Thesis advisor: William H. Armstrong / The Oxygen-Evolving Complex (OEC) of Photosystem II (PSII) utilizes a Mn4Ca cluster to catalyze the conversion of water to dioxygen within plant chloroplasts. The active site of the water oxidase is found on the lumenal side of the thylakoid membrane. For many years, the nature of this convoluted system, including the unresolved structural arrangement of the OEC manganese-oxo aggregate, stimulated on-going research projects in a diverse set of scientific fields. A tetranuclear oxo-bridged manganese complex associated with calcium [Ca] and chloride [Cl], along with a redox active tyrosine (Tyr), is thought to be the center of this remarkable and unique biological machinery. An illustrious catalytic cycle, known as the Kok cycle, progresses through a series of five intermediate states (Si, i = 0-4) to conduct water oxidation and dioxygen evolution. A tentative structural proposal based on the single crystal X-ray diffraction (XRD) crystallographic measurements introduced a CaMn3 cubane cluster and an appended fourth manganese atom. It was proposed that water binds between the “dangling” Mn atom and the Ca atom, and that is where the O-O bond formation is proposed to occur, followed by O2 release without structural rearrangement of the cubane core. The plausible manganyl (MnV=O) species was also suggested as an intermediate in the S4 state for the O-O bond formation and release O2. We have examined plausible reactive manganyl species as are proposed to exist at the OEC S4 state. The existence of manganyl in synthetic model systems will be presented in Chapter 2. In this study, we utilized stopped-flow UV-vis spectroscopy and mass spectrometry to investigate the formation and the nature of the intermediate in the reaction between mononuclear Schiff base manganese complexes and a reagent that is often used for O atom transfer reactions. Chapter 3 involves establishment of a logical synthetic method to prepare the related complexes, Mn2O2(bpy/dmb)2(ArRCOO)2 [R = 2,6-diphenyl, 2,6-ditolyl]. The dimanganese-oxo center is considered as a basic unit on the path toward the construction of higher nuclearity of Mn aggregates, preferably Mn4 clusters to be used for OEC catalytic cycle mimicry. Controlled ligand exchange synthesis of this type of carboxylate-rich/bridged {Mn2O2} dimers will provide an alternate pathway toward obtaining the Mn aggregates that are not attainable by direct ‘self-assembly’ synthetic methods. In Chapter 4, we will describe a novel mixed-ligand tetranuclear Mn cluster of the adamantane core type, [Mn4(μ-O6)(bpy)4(py)4](ClO4)4. This cluster was synthesized by using a simple reaction and its spectroscopic characterization will be discussed. We will also demonstrate chromatographic behavior of the Mn clusters that we encountered in this work (see Appendix A). / Thesis (PhD) — Boston College, 2008. / Submitted to: Boston College. Graduate School of Arts and Sciences. / Discipline: Chemistry.

Dans ce travail, une configuration laminaire stratifiée est utilisée afin d’étudier les caractéristiques de la pyrolyse et de l’oxydation du charbon pulvérisé dans un mélange de flux réactif à la fois dans les conditions atmosphériques conventionnelles et dans des conditions de combustion enrichie en oxygène. Deux diagnostics optiques, la spectroscopie d’émission de flamme et la mesure de l’émission spontanée sont utilisés pour caractériser la structure de la flamme. Les profiles de concentration de trois radicaux excités, OH*, CH* and C*2 sont mesurés et analysés.Des simulations 1-D utilisant la cinétique détaillée y compris des sous-mécanismes de OH*, CH* and C*2 et de combustion de charbon sont effectuées et comparées avec des données expérimentales. La comparaison qualitative a montré que la configuration numérique actuelle était appropriée pour la prédiction des émissions de OH*, CH* and C*2. Les résultats prédits par l’approche numérique diffèrent avec les modifications apportées aux sous-modèles de charbon et aux paramètres cinétiques. Le modèle de pyrolyse et les matières volatiles semblent jouer des rôles plus importants. / In the present work, a laboratory-scale laminar strained configuration is used to investigate the characteristics of pulverized coal devolatilization and oxidation in a mixture of CH4/O2/N2 reactive flow both in conventional air conditions and in oxygen-enriched combustion conditions. Two optical diagnostics, Flame Emission Spectroscopy and measurement of spontaneous emission, are employed for the characterization of flame structure. The spatial concentration evolution of three excited radicals, OH*, CH*and C*2 , are measured and analyzed.1-D simulations using detailed gas-phase kinetics including OH*, CH*, and C*2 sub-mechanisms and coal combustion submodels are performed and compared with experimental data. Qualitative comparison with experiments showed that the current numerical configuration was suitable for the prediction of OH*, CH* and C*2 emission. The predicted results differed with changes to the coal sub-models and kinetic parameters. The devolatilization model and volatile matters seem to play more important roles.

The rat model of cervical dorsal root injury mimics the avulsion of dorsal roots in humans following brachial plexus injury, a condition that leads to debilitating sensory disturbances and intractable neuropathic pain that is not amenable to repair. This injury disrupts sensory inputs from the dorsal roots to the spinal cord and the damaged axons do not regenerate across the PNS-CNS interface, the dorsal root entry zone. This thesis investigated the role of OECs for repairing DRI-associated neuropathic pain, which has never been previously explored. Chapter 2 of this thesis characterised two DRI models, a partial (2-root) or complete (4-root) deafferentation of the rat forepaw. The 2-root animals developed persistent allodynia and hyperalgesia, whereas in the 4-root DRI, in contrast, reduced sensation (desensitisation) was found within the affected forepaw. The degree of deficits on performing complex, skilled forepaw movements was proportional to the severity of DRI. Sensory control of forepaw movements was permanently abolishes in animals with 4-root DRI. With the goal of repairing DRI-associated neuropathic pain, the efficacy of genetically modified OECs that carry a novel GDNF construct was examined. These modified GDNF-OECs were able to produce GDNF in vitro, however, died rapidly and failed to yield long term GDNF expression after both acute and delayed transplantation into the DRI spinal cord. Unmodified plain OECs were then used. The results show that delayed transplantation of OECs attenuated the development of DRI-associated allodynia and hyperalgesia. Central reorganisations occurred within the dorsal horn following DRI, including reduction in the area of deep dorsal horn, permanent depletion of IB4-labeled axons and restoration of CGRP-labelled afferents in the denervated superficial laminae. The development of neuropathic pain is suggested to be mediated by the aberrant expansion of large myelinated VGLUT1-positive afferents into the superficial laminae, which normally receive nociceptive inputs. The effect of OECs on modulating nociception seems to be mediated by factors other than inhibition of afferent sprouting. In conclusion, the results in this thesis demonstrated the potential effect of OECs for modulating DRI-associated neuropathic pain. This finding could have clinical applicability for resistant pain sequelae resulting from neurotrauma.

The photosynthetic water splitting reaction performed in green plants, algae and cyanobacteria is perhaps one of the most important reactions on the planet. The reaction is catalysed by a tetranuclear manganese cluster that is driven by sunlight and as such has received a high degree of interest in the context of solar fuels research. Due to the intricacy of the bioinorganic systems, the molecular mechanisms of the reactions are unknown and structural elucidation of the active sites is complicated. Computational techniques can provide considerable support in the analysis and interpretation of the complex EPR spectra of such biological systems. In this work, the molecular and electronic structures of several multinuclear manganese containing bioinorganic systems are investigated using BS-DFT. A particular focus of this work is the provision of high quality calculated EPR parameters yielding structural and mechanistic insight. In the first results chapter, the MnIIIMnIV superoxidised state of manganese catalase as well as azide inhibited manganese catalase is studied. Several variants are proposed and analysed on the basis of their calculated EPR parameters. The results presented in this chapter offer a new interpretation of previous experimental assignments. Chapter 6 features investigations on the S2 state of the Oxygen Evolving Complex of Photosystem II. In this chapter both the native OEC as well as the strontium substituted OEC are studied, in order to investigate how replacement of the calcium ion affects the structure of the OEC. The final results chapter presents calculations on the split signal S2Yz dot radical formed on the transition from the S2 to S3 state, as well as studying the S3 state. The calculation of various EPR hyperfine couplings and their comparison with available experimental data has provided key insights into the electronic structure of the OEC.

Present trends in the mainstream adoption of educational technology coupled to the increased acceptance and adoption of openness in terms of sharing resources and open access force higher education into a radical rethink of its structures and educational strategies. This article examines the current shift in focus from the simple production and sharing of open educational resources (OER) towards wider concepts such as open educational practices (OEP) and cultures (OEC). OER involves mostly educators whereas OEP and OEC demand the commitment of management, administrators and politicians.  This openness is already spawning alternative types of peer-based collaborative learning both inside and outside the formal education system. In particular the increased awareness of the importance of informal learning has raised a clear need for some kind of certification model and the current open badges initiative lead by Mozilla and several US authorities is examined and discussed. In 2011 the OER university partnership announced an innovative approach to combining formal and informal learning by planning to offer credible credentials for students who have acquired the necessary skills through their own learning paths. The road to future higher education may not be entirely behind the campus walls.

This thesis focus on the analysis of spin-lattice NMRD relaxation profilesmeasured in various complex systems such as proteins, zeolites and ionicliquids. Proton, deuterium and fluoride T1-NMRD relaxation profiles wereobtained from a fast-field cycling (FFC) instrument. It is found that alsopossible to obtain NMRD profiles from the molecular dynamics (MD)simulation trajectories. NMRD Profiles were analyzed by using differentrelaxation models, such as the Solomon-Bloembergen-Morgan (SBM) theoryand the Stochastic Liouville (SL) theory. Paper I described the hydration of protein PrxV obtained from a MDsimulation, and compared with the picture emerges from an analysis byusing a generally accepted relaxation model [appendix C]. The result showsthat the information from NMRD analysis is an averaged picture of watermolecules with similar relaxation times; and the MD simulations containsinformation of all types of interested water molecules with differentresidence times. In paper II NMRD profiles have been used to characterize the hydration ofthe oxygen-evolving complex in state S1 of photosystem II. NMRDexperiments were performed on both intact protein samples and Mndepletedsamples, and characteristic dispersion difference were foundbetween 0.03 MHz to 1 MHz; approximately. Both the SBM theory and theSL theory have been used to explain this dispersion difference, and it isfound that this is due to a paramagnetic enhancement of 1-2 water moleculesnearby ~10 Å from the spin center of the Mn4CaO5 cluster. The result showsthe reorientation of the molecular cluster is in μs time interval. Whencompare these two theories, the SL theory presented a better interpretationbecause parameters obtained from the SBM theory shows they didn’t fulfilthe presupposed perturbation criterion (the Kubo term). Paper III deals with the water dynamics in the restricted/confined spaces inthe zeolite samples (H-ZSM-5 and NH4-ZSM-5) and obtained by proton anddeuterium spin-lattice NMRD profiles. The results show that the spin-latticeNMRD can be used to characterize various zeolites. The temperature has aweak effect on the relaxation rate R1, but the change of different counter ionsmay change the hydration and the translational diffusion pores and givedifferent R1. Proton and fluoride NMRD profiles and MD simulations were both used tostudy the dynamics of BMIM[PF6] in paper IV. Results indicate the reorientation of the molecules are in the ns time regime, and the effectivecorrelation time obtained from 1H and 19F are the same. From the MDsimulation it is found the reorientation of [PF6]- ions is much faster (in ps)compare with BMIM+ ion which moves in the ns time range. With previous results, the FFC NMRD profiles are indeed very informativetools to study the molecular dynamics of complex systems. The MDsimulation can be used as a complementary method to obtain detailedinformation. By combine these two methods, it provide a more colorfulpicture in the study of protein hydration and liquid molecular dynamics.

No description available.

Due to its complex and multidisciplinary nature, the conceptual design phase of helicopters becomes critical in meeting customer satisfaction. Statistical (probabilistic) design methods can be employed to understand the design better and target a design with lower variability. In this thesis, a conceptual design and helicopter sizing methodology is developed and shown on a helicopter design for Turkey.

Photosynthetic water oxidation to yield the oxygen of the atmosphere is of paramount biological and also technical relevance, in the light of decreasing fossil fuel reserves. The splitting of water into hydrogen (on carriers) and oxygen takes place in a multimeric protein called Photosystem II (PSII). The rigorous understanding of nature´s solution for this thermodynamically and mechanistically highly demanding reaction is one approach towards the construction of an artificial hydrogen technology under exploitation of almost unlimited energy sources, sunlight and an ubiquitous substrate, water. This thesis aims at two aspects: (i) Electron and proton transferring amino acids and (ii) so far undetected chemical intermediates between water and O2(i) D1-Glu189 has been claimed to be involved (a) in the proton conducting network around the Mn4Ca-cluster and (b) as a direct ligand to Mn. We exchanged the negative Glu against the positive Arg or Lys or the neutral Glu without any effect on the relaxation times (ns-ms) of the various electron transfers in PSII. Our data exclude these postulated roles of D1-Glu189 and qualify a recently published structural model.(ii) Dioxygen is produced in what seems to be a single reaction step, although it involves the transfer of four electrons from bound water to the fourfold oxidised catalytic centre. No chemical intermediate (e.g. peroxide) has been detected by high resolving optical and magnetical spectroscopy. To overcome the detection problem of short lived intermediates we pushed the process backward by elevated oxygen pressure and found the first evidence for such an intermediate. The astonishing half suppression of oxygen evolution at only 2.3 bar O2 emphasised the small driving force of this important reaction. PSII operates at the energetic limits; this is why the atmospheric oxygen level cannot be pushed much above the present level.

<p>A molecular system capable of photoinduced water splitting is an attractive approach to solar energy conversion. This thesis deals with the functional characterization of molecular building blocks for the three principal functions of such a molecular system: Photoinduced accumulative charge separation, catalytic water oxidation, and catalytic proton reduction. </p><p>Systems combining a ruthenium-trisbipyridine photosensitizer with multi-electron donors in form of dinuclear ruthenium or manganese complexes were investigated in view of the rate constants of electron transfer and excited state quenching. The kinetics were studied in the different oxidation states of the donor unit by combination of electrochemistry and time resolved spectroscopy. The rapid excited state quenching by the multi-electron donors points to the importance of redox intermediates for efficient accumulative photooxidation of the terminal donor.</p><p>The redox behavior of manganese complexes as mimics of the water oxidizing catalyst in the natural photosynthetic reaction center was studied by electrochemical and spectroscopic methods. For a dinuclear manganese complex ligand exchange reactions were studied in view of their importance for the accumulative oxidation of the complex and its reactivity towards water. With the binding of substrate water, multiple oxidation in a narrow potential range and concomitant deprotonation of the bound water it was demonstrated that the manganese complex is capable of mimicking multiple aspects of photosynthetic water oxidation.</p><p>A dinuclear iron complex was investigated as biomimetic proton reduction catalyst. The complex structurally mimics the active site of the iron-only hydrogenase enzyme and was designed to hold a proton on the bridging ligand and a hydride on the iron centers. Thermodynamics and kinetics of the protonation reactions and the electrochemical behavior of the different protonation states were studied in view of their potential catalytic performance.</p>