Global ETD Search

11	Concept Based Knowledge Discovery From Biomedical Literature Radovanovic, Aleksandar January 2009 (has links) Philosophiae Doctor - PhD / Advancement in biomedical research and continuous growth of scientific literature available in electronic form, calls for innovative methods and tools for information management, knowledge discovery, and data integration. Many biomedical fields such as genomics, proteomics, metabolomics, genetics, and emerging disciplines like systems biology and conceptual biology require synergy between experimental, computational, data mining and text mining technologies. A large amount of biomedical information available in various repositories, such as the US National Library of Medicine Bibliographic Database, emerge as a potential source of textual data for knowledge discovery. Text mining and its application of natural language processing and machine learning technologies to problems of knowledge discovery, is one of the most challenging fields in bioinformatics. This thesis describes and introduces novel methods for knowledge discovery and presents a software system that is able to extract information from biomedical literature, review interesting connections between various biomedical concepts and in so doing, generates new hypotheses. The experimental results obtained by using methods described in this thesis, are compared to currently published results obtained by other methods and a number of case studies are described. This thesis shows how the technology presented can be integrated with the researchers' own knowledge, experimentation and observations for optimal progression of scientific research. Bioinformaties Text mining PubMed Entity recognition Information extraction Relation Extraction Levenshtein distance Supervised classification Natural Language Processing Machine learning
12	Arquiteturas em hardware para o alinhamento local de sequências biológicas / Hardware architectures for local biological sequence alignment Mallmann, Rafael Mendes January 2010 (has links) Bancos de dados biológicos utilizados para comparação e alinhamento local de sequências tem crescido de forma exponencial. Isso popularizou programas que realizam buscas nesses bancos. As implementações dos algoritmos de alinhamento de sequências Smith- Waterman e distância Levenshtein demonstraram ser computacionalmente intensivas e, portanto, propícias para aceleração em hardware. Este trabalho descreve arquiteturas em hardware dedicado prototipadas para FPGA e ASIC para acelerar os algoritmos Smith- Waterman e distância Levenshtein mantendo os mesmos resultados obtidos por softwares. Descrevemos uma nova e eficiente unidade de processamento para o cálculo do Smith- Waterman utilizando affine gap. Também projetamos uma arquitetura que permite particionar as sequências de entrada para a distância Levenshtein em um array sistólico de tamanho fixo. Nossa implementação em FPGA para o Smith-Waterman acelera de 275 a 494 vezes o algoritmo em relação a um computador com processador de propósito geral. Ainda é 52 a 113% mais rápida em relação, segundo nosso conhecimento, as mais rápidas arquiteturas recentemente publicadas. / Bioinformatics databases used for sequence comparison and local sequence alignment are growing exponentially. This has popularized programs that carry out database searches. Current implementations of sequence alignment methods based on Smith- Waterman and Levenshtein distance have proven to be computationally intensive and, hence, amenable for hardware acceleration. This Msc. Thesis describes an FPGA and ASIC based hardware implementation designed to accelerate the Smith-Waterman and Levenshtein distance maintaining the same results yielded by general softwares. We describe an new efficient Smith-Waterman affine gap process element and a new architecture to partitioning and maping the Levenshtein distance into fixed size systolic arrays. Our FPGA Smith-Waterman implementation delivers 275 to 494-fold speed-up over a standard desktop computer and is also about 52 to 113% faster, to the best of our knowledge, than the fastest implementation in a most recent family of accelerators. Microeletrônica Aplicação dos computadores DNA sequence scanning Smith-Waterman Edit distanve Levenshtein distance Dynamic programming Systolic array FPGA ASIC VLSI Protein sequences Query sequence Subject sequence
13	Arquiteturas em hardware para o alinhamento local de sequências biológicas / Hardware architectures for local biological sequence alignment Mallmann, Rafael Mendes January 2010 (has links) Bancos de dados biológicos utilizados para comparação e alinhamento local de sequências tem crescido de forma exponencial. Isso popularizou programas que realizam buscas nesses bancos. As implementações dos algoritmos de alinhamento de sequências Smith- Waterman e distância Levenshtein demonstraram ser computacionalmente intensivas e, portanto, propícias para aceleração em hardware. Este trabalho descreve arquiteturas em hardware dedicado prototipadas para FPGA e ASIC para acelerar os algoritmos Smith- Waterman e distância Levenshtein mantendo os mesmos resultados obtidos por softwares. Descrevemos uma nova e eficiente unidade de processamento para o cálculo do Smith- Waterman utilizando affine gap. Também projetamos uma arquitetura que permite particionar as sequências de entrada para a distância Levenshtein em um array sistólico de tamanho fixo. Nossa implementação em FPGA para o Smith-Waterman acelera de 275 a 494 vezes o algoritmo em relação a um computador com processador de propósito geral. Ainda é 52 a 113% mais rápida em relação, segundo nosso conhecimento, as mais rápidas arquiteturas recentemente publicadas. / Bioinformatics databases used for sequence comparison and local sequence alignment are growing exponentially. This has popularized programs that carry out database searches. Current implementations of sequence alignment methods based on Smith- Waterman and Levenshtein distance have proven to be computationally intensive and, hence, amenable for hardware acceleration. This Msc. Thesis describes an FPGA and ASIC based hardware implementation designed to accelerate the Smith-Waterman and Levenshtein distance maintaining the same results yielded by general softwares. We describe an new efficient Smith-Waterman affine gap process element and a new architecture to partitioning and maping the Levenshtein distance into fixed size systolic arrays. Our FPGA Smith-Waterman implementation delivers 275 to 494-fold speed-up over a standard desktop computer and is also about 52 to 113% faster, to the best of our knowledge, than the fastest implementation in a most recent family of accelerators. Microeletrônica Aplicação dos computadores DNA sequence scanning Smith-Waterman Edit distanve Levenshtein distance Dynamic programming Systolic array FPGA ASIC VLSI Protein sequences Query sequence Subject sequence
14	Arquiteturas em hardware para o alinhamento local de sequências biológicas / Hardware architectures for local biological sequence alignment Mallmann, Rafael Mendes January 2010 (has links) Bancos de dados biológicos utilizados para comparação e alinhamento local de sequências tem crescido de forma exponencial. Isso popularizou programas que realizam buscas nesses bancos. As implementações dos algoritmos de alinhamento de sequências Smith- Waterman e distância Levenshtein demonstraram ser computacionalmente intensivas e, portanto, propícias para aceleração em hardware. Este trabalho descreve arquiteturas em hardware dedicado prototipadas para FPGA e ASIC para acelerar os algoritmos Smith- Waterman e distância Levenshtein mantendo os mesmos resultados obtidos por softwares. Descrevemos uma nova e eficiente unidade de processamento para o cálculo do Smith- Waterman utilizando affine gap. Também projetamos uma arquitetura que permite particionar as sequências de entrada para a distância Levenshtein em um array sistólico de tamanho fixo. Nossa implementação em FPGA para o Smith-Waterman acelera de 275 a 494 vezes o algoritmo em relação a um computador com processador de propósito geral. Ainda é 52 a 113% mais rápida em relação, segundo nosso conhecimento, as mais rápidas arquiteturas recentemente publicadas. / Bioinformatics databases used for sequence comparison and local sequence alignment are growing exponentially. This has popularized programs that carry out database searches. Current implementations of sequence alignment methods based on Smith- Waterman and Levenshtein distance have proven to be computationally intensive and, hence, amenable for hardware acceleration. This Msc. Thesis describes an FPGA and ASIC based hardware implementation designed to accelerate the Smith-Waterman and Levenshtein distance maintaining the same results yielded by general softwares. We describe an new efficient Smith-Waterman affine gap process element and a new architecture to partitioning and maping the Levenshtein distance into fixed size systolic arrays. Our FPGA Smith-Waterman implementation delivers 275 to 494-fold speed-up over a standard desktop computer and is also about 52 to 113% faster, to the best of our knowledge, than the fastest implementation in a most recent family of accelerators. Microeletrônica Aplicação dos computadores DNA sequence scanning Smith-Waterman Edit distanve Levenshtein distance Dynamic programming Systolic array FPGA ASIC VLSI Protein sequences Query sequence Subject sequence
15	Analyse verschiedener Distanzmetriken zur Messung des Anonymisierungsgrades theta Eisoldt, Martin, Neise, Carsten, Müller, Andreas 23 August 2019 (has links) Das bereits existierende Konzept zur Bewertung der Anonymisierung von Testdaten wird in dieser Arbeit weiter untersucht. Dabei zeigen sich die Vor- und Nachteile gegenüber bereits existierenden Distanzmetriken. Weiterführend wird untersucht, welchen Einfluss Parameteränderungen auf die Ergebnisse haben. info:eu-repo/classification/ddc/000 ddc:000 Anonymisierung ; Testdaten
16	Služba pro ověření spolehlivosti a pečlivosti českých advokátů / A Service for Verification of Czech Attorneys Jílek, Radim January 2017 (has links) This thesis deals with the design and implementation of the Internet service, which allows to objectively assess and verify the reliability and diligence of Czech lawyers based on publicly available data of several courts. The aim of the thesis is to create and put into operation this service. The result of the work are the programs that provide partial actions in the realization of this intention.
17	Investigating the Portuguese-English Bilingual Mental Lexicon: Crosslinguistic Orthographic and Phonological Overlap in Cognates and False Friends Alves-Soares, Leonardo 01 October 2020 (has links) This dissertation investigates how cognates are organized in the bilingual mental lexicon and examines whether orthography in one language, via phonological representations, influences the processing of cognates and false friends in the other language. In light of the framework of two well-known models of bilingual visual word recognition, the Bilingual Interactive Activation (BIA) and the Bilingual Interactive Activation Plus (BIA+), the premise is that there is activation from orthography to phonology across a bilingual’s two languages and that this activation is modulated by the degree of orthographic and phonological code overlap. Two objective metrics were used to assess crosslinguistic similarity of Portuguese-English cognates and false friends that were selected for a cross-language lexical decision task with masked priming. Dynamic time warping (DTW), an algorithm that was originally conceived to compare different speech patterns in automatic speech recognition and to measure acoustic similarity between two time-dependent sequences, was used to compute crosslinguistic phonological similarity. The Normalized Levenshtein Distance (NLD), an algorithm that calculates the minimum number of single-character insertions, deletions or substitutions required to change one word into another and normalizes the result by their lengths, was used to compute crosslinguistic orthographic similarity. Portuguese-English bilinguals who acquired their second language after reaching puberty, and English functional monolinguals who grew up speaking primarily English were recruited to participate in the experimental task. Based on collected reaction time and accuracy data, mixed-effects models analyses are used to estimate the individual effects of crosslinguistic orthographic, phonological and semantic similarity and the role each of them, along with English proficiency, word frequency and length play in the organization of the Portuguese-English bilingual mental lexicon. bilingual mental lexicon Portuguese English Portuguese-English bilinguals English functional monolinguals cognates false friends crosslinguistic overlap crosslinguistic similarity semantic lexical decision task LDT masked priming spreading activation RHM BIA BIA+ Multilink orthographic representations phonological representations dynamic time warping DTW Normalized Levenshtein Distance NLD mixed-effects models lmer glmer reaction time accuracy
18	Automatické testování projektu JavaScript Restrictor / Automatic Testing of JavaScript Restrictor Project Bednář, Martin January 2020 (has links) The aim of the thesis was to design, implement and evaluate the results of automatic tests for the JavaScript Restrictor project, which is being developed as a web browser extension. The tests are divided into three levels - unit, integration, and system. The Unit Tests verify the behavior of individual features, the Integration Tests verify the correct wrapping of browser API endpoints, and the System Tests check that the extension does not suppress the desired functionality of web pages. The System Tests are implemented for parallel execution in a distributed environment which has succeeded in achieving an almost directly proportional reduction in time with respect to the number of the tested nodes. The benefit of this work is detection of previously unknown errors in the JavaScript Restrictor extension and provision of the necessary information that allowed to fix some of the detected bugs.
19	The Perception of Lexical Similarities Between L2 English and L3 Swedish Utgof, Darja January 2008 (has links) <p>The present study investigates lexical similarity perceptions by students of Swedish as a foreign language (L3) with a good yet non-native proficiency in English (L2). The general theoretical framework is provided by studies in transfer of learning and its specific instance, transfer in language acquisition.</p><p>It is accepted as true that all previous linguistic knowledge is facilitative in developing proficiency in a new language. However, a frequently reported phenomenon is that students see similarities between two systems in a different way than linguists and theoreticians of education do. As a consequence, the full facilitative potential of transfer remains unused.</p><p>The present research seeks to shed light on the similarity perceptions with the focus on the comprehension of a written text. In order to elucidate students’ views, a form involving similarity judgements and multiple choice questions for formally similar items has been designed, drawing on real language use as provided by corpora. 123 forms have been distributed in 6 groups of international students, 4 of them studying Swedish at Level I and 2 studying at Level II. </p><p>The test items in the form vary in the degree of formal, semantic and functional similarity from very close cognates, to similar words belonging to different word classes, to items exhibiting category membership and/or being in subordinate/superordinate relation to each other, to deceptive cognates. The author proposes expected similarity ratings and compares them to the results obtained. The objective measure of formal similarity is provided by a string matching algorithm, Levenshtein distance.</p><p>The similarity judgements point at the fact that intermediate similarity values can be considered problematic. Similarity ratings between somewhat similar items are usually lower than could be expected. Besides, difference in grammatical meaning lowers similarity values significantly even if lexical meaning nearly coincides. Thus, the obtained results indicate that in order to utilize similarities to facilitate language learning, more attention should be paid to underlying similarities.</p> master master's programme language culture general linguistics linguistics foreign language acquisition similarity formal similarity semantic similarity functional similarity transfer transfer of learning language acquisition form form-based research crosslinguistic infuence one-year master english swedish lexical similarities false friends cognates deceptive cognates origin words of the same origin proto-germanic proto-indo-european competence performance comprehension corpus corpus-based data corpus-based research levenshtein distance objective similarity perceived similarity frequency prototype prototypicality proficiency context informed guess simchecker word recognition tachitoscopic experiments semantic correspondence similarity judgements eurocom surface transfer deep transfer lateral transfer English language Engelska språket Linguistic subjects Lingvistikämnen
20	The Perception of Lexical Similarities Between L2 English and L3 Swedish Utgof, Darja January 2008 (has links) The present study investigates lexical similarity perceptions by students of Swedish as a foreign language (L3) with a good yet non-native proficiency in English (L2). The general theoretical framework is provided by studies in transfer of learning and its specific instance, transfer in language acquisition. It is accepted as true that all previous linguistic knowledge is facilitative in developing proficiency in a new language. However, a frequently reported phenomenon is that students see similarities between two systems in a different way than linguists and theoreticians of education do. As a consequence, the full facilitative potential of transfer remains unused. The present research seeks to shed light on the similarity perceptions with the focus on the comprehension of a written text. In order to elucidate students’ views, a form involving similarity judgements and multiple choice questions for formally similar items has been designed, drawing on real language use as provided by corpora. 123 forms have been distributed in 6 groups of international students, 4 of them studying Swedish at Level I and 2 studying at Level II. The test items in the form vary in the degree of formal, semantic and functional similarity from very close cognates, to similar words belonging to different word classes, to items exhibiting category membership and/or being in subordinate/superordinate relation to each other, to deceptive cognates. The author proposes expected similarity ratings and compares them to the results obtained. The objective measure of formal similarity is provided by a string matching algorithm, Levenshtein distance. The similarity judgements point at the fact that intermediate similarity values can be considered problematic. Similarity ratings between somewhat similar items are usually lower than could be expected. Besides, difference in grammatical meaning lowers similarity values significantly even if lexical meaning nearly coincides. Thus, the obtained results indicate that in order to utilize similarities to facilitate language learning, more attention should be paid to underlying similarities. master master's programme language culture general linguistics linguistics foreign language acquisition similarity formal similarity semantic similarity functional similarity transfer transfer of learning language acquisition form form-based research crosslinguistic infuence one-year master english swedish lexical similarities false friends cognates deceptive cognates origin words of the same origin proto-germanic proto-indo-european competence performance comprehension corpus corpus-based data corpus-based research levenshtein distance objective similarity perceived similarity frequency prototype prototypicality proficiency context informed guess simchecker word recognition tachitoscopic experiments semantic correspondence similarity judgements eurocom surface transfer deep transfer lateral transfer Specific Languages Studier av enskilda språk General Language Studies and Linguistics

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