the granule structure was compromised after the addition of surfactant, the observed increase in effluent total solids concentration of 0.049 g/L in stage I (no LAS), 0.128 g/L in stage II, 0.064 g/L in stage III and 0.038 g/L in stage IV when adding 14 \'+ OR -\' 1.71 mg/L. Furthermore, it was noticed significant decrease in mean diameter of the granules during the operation of the reactor of 0.36 cm in stages I and III to 0.34 cm in stage IV. Through the multiple tube method (MPN) was found to increase the total anaerobic bacteria and methanogenic archaea decreased depending on the time of reactor operation. Iron-reducing bacteria accounted for 8% of anaerobic bacteria total in step IV. By sequencing the 16S rRNA for the domain Bacteria biomass from the upper end of the reactor and the biomass of the bed, was found similar to the following phyla Proteobacteria, Firmicutes and Synergistetes. Significant difference was noted between the clone libraries for these two samples.

Os fungos de decomposição branca e parda produzem enzimas para degradar os componentes da madeira, os primeiros produzem enzimas hidrolíticas e oxidativas enquanto os outros produzem principalmente enzimas hidrolíticas. A degradação de polissacarídeos e lignina por fungos de decomposição parda e branca seletiva, respectivamente, não ocorre na região imediata à hifa, e, também, não pode ser explicada unicamente por ação enzimática devido a impermeabilidade das mesmas na parede celular. Neste trabalho estudou-se o sistema degradativo não enzimático envolvendo compostos de baixa massa molar (CBMM) redutores de ferro em fungos degradadores de madeira. O fungo de decomposição parda, Wolfiporia cocos e o de decomposição branca seletiva, Perenniporia medulla-panis foram cultivados em diferentes concentrações de ferro, e a atividade redutora de Fe3+ micelial e a extracelular, assim como a produção de quelantes específicos de ferro, como derivados de ácido hidroxâmico e de catecol, foram induzidas em condição de deficiência de ferro. Os géis de SDS-PAGE dos extratos fúngicos mostraram várias proteínas negativamente reguladas por ferro em P. medulla-panis e W. cocos, principalmente para proteínas entre 10 - 30 kDa. Quando os fungos foram cultivados em diferentes fontes de carbono simples com e sem suplementação de celulose microcristalina e deficiência de ferro, produziram CBMM redutores de Fe3+, os quais tiveram a produção estimulada nos meios com celulose. Análises de eletroforese capilar dos compostos quelantes de metal extraídos dos meios que proporcionaram a maior atividade redutora (Lornitina/ celulose para P. medulla-panis e glicose/celulose para W. cocos) na presença e ausência de ferro, confirmaram que, principalmente P. medulla-panis produz compostos extracelulares que são regulados por ferro. Os CBMM purificados das frações < 5 kDa apresentaram atividade redutora de Fe3+ em pH 2,0 mesmo quando ácido oxálico foi adicionado na concentração 20 vezes maior que a concentração de Fe3+. Em pH 4,5, a atividade redutora foi detectada até uma concentração de ácido oxálico 10 vezes superior a de Fe3+. Em ambos os casos a atividade redutora foi observada quando Fe3+ estava presente na forma livre ou complexada como Fe(oxalato)+. Dentre os vários CBMM produzidos por P. medulla-panis e W. cocos aqueles com atividade redutora foram o ácido 4-hidroxi-fenilacético, 1,2-dihidroxi-3-metil-benzeno, 1,2,3-trihidroxi-benzeno e o ácido 4- hidroxi-cinâmico para W. cocos, e para P. medulla-panis os principais foram 1,2-dihidroxibenzeno e 1,2,3-trihidroxi-benzeno. Além desses compostos, ambos os fungos produziram peptídeos de baixa massa molar com atividade redutora. Os CBMM redutores de Fe3+ de P. medulla-panis (Pmp) e de W. cocos (Wc) foram utilizados na ausência e presença de Fe3+ e H2O2 (reação de Fenton mediada) para oxidar polissacarídeos e lignina in vitro. Verificou-se que os maiores níveis de oxidação foram obtidos nas reações de Fenton mediadas (Wc-Fe3+/H2O2 e Pmp-Fe3+/H2O2). A degradação da celulose por estes sistemas foi caracterizada por uma rápida e extensiva despolimerização, seguida de significativa oxidação. Análises dos monômeros de lignina liberados de conífera tratada e não tratada após 13C-TMAH termoquimólise indicaram oxidação da lignina pelos sistemas Wc-Fe3+/H2O2 e Pmp- Fe3+/H2O2, principalmente por desmetoxilação e/ou desmetilação. A ação sinérgica entre os CBMM redutores de Fe3+ e as enzimas ligninolíticas ficou evidenciada para os fungos de decomposição branca Lentinula edodes, P. medulla-panis e Trametes versicolor através da oxidação do corante Azure B. / Brown and white rot fungi produce enzymes to degrade wood. The former produce hydrolytic and oxidative enzymes while the latter produce mainly hydrolytic enzymes. The degradation of polysaccharides and lignin by brown and white-rot fungi, respectively, do not occur next to the fungal hyphae and cannot be explained only by the enzymatic action due to the small pore size of sound wood. In this work, it was studied a non-enzymatic degradative system involving low molecular weight compounds (LMWC) with Fe3+-reducing activity in wood decay fungi. The brown rot fungus Wolfiporia cocos and the selective white rot Perenniporia medulla-panis were grown under varying concentration of iron. The micelial and extracellular Fe3+-reducing activity as well as the production of specific iron chelators (catechol and hydroxamate derivatives) were induced under iron starvation. SDS-PAGE gels of cellular proteins showed several proteins negatively iron-regulated in P. medulla-panis and in W. cocos, especially for proteins of 10 - 30 kDa. When the fungi were grown with different simple carbon source with and without microcrystalline cellulose supplementation and under iron restriction, they produced LMWC with Fe3+-reducing activity, which production was stimulated in the presence of cellulose. Capillary electrophoresis analyses of metal chelating compounds extracted from the growth media that promoted the highest Fe3+-reducing activity (L-ornithine/cellulose for P. medulla-panis and glucose/cellulose for W. cocos) in the presence and absence of iron, confirmed that, especially P. medulla-panis produces extracellular compounds that are iron-regulated. LMWC purified from these media showed Fe3+-reducing activity at pH 2.0 even when oxalic acid was added up to 20 fold the iron concentration. At pH 4.5, the Fe3+-reducing activity was detected at an oxalic acid concentration up to 10 fold the iron concentration. In both cases the LMWC were capable of reducing Fe3+ only when it was in its free form or complexed with oxalate to form Fe3+-monooxalate complex (Fe(C2O4)+). Among the several LMWC produced by P. medulla-panis and W. cocos those with Fe3+-reducing capability were 4-hydroxy-phenylacetic acid, 1,2- dihydroxy-methyl-benzene, 1,2,3-trihydroxy-benzene and 4-hydroxy-cinnamic acid to W. cocos and 1,2-dihydroxy-benzene, and 1,2,3-tri-hydroxy-benzene to P. medulla-panis. Both fungi also produce low molecular weight peptides with Fe3+-reducing capability. The purified LMWC with Fe3+-reducing activity from P. medulla-panis (Pmp) and from W. cocos (Wc) were utilized in the presence and absence of Fe3+ and H2O2 (mediated Fenton reaction) to oxidize polysaccharides and lignin in vitro. The highest oxidation levels were obtained with mediated Fenton reactions (Wc-Fe3+/H2O2 e Pmp-Fe3+/H2O2). Cellulose degradation by these systems was characterized by a rapid and extensive depolymerization followed by significant oxidation. Analyses of the lignin monomers released from treated and untreated softwood after 13C-TMAH thermochemolysis indicated lignin oxidation by the Wc-Fe3+/H2O2 and Pmp-Fe3+/H2O2 systems, mainly by demethoxylation and/or demethylation. The synergistic action between LMWC with Fe3+-reducing activity and the ligninolytic enzymes was evidenced to the white rot fungi Lentinula edodes, P. medulla-panis and Trametes versicolor with Azure B oxidation assays.

O presente trabalho teve por objetivo avaliar a eficiência de remoção do surfactante aniônico alquilbenzeno linear sulfonado (LAS) em reator anaeróbio de leito granular expandido - EGSB (1,5 litros) com recirculação e alimentação com meio mineral. Além de caracterizar filogeneticamente a diversidade de bactérias na presença do surfactante. O sistema foi operado em condição mesofílica em 4 etapas: (I), (II) e (IV) com TDH de 32 horas, e (III) com TDH de 26 horas. Em todas as etapas a DQO foi em média de 609 \'+ OU -\' 137 mg/L e 14 \'+ OU -\' 1,71 mg/L de LAS afluente. As maiores remoções de LAS foram verificada nas etapas II e IV, com valores de 73,6 \'+ OU -\' 5,6% e 63,6 \'+ OU -\' 6,17%, respectivamente de. Na etapa III essa remoção foi de 47,8 \'+ OU -\' 6,2%. Por meio do balanço de massa constatou-se que 56,6% do total de LAS adicionado foram removidos compreendendo 48,4% por biodegradação e 8,2% por adsorção. A remoção de matéria orgânica não foi afetada com a adição do LAS e nem pela exposição prolongada a esse surfactante. Entretanto, a estrutura do grânulo foi comprometida quando da adição do surfactante, observado pelo aumento da concentração de sólidos totais efluente de 0,049 g/L na etapa I (sem LAS), 0,128 g/L na etapa II, 0,064 g/L na etapa III e 0,038 g/L na etapa IV, quando da adição de 14 \'+ OU -\' 1,71 mg LAS/L. Além disso, foi notada diminuição do diâmetro médio dos grânulos no decorrer da operação do reator de 0,36 cm nas etapas I e III para 0,34 cm na etapa IV. Por meio da técnica de tubos múltiplos (NMP) foi constatado aumento das bactérias anaeróbias totais e diminuição das arqueias metanogênicas, em função do tempo de operação do reator. As bactérias redutoras de ferro representaram 8% da biomassa anaeróbia na etapa IV. Por meio do seqüenciamento da região 16S do RNAr para o domínio Bacteria da biomassa da extremidade superior do reator e da biomassa do leito, foi verificado semelhança com os seguintes filos Proteobacteria, Firmicutes e Synergistetes. Notou-se diferença significativa entre as bibliotecas de clones para essas duas amostras. / This study aimed to evaluate the efficiency of removal of linear alkylbenzene sulfonate (LAS) in expanded bed reactor (1.5 liters) using granular sludge (EGSB) with recirculation and feed with mineral medium modified. The system was operated at mesophilic condition in four stages: (I) (II) and (IV) with HRT of 32 hours, and (III) with HRT of 26 hours. At all stages the COD averaged 609 \'+ OR -\' 137 mg/L and 14 \'+ OR -\' 1.71 mg/L LAS influent. The higher removals of LAS were found in stages II and IV, respectively, 73.6 \'+ OR -\' 5.6% and 63.6 \'+ OR -\' 6.17%. In stage III this removal was 47.8 \'+ OR -\' 6.2%. Through mass balance was found that 56.6% of total LAS added were removed by biodegradation comprising 48.4% and 8.2% by adsorption. The organic matter removal was not affected by the addition of LAS and not by prolonged exposure to this surfactant. However, the granule structure was compromised after the addition of surfactant, the observed increase in effluent total solids concentration of 0.049 g/L in stage I (no LAS), 0.128 g/L in stage II, 0.064 g/L in stage III and 0.038 g/L in stage IV when adding 14 \'+ OR -\' 1.71 mg/L. Furthermore, it was noticed significant decrease in mean diameter of the granules during the operation of the reactor of 0.36 cm in stages I and III to 0.34 cm in stage IV. Through the multiple tube method (MPN) was found to increase the total anaerobic bacteria and methanogenic archaea decreased depending on the time of reactor operation. Iron-reducing bacteria accounted for 8% of anaerobic bacteria total in step IV. By sequencing the 16S rRNA for the domain Bacteria biomass from the upper end of the reactor and the biomass of the bed, was found similar to the following phyla Proteobacteria, Firmicutes and Synergistetes. Significant difference was noted between the clone libraries for these two samples.

Les effondrements miniers en Lorraine (France) ont pour origine la rupture des piliers de soutien constitués de minerai de fer. Leur rupture n'est pas seulement due aux seules contraintes mécaniques qu’exerce le recouvrement mais également aux différentes transformations minéralogiques du minerai de fer, compromettant sa cohésion et sa résistance et par conséquent, la stabilité des piliers. On parle alors d’altération/vieillissement minéralogique du minerai de fer. Les mécanismes chimiques qui entrainent ces transformations minéralogiques sont désormais bien connus mais l’influence de l’activité bactérienne n’est pas encore bien comprise. Des travaux préliminaires ayant soulevé le rôle possible des activités microbiennes, ce travail de thèse s'est alors appliqué à identifier les métabolismes bactériens susceptibles de réagir avec le minerai de fer en conditions aérobie et anaérobie, et à en caractériser les effets physico-chimiques, minéralogiques et mécaniques. Les groupes métaboliques bactériens suspectés d’être impliqués dans ces réactions (activités ferri-réductrices, ferro-oxydantes et sulfato-réductrices) ont été identifiés dans les eaux de mine et incubés en présence du minerai de fer, en souche pure ou avec un consortium issu de l’eau de mine. Les bactéries ferri-réductrices (IRB), sulfato-réductrices (BSR) et acidophiles ferro-oxydantes ont été les seules qui, dans les conditions de laboratoire, ont impacté significativement le minerai en modifiant le ratio Fe(II)/Fe(III). Une phase ferro-carbonatée et de la pyrite se sont formées respectivement au cours des incubations avec les IRB et BSR, et ont été caractérisées par analyse du solide (spectroscopies infrarouge en réflexion diffuse (DRIFTS) et Mössbauer et par diffraction aux rayons X). Des bactéries nitrate-réductrices ont aussi été testées et aucune modification significative du ratio Fe(II)/Fe(III) du minerai de fer n’a été observée. Enfin, les propriétés mécaniques du minerai de fer ont été mesurées après les réactions d’oxydo-réduction biologiques et purement chimiques. Des modifications sensibles de ces propriétés mécaniques par rapport à l’état initial ont ainsi pu être mises en évidence. Sur la base de ces résultats, l’hypothèse de l’altération mécanique du minerai de fer par des activités microbiennes est donc tout à fait réaliste. / Mine collapses occurred in Lorraine (France) because of the failure of safety pillars made of iron ore. Their failure is not only due to the mechanic stresses applied by the overburden, but also due to the various mineralogical transformations in iron ore which decrease material cohesion and resistance and thus stability of pillars. This is called mineralogical alteration/ageing of iron ore. Chemical mechanisms inducing these mineralogical transformations are now well known but the influence of microbial activity is not well understood yet. Preliminary works have raised the possible role of microbial activity, then the focus of this work was to identify the various bacterial metabolisms capable of reacting with iron ore and to characterize the physico-chemical, mineralogical and mechanical effects. The bacterial metabolism groups possibly implied in these reactions (iron-reducing (IRB), iron-oxidizing and sulfate-reducing bacteria (SRB)) were identified from the mine water. As pure strain or as consortium, these bacteria were incubated with iron ore. Under laboratory conditions, only iron-reducing, sulfate-reducing and acidophilic iron-oxidizing bacteria impacted iron ore samples by modifying the Fe(II)/Fe(III) ratio. A ferrous-carbonate phase and pyrite were formed during incubations with IRB and SRB, respectively. These minerals were characterized from analysis of the solid phase (Diffuse Reflectance Infrared Fourier Transform Spectroscopy (DRIFTS), Mössbauer spectroscopy and X-ray diffraction). The impact nitrate-reducing bacteria was also tested but the Fe(II)/Fe(III) ratio of iron ore was not modified significantly. Finally, mechanical properties of iron ore were measured after microbial and purely chemical redox reactions. Discernible modifications of these mechanical properties were observed. From these results, the alteration of iron ore mechanical properties by bacterial activities is a realistic assumption.