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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
11

THE ROLE OF HABITAT STRUCTURE AND COMPETITION IN THE ECOLOGY OF LISTERIA SPECIES IN FOOD-RELATED AND OTHER ENVIRONMENTS

Sally Chiu Unknown Date (has links)
Listeria monocytogenes is a foodborne pathogen with a high mortality rate in susceptible populations and is of great public health concern with regard to food safety. The ability to grow at refrigeration temperatures during storage and at low pH levels during food processing has enabled the species to establish and sustain growth on processed food. Some food products particularly at risk of contamination by L. monocytogenes are deli or processed meat products, seafood, processed vegetables, dairy products and other food that do not require heating or reheating before consumption. The aims of this study are therefore to investigate firstly the prevalence rates of the species in high risk food products and a food processing plant in Brisbane. Secondly, to determine whether food isolates are better than environmental isolates at surviving the stress factors in food processing environments, or if their lineage groupings are a better indicator of their survival. Thirdly, to compare the survival of food and environmental isolates under temperature stress in co-cultures. A survey of more than 100 high-risk food products at supermarkets was carried out to investigate the prevalence of L. monocytogenes and other Listeria species in food. Isolates were also obtained from a food processing plant during routine tests. This study has found a low prevalence rate (under 10%) of L. monocytogenes in the processed vegetables and meat products tested. Other products tested included processed and raw seafood and processed fresh fruit. More L. monocytogenes isolates were isolated from the food processing plant (101) than from the food survey (25). Listeria grayi (73 isolates), a non-pathogenic species, was more frequently isolated from the food survey. The characterisation of those isolates has revealed their lineage groupings and REP-PCR profiles, which did not appear to be related to their sources. A selected group of 25 isolates were also serotyped for further identification. A larger number of lineage II isolates (70) were found compared to lineage I isolates (25), and were more common in food than the environments; while some (7) produced inconclusive results in the lineage PCR. The REP-PCR did not separate isolates of different sources, lineages or serotypes. In order to investigate the survival fitness of L. monocytogenes isolates whilst under environmental stress relevant to food safety, ten isolates from the food survey and food processing plant were chosen. Five isolates each from lineages I and II were subjected to temperatures ranging from 4ºC to 30ºC and pH levels from 4.0 to 6.0 for two weeks continuously, with their growth monitored by either optical density or plate counts. It was found that the isolates were most susceptible at the combination of pH 4.0 and 4ºC, where the growth of the isolates was completely inhibited. Again no relationship was observed between the lineage or the sources and the survival fitness of the chosen isolates. Due to the frequency of L. monocytogenes being co-isolated with other Listeria species as well as other food-borne pathogens, the relative competitive fitness of four of the isolates from the survival fitness experiment were compared in co-cultures at 4ºC and 30ºC at pH 7.4 in a small-scale preliminary study. The four isolates from food and environments were grown in broth cultures in pairs with the plate counts performed on antibiotic-supplemented selective TSA agar. The isolates were distinguished on agar supplemented with tetracycline which the isolates had acquired resistance to for this purpose. No significant difference (P>0.05) was observed between the lineages or the sources and the competitive fitness of the isolates in this study. The isolates always produced slightly more colonies in the antibioticresistant form compared to the wildtype form but did not seem to relate to the competitive fitness of the isolates. It would seemed that within the scope of this study, neither the lineage, serotype nor source of the isolates indicated any isolate with a better ability of survival while at low temperatures and low pH levels in pure and mixed cultures. However, other classifying groups such as serotypes, RAPD profiles may reveal possible co-relations, as well as a wider isolate pool. Furthermore, different stress factors could be included as part of an investigation on the survival of L. monocytogenes, as this study focused on food safety during processing.
12

Identification and characterization of low pH-triggered conformational changes in the herpes simplex virus glycoprotein B

Dollery, Stephen 02 March 2011 (has links)
Herpesviruses can enter host cells by pH-dependent endocytic pathways in a cell-specific manner. The role of pH in herpesvirus endocytosis is unclear. Herpes simplex virus (HSV) is a paradigm for virus membrane fusion via a complex of glycoproteins. HSV glycoproteins B, D and the heterodimer H-L are necessary and sufficient for membrane fusion. This work analyzes the structure and function of HSV glycoproteins B, D, and H-L at neutral pH, and at the physiological low-pH encountered during endocytic entry. It is demonstrated that mildly acidic low pH triggers specific conformational changes in HSV gB at a pH of 5.7 to 6.0. The antigenic structure of gB functional region I that is critical for fusion is specifically altered by mildly acidic pH both in vitro and during entry into host cells. Point mutations within gB functional region 1 that block membrane fusion still allow conformational changes in region 1. This suggests that specific hydrophobic residues are essential for fusion domain insertion into the host cell membrane but not conformational change. The detected conformational changes were reversible, similar to other class III fusion glycoproteins. Exposure to mildly acidic pH directly triggered the fusion function of HSV glycoproteins and caused gB, but not other glycoproteins, to become more hydrophobic. The oligomeric conformation of gB is altered at a similar pH range. In addition, several approaches were used to monitor gB throughout glycoprotein synthesis and maturation. It is shown that gB may cotranslationally fold and oligomerize as it is synthesized on the ribosome. As gB matures it then alters conformation and/or binding partner to form antigenically distinct populations of gB within the cell and virion. I conclude that intracellular low pH induces changes in gB conformation that, together with additional triggers such as receptor-binding, are essential for virion-cell fusion during herpesviral entry by endocytosis.
13

Respostas à acidez em células de tabaco (Nicotiana tabacum) cv. BY-2 em diferentes estados de sensibilidade / The response of tobacco (Nicotina tabacum) cv. BY-2 cells to low pH at different stages of sensitivity

Stefanuto, Vanderlei Antonio 26 September 2006 (has links)
Os solos ácidos recobrem, cerca de 40% da área terrestre, constituindo-se em um dos principais fatores limitantes à população à produção vegetal do planeta. No Brasil, os solos ácidos abrangem cerca de dois terços do território nacional. De um modo geral, a acidez do subsolo reduz a profundidade do sistema radicular, aumentando a susceptibilidade à seca e diminuindo o uso de nutrientes pelas plantas. Além da alta atividade de íon hidrogênio (H+), os solos ácidos geralmente apresentam níveis tóxicos de alumínio, sendo que a toxicidade por AI tem sido intensivamente investigada nos últimos anos. No entanto, a toxicidade por AI ocorre apenas a pH baixo e em condições onde a toxicidade por prótons geralmente também se manifesta. Apesar disto, trabalhos envolvendo a toxicidade por prótons são escassos. A sensibilidade de células a pH baixo depende da fase de crescimento e desenvolvimento em que estas se encontram. Em raízes, as células mais sensíveis são as da região de alongamento e em suspensões celulares as células na fase log de crescimento são mais sensíveis do que as células na fase estacionária. Este trabalho faz parte de uma linha de pesquisa que procura explorar as diferenças que existem entre células quanto à sensibilidade a pH baixo para melhor entender a toxicidade e tolerância a prótons. Foram utilizadas células da cultura de tabaco cv. BY-2, um sistema modelo que apresenta diversas vantagens sobre o uso de raízes para a realização deste trabalho. Os objetivos deste estudo foram de a) determinar condições apropriadas para a exposição destas células a acidez; b) caracterizar a resposta destas células a pH baixo, sob influência de diferentes fatores ambientais, quando se encontram em estados distintos de sensibilidade ao pH baixo; e c) verificar se mudanças na sensibilidade das células a pH baixo podem ser decorrentes de alterações na composição da membrana plasmática ou na atividade das ATPases. Vários testes iniciais foram realizados com o intuito de se definir algumas condições experimentais - o tempo de exposição, a composição do meio e o tampão a ser empregado. Optou-se por lavar as células e depois incubá-las por 1h em meio simples com pH desejado e contendo apenas Ca \'Cl IND. 2\' 2mM, KCl 10mM. E o tampão MES ou biftalato (10 mM). O biftalato foi testado porque o tampão MES, usado normalmente no meio de cultura completo, não é eficiente na faixa de pH abaixo de 5,0. O biftalato (pKa = 4,1) praticamente não afetou a viabilidade celular avaliada pela permeabilidade a trypan blue, mas inibiu o crescimento celular no meio de cultura completo. Mesmo assim, os dois tampões foram utilizados em paralelo em diversos experimentos e verificou-se que os resultados foram semelhantes. A viabilidade das células na fase log (2 dias) foi reduzida quando se abaixou o pH de 5,6 a 3,8, sendo que caiu mais acentuadamente até o pH de 4,8. As células da fase estacionaria (7d) foram insensíveis ao baixo pH. A um pH fixo de 4,2 aumentando-se a concentração de Ca \'Cl IND. 2\' para cerca de 8 a 16 mM praticamente aboliu o efeito deletério do pH baixo. Para se ter o mesmo efeito com a adição de KCl, foi necessário adicionar entre 80 e 160 mM. A adição de sacarose também amenizou os efeitos do pH\'sendo praticamente revertido a uma concentração de 100 Mm. Os resultados indicam a importância da força iônica e da osmolaridade da solução, mas o efeito de Ca não parece depender apenas destas duas propriedades. A inibição de ATPases, pelo uso de DCCD, não pareceu ter qualquer relação com a sensibilidade a pH baixo. Tanto células de tabaco na fase log quanto estacionárias foram sensíveis à aplicação de ortovanadato de sódio. Em células da fase estacionária, este efeito mais acentuado a pH 4,2, sugerindo que nestas células, as H+ ATPases do tipo P da membrana plasmática podem ter algum papel na tolerância destas células ao baixo pH. Encontrou-se diferenças no perfil protéico de frações enriquecidas em membrana plasmática entre células da fase log e estacionárias e entre células tratadas ou não a pH baixo. Estas diferenças precisam ser melhor estudadas. / Acid soils account for about 40 % of the surface area of the world and are one of the major factors limiting plant productivity. In Brazil, these soils comprise roughly two-thirds of its total territory. In general, soil acidity is detrimental because it limits the depth of the root system, increasing susceptibility to drought and decreasing the use of nutrients. In addition to the high levels of hydrogen ion activity, acid soils usually have Al toxicity hazards, a topic which has been intensely studied in the past years. However, Al toxicity only occurs at low pH, under conditions in which proton toxicity is also a problem. Despite this, studies of proton toxicity are lacking. The sensitivity of cells to low pH depends on their growth and developmental status. In roots, the most sensitive cells are those of the elongation zone and in cell cultures, cells in the log phase are more sensitive than those of the stationary phase. This study is part of a larger attempt to explore the differences that exist between cells with respect to their sensitivity to low pH to further understand toxicity and tolerance to protons. Cells of tobacco BY-2, a plant cell model system which has several advantages over the use of roots, was used in this study. The objectives were a) to determine the appropriate conditions to expose these cells to low pH; b) characterize the response of these cells to low pH, when different environmental factors are varied and at different stages of cellular sensitivity to acidity; and c) examine if changes in the sensitivity of cells to low pH are due to changes in the composition of plasma membranes or in the activity of ATPases. Several preliminary tests were performed to define the experimental conditions to be used ? the duration of exposure to low pH, the composition of the medium and the buffer to be used. A simple solution containing only CaCl2 2mM, KCl 10 mM and MES or phthalate buffer (10 mM) was chosen to wash and incubate the cells at the pH of interest. Phthalate was tested because MES, the buffer normally used in the culture medium, is not effective at pH values below 5.0. Phthalate (pKa = 4,1) had very little effects on cell viability as evaluated by membrane permeability to trypan blue, but it severely inhibited the growth of the cell culture in complete medium. Nevertheless, both buffers were used in several subsequent experiments, the results of which were found to be similar between both buffers. The viability of log-phase cells (2 day-old) was reduced when the pH was lowered from pH 5,6 to 3.8, but this was sharper down to pH 4,8. Cells in stationary phase (7 day-old) were insensitive to low pH. At a fixed pH of 4,2, increases in the concentration of CaCl2 up to 8 or 16 mM abolished most of the deleterious effects of low pH. To generate the same effect, KCl had to be added at concentrations between 80 and 160 mM. The addition of sucrose also alleviated the effects of low pH. The results suggest the importance of solution ionic strength and osmolarity on sensitivity to low pH, but the effects of Ca do not appear to depend only on these two properties. The inhibition of ATPases, by DCCD, did not appear to bear any relation to cellular sensitivity to low pH. Both log-phase and stationary-phase cells were affected by the addition of sodium orthophosphate. In stationary-phase cells, this effect was more pronounced at pH 4,2, suggesting that in these cells, P-type H+-ATPases of the plasma membrane may play a role in the tolerance of these cells to lo pH. Differences were found in the protein profile of enriched plasma membrane fractions both between log-phase and stationary-phase cells and between cells treated or not with low pH. These differences, however, need to be better examined.
14

Amoebae as Hosts and Vectors for Spread of Campylobacter jejuni

Olofsson, Jenny January 2015 (has links)
Campylobacter jejuni is the leading bacterial cause of gastrointestinal diarrheal disease in humans worldwide. This zoonotic pathogen has a complex epidemiology due to its presence in many different host organisms. The overall aim of this thesis was to explore the role of amoebae of the genus Acanthamoeba as an intermediate host and vector for survival and dissemination of C. jejuni. Earlier studies have shown that C. jejuni can enter, survive and replicate within Acanthamoebae spp. In this thesis, I have shown that C. jejuni actively invades Acanthamoeba polyphaga. Once inside, C. jejuni could survive within the amoebae by avoiding localization to degradative lysosomes. We also found that A. polyphaga could protect C. jejuni in acid environments with pH levels far below the range in which the bacterium normally survives. Furthermore, low pH triggered C. jejuni motility and invasion of A. polyphaga. In an applied study I found that A. polyphaga also could increase the survival of C. jejuni in milk and juice both at room temperature and at +4ºC, but not during heating to recommended pasteurization temperatures. In the last study we found that forty environmental C. jejuni isolates with low bacterial concentrations could be successfully enriched using the Acanthamoeba-Campylobacter coculture (ACC) method. Molecular genetic analysis using multilocus sequence typing (MLST) and sequencing of the flaA gene, showed no genetic changes during coculture. The results of this thesis have increased our knowledge on the mechanisms behind C. jejuni invasion and intracellular survival in amoebae of the genus Acanthamoeba. By protecting C. jejuni from acid environments, Acanthamoebae could serve as important reservoirs for C. jejuni e.g. during acid sanitation of chicken stables and possibly as vectors during passage through the stomach of host animals. Furthermore, Acanthamoeba spp. could serve as a vehicle and reservoir introducing and protecting C. jejuni in beverages such as milk and juice. Validation of the ACC method suggests that it is robust and could be used even in outbreak investigations where genetic fingerprints are compared between isolates. In conclusion, Acanthamoeba spp. are good candidates for being natural hosts and vectors of C. jejuni.
15

Les bétons bas pH : comportements initial et différé sous contraintes externes / Low pH concretes : instantaneous and delayed behaviors under external stress

Leung Pah Hang, Thierry 22 May 2015 (has links)
Dans le cadre du stockage des déchets radioactifs en couches géologiques profondes (argilite du Callovo-Oxfordien), des bétons à faible alcalinité et à faible chaleur d'hydratation référencés "bas pH " ont été élaborés. L'utilisation de ces types de béton permet de limiter la dégradation des propriétés confinantes du matériau argileux type bentonite. Deux bétons bas pH à base de liants ternaires ont étudiés : un composé de ciment, fumée de silice et cendres volantes (TCV) et l'autre composé de ciment, fumée de silice et laitier moulu de haut fourneau (TL). L'objectif de l'étude est d'analyser le comportement de ces matériaux pour s'assurer : d'une mise en œuvre correcte à l'échelle industrielle, d'une bonne tenue chimique et mécanique dans le temps et d'un confinement performant. Le programme expérimental comprend la caractérisation physico-chimique et mécanique de ces matériaux à forte teneur en additions et est couplé à de la modélisation dans le but, in fine, de disposer d'outils permettant de prédire leur comportement au sein de l'ouvrage. Les résultats montrent qu'un cobroyage des constituants du liant permet d'améliorer la réactivité du liant et de s'assurer d'une bonne robustesse des formules de béton. La condition essentielle de l'obtention d'un pH de leur solution interstitielle de 11 est assurée dès 28 jours. Les bétons peuvent être considérés à faible chaleur d'hydratation du fait des échauffements rencontrés à court terme. A long terme, de hautes performances mécaniques, de faibles coefficients de perméabilité et de diffusion sont obtenus sur ces matériaux. Les modélisations de l'hydratation, de l'évolution de propriétés mécaniques, de l'endommagement, des déformations différées et des transferts hydriques ont été abordées. Le modèle d'hydratation utilisé a été adapté aux liants ternaires en prenant en compte les phénomènes de nucléation des additions sur l'hydratation du ciment. Pour les autres modèles, l'acquisition des mesures expérimentales a permis de fournir les données d'entrée pour leur utilisation et de vérifier leur validité sur des liants fortement dilués. Tous ces travaux permettent au final d'envisager sereinement la modélisation et la prédiction du comportement des structures réalisées en béton bas pH. / In the context of the radioactive wastes disposal in deep geological repository of clay, low-alkalinity and low heat of hydration concretes referenced "low pH " were designed. The degradation of the properties of the clay can be limited by using these types of concrete. Two types of low pH binder were chosen for this research: the first one is comprised of cement, silica fume and fly ash (TCV) and the other one is comprised of cement, silica fume and slag (TL). The objective of this research is to comprehend the behavior of these concrete in order to ensure the well-placing of the fresh concrete at an industrial scale and good mechanical performances, chemical stability and confining properties. The experimental program focuses on a physico-chemical and mechanical characterization of these recent materials with high pozzolanic addition content. The experimental data are then modeled for the purpose of having a tool that, in the end, is able to predict the behavior of the low pH concretes within the structure. The results show that grinding altogether the three constituents improves the reactivity of the binder and allows a good reproducibility of the low pH design. The most important criterion which is a pH of the interstitial solution below 11 is met at 28 days. The heat measurements at early age show that the low pH concretes are low heat of hydration concretes as well. In the long run, high mechanical performances, low permeabilities and diffusivities were obtained on these materials. The modeling of the hydration, evolution of mechanical properties, damage, creep and hydric transfers is also covered in this thesis. The model of hydration was adjusted to match the hydration of ternary binders by taking into account the effects of the additions such as the heterogeneous nucleation, on the hydration of the cement. As for the other models, the experimental results were used as data input to validate the models on binders with high replacement rates. Ultimately, this work allows us to contemplate serenely the modeling and the prediction of the behavior of structure made of low pH concretes.
16

Respostas à acidez em células de tabaco (Nicotiana tabacum) cv. BY-2 em diferentes estados de sensibilidade / The response of tobacco (Nicotina tabacum) cv. BY-2 cells to low pH at different stages of sensitivity

Vanderlei Antonio Stefanuto 26 September 2006 (has links)
Os solos ácidos recobrem, cerca de 40% da área terrestre, constituindo-se em um dos principais fatores limitantes à população à produção vegetal do planeta. No Brasil, os solos ácidos abrangem cerca de dois terços do território nacional. De um modo geral, a acidez do subsolo reduz a profundidade do sistema radicular, aumentando a susceptibilidade à seca e diminuindo o uso de nutrientes pelas plantas. Além da alta atividade de íon hidrogênio (H+), os solos ácidos geralmente apresentam níveis tóxicos de alumínio, sendo que a toxicidade por AI tem sido intensivamente investigada nos últimos anos. No entanto, a toxicidade por AI ocorre apenas a pH baixo e em condições onde a toxicidade por prótons geralmente também se manifesta. Apesar disto, trabalhos envolvendo a toxicidade por prótons são escassos. A sensibilidade de células a pH baixo depende da fase de crescimento e desenvolvimento em que estas se encontram. Em raízes, as células mais sensíveis são as da região de alongamento e em suspensões celulares as células na fase log de crescimento são mais sensíveis do que as células na fase estacionária. Este trabalho faz parte de uma linha de pesquisa que procura explorar as diferenças que existem entre células quanto à sensibilidade a pH baixo para melhor entender a toxicidade e tolerância a prótons. Foram utilizadas células da cultura de tabaco cv. BY-2, um sistema modelo que apresenta diversas vantagens sobre o uso de raízes para a realização deste trabalho. Os objetivos deste estudo foram de a) determinar condições apropriadas para a exposição destas células a acidez; b) caracterizar a resposta destas células a pH baixo, sob influência de diferentes fatores ambientais, quando se encontram em estados distintos de sensibilidade ao pH baixo; e c) verificar se mudanças na sensibilidade das células a pH baixo podem ser decorrentes de alterações na composição da membrana plasmática ou na atividade das ATPases. Vários testes iniciais foram realizados com o intuito de se definir algumas condições experimentais - o tempo de exposição, a composição do meio e o tampão a ser empregado. Optou-se por lavar as células e depois incubá-las por 1h em meio simples com pH desejado e contendo apenas Ca \'Cl IND. 2\' 2mM, KCl 10mM. E o tampão MES ou biftalato (10 mM). O biftalato foi testado porque o tampão MES, usado normalmente no meio de cultura completo, não é eficiente na faixa de pH abaixo de 5,0. O biftalato (pKa = 4,1) praticamente não afetou a viabilidade celular avaliada pela permeabilidade a trypan blue, mas inibiu o crescimento celular no meio de cultura completo. Mesmo assim, os dois tampões foram utilizados em paralelo em diversos experimentos e verificou-se que os resultados foram semelhantes. A viabilidade das células na fase log (2 dias) foi reduzida quando se abaixou o pH de 5,6 a 3,8, sendo que caiu mais acentuadamente até o pH de 4,8. As células da fase estacionaria (7d) foram insensíveis ao baixo pH. A um pH fixo de 4,2 aumentando-se a concentração de Ca \'Cl IND. 2\' para cerca de 8 a 16 mM praticamente aboliu o efeito deletério do pH baixo. Para se ter o mesmo efeito com a adição de KCl, foi necessário adicionar entre 80 e 160 mM. A adição de sacarose também amenizou os efeitos do pH\'sendo praticamente revertido a uma concentração de 100 Mm. Os resultados indicam a importância da força iônica e da osmolaridade da solução, mas o efeito de Ca não parece depender apenas destas duas propriedades. A inibição de ATPases, pelo uso de DCCD, não pareceu ter qualquer relação com a sensibilidade a pH baixo. Tanto células de tabaco na fase log quanto estacionárias foram sensíveis à aplicação de ortovanadato de sódio. Em células da fase estacionária, este efeito mais acentuado a pH 4,2, sugerindo que nestas células, as H+ ATPases do tipo P da membrana plasmática podem ter algum papel na tolerância destas células ao baixo pH. Encontrou-se diferenças no perfil protéico de frações enriquecidas em membrana plasmática entre células da fase log e estacionárias e entre células tratadas ou não a pH baixo. Estas diferenças precisam ser melhor estudadas. / Acid soils account for about 40 % of the surface area of the world and are one of the major factors limiting plant productivity. In Brazil, these soils comprise roughly two-thirds of its total territory. In general, soil acidity is detrimental because it limits the depth of the root system, increasing susceptibility to drought and decreasing the use of nutrients. In addition to the high levels of hydrogen ion activity, acid soils usually have Al toxicity hazards, a topic which has been intensely studied in the past years. However, Al toxicity only occurs at low pH, under conditions in which proton toxicity is also a problem. Despite this, studies of proton toxicity are lacking. The sensitivity of cells to low pH depends on their growth and developmental status. In roots, the most sensitive cells are those of the elongation zone and in cell cultures, cells in the log phase are more sensitive than those of the stationary phase. This study is part of a larger attempt to explore the differences that exist between cells with respect to their sensitivity to low pH to further understand toxicity and tolerance to protons. Cells of tobacco BY-2, a plant cell model system which has several advantages over the use of roots, was used in this study. The objectives were a) to determine the appropriate conditions to expose these cells to low pH; b) characterize the response of these cells to low pH, when different environmental factors are varied and at different stages of cellular sensitivity to acidity; and c) examine if changes in the sensitivity of cells to low pH are due to changes in the composition of plasma membranes or in the activity of ATPases. Several preliminary tests were performed to define the experimental conditions to be used ? the duration of exposure to low pH, the composition of the medium and the buffer to be used. A simple solution containing only CaCl2 2mM, KCl 10 mM and MES or phthalate buffer (10 mM) was chosen to wash and incubate the cells at the pH of interest. Phthalate was tested because MES, the buffer normally used in the culture medium, is not effective at pH values below 5.0. Phthalate (pKa = 4,1) had very little effects on cell viability as evaluated by membrane permeability to trypan blue, but it severely inhibited the growth of the cell culture in complete medium. Nevertheless, both buffers were used in several subsequent experiments, the results of which were found to be similar between both buffers. The viability of log-phase cells (2 day-old) was reduced when the pH was lowered from pH 5,6 to 3.8, but this was sharper down to pH 4,8. Cells in stationary phase (7 day-old) were insensitive to low pH. At a fixed pH of 4,2, increases in the concentration of CaCl2 up to 8 or 16 mM abolished most of the deleterious effects of low pH. To generate the same effect, KCl had to be added at concentrations between 80 and 160 mM. The addition of sucrose also alleviated the effects of low pH. The results suggest the importance of solution ionic strength and osmolarity on sensitivity to low pH, but the effects of Ca do not appear to depend only on these two properties. The inhibition of ATPases, by DCCD, did not appear to bear any relation to cellular sensitivity to low pH. Both log-phase and stationary-phase cells were affected by the addition of sodium orthophosphate. In stationary-phase cells, this effect was more pronounced at pH 4,2, suggesting that in these cells, P-type H+-ATPases of the plasma membrane may play a role in the tolerance of these cells to lo pH. Differences were found in the protein profile of enriched plasma membrane fractions both between log-phase and stationary-phase cells and between cells treated or not with low pH. These differences, however, need to be better examined.
17

Functional Analysis of the MAP kinase Mps1 pathway and its downstream targets in the rice blast fungus Magnaporthe oryzae / Analyse fonctionnelle de la voie MAP kinase Mps1 et ses cibles chez le champignon Magnaporthe oryzae

Grund, Elisabeth 02 June 2015 (has links)
Nous avons étudié la voie MAPK Mps1/Slt2 du champignon pathogène du riz Magnaporthe Oryzae. Chez la levure, Slt2 active les facteurs de transcription Rlm1, Swi4 et Swi6. Nous avons identifié le gène orthologue de ScSWI4 chez M. oryzae et étudié les rôles de Mps1, Rlm1, Swi4 et Swi6 en comparant les phénotypes de leurs mutants nuls. Δmps1, Δswi4, Δswi6 ont le même défaut de mélanisation, tandis que Δmps1 et Δrlm1 sont déficients pour la sporulation. L'absence d'hyphes aériens et d'hydrophobicité du mycélium sont des phénotypes spécifiques de Δmps1, tandis qu'une réduction de croissance est associée spécifiquement à Δswi4 et Δswi6. Aucun de ces mutants ne présente une hypersensibilité aux enzymes de dégradation de la paroi (EDPs) et aux inhibiteurs de la paroi (aculeacine A, nikkomycin Z, calcofluor white : CFW). La pathogénie de Δswi4 est réduite, tandis que celle de Δswi6 est similaire à la souche sauvage. Δmps1 et Δrlm1 sont non pathogènes. La transcriptomique comparative de la souche sauvage, Δmps1, Δrlm1 et Δswi4 montre qu'il n'existe qu'un petit nombre de gènes sur- ou sous- exprimés chez ces mutants, le nombre maximal étant observée entre Δmps1 et Δswi4. Le gène AGS1 encodant l'alpha-1, 3-glucane synthase, une cible supposée de Mps1, n'est ni sur- ni sous-exprimé chez ces mutants. La souche sauvage et Δmps1 ont la même sensibilité aux EDPs et au CFW à pH6. Cependant, à pH5, la souche sauvage devient résistante aux EDPs et au CFW à pH6. Cependant, à pH5, la souche sauvage devient résistante aux EDPs et au CFW, tandis que Δmps1 perd cette résistance, suggérant qu'elle nécessite Mps1. Notre étude montre que la voie MAPK Mps1 joue un rôle important dans plusieurs processus biologiques de M. oryzae et précise quels sont les cibles / We have studied the Mps1/Slt2 MAPK signalling pathway in the rice blast fungus Magnaporthe oryzae. In yeast, Slt2 activates the transcription factors Rlm1, Swi4 and Swi6. We have identified the M. oryzae gene orthologous to ScSWI4 and studied the roles of Mps1, Rlm1, Swi4 and Swi6 in M. oryzae by comparing the phenotypes of their null mutants. Δmps1, Δswi4, Δswi6 displayed the same defects in melanisation, while Δmps1 and Δrlm1 are defective in sporulation. Loss of aerial hyphae formation and mycelium hydrophobicity are phenotypes specific of Δmps1, while reduced growth is a specific phenotype of Δswi4 and Δswi6. None of these mutants displayed an increased sensitivity against cell wall degrading enzymes (CWDEs) and cell wall inhibitors (aculeacine A, nikkomycin Z, calcofluor white : CFW). Pathogenicity was reduced in Δswi4, while Δswi6 was as pathogenic as WT. Δmps1 and Δrlm1 were non-pathogenic. Comparative transcriptomic of WT, Δmps1, Δrlm1 and Δswi4 highlighted only a limited number of genes up- and down-regulated in these mutants, with the largest number observed between Δmps1 and Δswi4. The alpha-1,3-glucan synthase encoding gene AGS1, a suggested Mps1 target, was not up- nor down-regulated in these mutants. WT and Δmps1 have a similar sensitivity to CWDE and CFW at pH6. However, at pH5, WT displays a resistance to CWDEs and CFW, while Δmps1 loses this pH5 induced resistance, suggesting it requires the Mps1 pathway. This work shows that Mps1 MAPK pathway has an important role in different M. oryzae biological processes and provides new insights on its transcriptional targets
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Evaluation of changes in surface roughness and chemical composition of the composite and bovine enamel submitted different surface treatments / Avaliação das alterações de rugosidade superficial e composição química do compósito e esmalte dental bovino submetido a diferentes tratamentos superficiais

Marília de Morais Pinelli 29 September 2009 (has links)
Objectives: To evaluate qualitatively and quantitatively changes in the surface and chemical composition of bovine enamel and composite, using hydrogen peroxide 38% when submitted to different surface treatments. Method: It was used 120 fragments from the tooth surface of bovine incisors, and in one half was prepared and a standard cavity restored with composite. Subsequently, the specimens were submitted to thirty hundreds brushing cycles, immersion in two different drinks: orange juice (Del Valle ), Whiskey (Johnnie Walker ), and last session of bleaching with hydrogen peroxide 38%. The surface changes and mineral composition of enamel and composite was determined using a superficial roughness and by Micro-Fluorensce X-ray Dispersion Energy before and after treatments. Dada were statiscally tabulated and analyzed. Calcium and Fhosphorum relative amounts and Zirconium and Silica were measured on enamel and resin composite, respectively. Results: The results showed significant difference when compared to the control group and treatment group. Conclusion: It was concluded that all bleaching alone does not cause surface changes and loss of chemical components in both the enamel and composite resin; brushing significantly increased surface roughness of the composite and enamel, comparing the initial and final time, the Association of brushing with whitening enhances the effects of surface changes and chemical composition in both the enamel and the resin. / Objetivos: Avaliar qualitativamente e quantitativamente as alterações na superfície e composição química do esmalte dental bovino e compósito nanoparticulado, utilizando peróxido de hidrogênio 38% quando submetidos a diferentes tratamentos superficiais. Método: Foram utilizados 120 fragmentos da superfície dental de incisivos bovinos, sendo que em uma das metades foi preparado uma cavidade padronizada e restaurada com compósito. Posteriormente, os espécimes foram submetidos a trinta mil ciclos de escovação, imersão em duas diferentes bebidas: Suco de laranja (Del Valle), Uísque (Johnnie Walker) e finalmente, sessão de clareamento com peróxido de hidrogênio 38%. As alterações superficiais e a composição mineral do esmalte e compósito foram determinadas com a utilização do rugosímetro e por meio de Micro-fluorescência de raios-x por energia dispersiva antes e após os tratamentos. Os dados obtidos foram tabulados e submetidos a análise estatística. Foram avaliados os teores de Cálcio e Fósforo no esmalte e de Zircônia e Sílica no compósito. Resultados: Os resultados mostraram diferença significativa quando comparado grupo controle e grupo tratamento. Conclusão: Concluiu-se que, o clareamento dental isoladamente não causa alterações superficiais e perda de componentes químicos tanto no esmalte quanto na resina composta; a escovação aumenta significativamente a rugosidade superficial do compósito e do esmalte, comparando-se tempos iniciais e finais; a associação da escovação com clareamento potencializa os efeitos de alterações superficiais e composição química tanto no esmalte quanto na resina; o uso de bebidas com baixo pH causa alterações superficiais e na composição do esmalte e do compósito.
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The Effects of Long-Term Exposure of an Artificially Assembled Microbial Community to Uranium or Low pH

Brzoska, Ryann Michelle 27 July 2015 (has links)
No description available.
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Respostas de pêlos radiculares de tomateiro (Solanum lycopersicum L. cv Micro-Tom) submetidos a estresse por pH baixo e hipo-osmolaridade / Response of tomato (Solanum lycopersicum L. cv Micro-Tom) root hairs to low pH and hypo-osmotic stress

Sardinha, Elissena Chinaglia Zabotto 30 November 2010 (has links)
A acidez do solo é um dos principais fatores limitantes à produção vegetal. A toxicidade por alumínio, que ocorre apenas a pH baixo, tem sido extensamente investigada, enquanto o estresse causado pelo pH baixo tem recebido pouca atenção. Os estudos nesta área quase sempre presumem efeitos aditivos, e portanto independentes, da toxicidade por Al3+ e H+. Este provavelmente não é o caso, sendo que o pH baixo pode ser um fator de predisposição das células ao Al3+. As evidências indicam que o pH baixo causa desarranjos na parede de células em crescimento, gerando estresse que pode comprometer a sua funcionalidade e integridade. É provável que a susceptibilidade a este estresse deve ser dependente da pressão de turgor. Por sua vez, o metabolismo oxidativo e a geração de espécies reativas de oxigênio (ROS) na parede celular podem modular a sua extensibilidade por romper ou criar ligações dentro ou entre cadeias de polissacarídeo. Há grande interesse em se conhecer se, à semelhança do que ocorre em leveduras, as células vegetais possuem um sistema de percepção e resposta a estresse da parede. Os pêlos radiculares em crescimento são sensíveis a pH baixo e estresse hipo-osmótico e constituem um bom modelo experimental para estes estudos. Os objetivos deste trabalho foram: a) Otimizar um sistema experimental para o estudo de pêlos radiculares de tomateiro (Solanum lycopersicum L. cv Micro-Tom); b) Avaliar as respostas dos pêlos radiculares ao estresse por pH baixo e hipo-osmolaridade; c) Examinar o papel da modulação oxidativa da parede celular nestas respostas; e d) Avaliar a resposta de diferentes mutantes hormonais de Micro-Tom a estes fatores de estresse. Os principais parâmetros avaliados foram a taxa de alongamento (µm.min-1) e a freqüência de rompimento dos pêlos. Tanto o estresse por pH baixo quanto choques hipo-osmóticos resultaram em taxas de alongamento significativamente diminuídos e o rompimento de pêlos radiculares, mas os efeitos dos tratamentos hipo-osmóticos foram mais marcantes. Uma curva de resposta frente à osmolaridade da solução externa revelou que a taxa de alongamento aumentou com a diminuição da osmolaridade até alcançar um limiar em que houve redução drástica da taxa de alongamento e começou-se a observar o rompimento de pêlos. Também se observou uma interação entre hipo-osmolaridade e pH baixo. O emprego do inibidor difenileno iodônio não forneceu evidências do envolvimento de NADPH oxidases da membrana plasmática na resposta de pêlos radiculares a choque hipo-osmótico ou pH baixo. Já no caso do inibidor ácido salicilhidroxâmico, encontrou-se evidências do envolvimento de peroxidases da parede. Nos mutantes hormonais dgt (pouco sensível a auxina) e epi (super produtor de etileno), mas não em not (deficiente em ácido abscísico), os pêlos radiculares apresentaram uma melhor resposta de ajustamento a choque hipo-osmótico do que Micro-Tom, reduzindo o alongamento e o rompimento dos pêlos. Este trabalho fornece fortes evidências de que os pêlos radiculares possuem um mecanismo de percepção e resposta a estresse da parede visando à manutenção de sua integridade e que apresentam bom potencial como sistema modelo nesta linha de pesquisa / Soil acidity is a major factor limiting plant growth worldwide. Aluminum toxicity, which occurs only at low pH, has been extensively studied, whereas low pH stress has received much less attention. Studies on Al3+ and H+ toxicity make the underlying assumption that the effects of these stress factors are additive, and, therefore independent of each other. However, this is most likely not the case and low pH may be a factor which increases susceptibility to further injury by Al3+. There is evidence that low pH causes disruption in cell wall structure of growing cells, which might jeopardize cell wall functionality and integrity. It is likely that turgor pressure plays an important role in cell wall stress caused by low pH. The apoplastic metabolism of reactive oxygen species (ROS) can modulate cell wall extensibility by making or breaking bonds within and between cell wall polysaccharides. A major question is whether, similarly to yeast, plant cells have a cell wall integrity signaling and response system. Growing root hairs are sensitive to low pH and hypo-osmotic stress and are potentially good experimental systems for such investigations. The objectives of this study were: a) Optimize an experimental system to examine tomato (Solanum lycopersicum L. cv Micro-Tom) root hairs; b) Examine the response of root hairs to low pH and hypo-osmotic stress; c) Examine the role of oxidative modulation of the cell wall in these responses; and d) Evaluate the response of different hormonal mutants of Micro-Tom to these stress factors. Root hair elongation rates (µm.min-1) and the frequency of cell bursting were the major experimental parameters which were evaluated. Both low pH and, more markedly, hypo-osmotic stress caused significant reductions in elongation rates and the bursting of root hair tips. In a response curve to varying osmolarities of the external medium, root hair elongation rates increased with decreasing osmolarities until a threshold was reached and elongation rates decreased drastically and the bursting of root hairs began to be observed. Interactions between low pH and hypo-osmolarity were observed. The use of the inhibitor diphenylene iodonium (DPI) did not provide evidence for the involvement of plasma membrane NADPH in the response of root hairs to low pH and hypo-osmotic shock. However, a role for cell wall peroxidases was provided by use of the inhibitor salicylhydroxamic acid (SHAM). Root hairs of the hormonal mutants dgt (low sensitivity to auxin) and epi (ethylene super producer), but not not (deficient in abscisic acid), displayed a more effective response to hypo-osmotic shock than Micro-Tom, by decreasing elongation rates and cell bursting to a greater degree. This study provides strong evidence to suggest that root hairs have a cell wall integrity response system and that root hairs are potentially good cell model systems for such research

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