abstract: Cancer is a disease which can affect all animals across the tree of life. Certain species have undergone natural selection to reduce or prevent cancer. Mechanisms to block cancer may include, among others, a species possessing additional paralogues of tumor suppressor genes, or decreasing the number of oncogenes within their genome. To understand cancer prevention patterns across species, I developed a bioinformatic pipeline to identify copies of 545 known tumor suppressor genes and oncogenes across 63 species of mammals. I used phylogenetic regressions to test for associations between cancer gene copy numbers and a species’ life history. I found a significant association between cancer gene copies and species’ longevity quotient. Additional paralogues of tumor suppressor genes and oncogenes is not solely dependent on body size, but rather the balance between body size and longevity. Additionally, there is a significance association between life history traits and genes that are both germline and somatic tumor suppressor genes. The bioinformatic pipeline identified large tumor suppressor gene and oncogene copy numbers in the naked mole rat (Heterocephalus glaber), armadillo (Dasypus novemcinctus), and the two-fingered sloth (Choloepus hoffmanni). These results suggest that increased paralogues of tumor suppressor genes and oncogenes are these species’ modes of cancer resistance. / Dissertation/Thesis / Pipeline results for cancer genes / Phylogenetic regressions with correction tests / Pipeline results for housekeeping genes / Masters Thesis Biology 2019

Incomplete biological concepts in lymphoid neoplasms still dictate to a large extent the limited availability of efficient targeted treatments, which entertains the mostly unsatisfactory clinical outcomes. Aberrant expression of the embryonal and lymphatic TCL1 family of oncogenes, i.e., the paradigmatic TCL1A, but also TML1 or MTCP1, is causally implicated in T- and B-lymphocyte transformation. TCL1A also carries prognostic information in these particular T-cell and B-cell tumors. More recently, the TCL1A oncogene has been observed also in epithelial tumors as part of oncofetal stemness signatures. Although the concepts on the modes of TCL1A dysregulation in lymphatic neoplasms and solid tumors are still incomplete, there are recent advances in defining the mechanisms of its (de)regulation. This review presents a comprehensive overview of TCL1A expression in tumors and the current understanding of its (dys)regulation via genomic aberrations, epigenetic modifications, or deregulation of TCL1A-targeting micro RNAs. We also summarize triggers that act through such transcriptional and translational regulation, i.e., altered signals by the tumor microenvironment. A refined mechanistic understanding of these modes of dysregulations together with improved concepts of TCL1A-associated malignant transformation can benefit future approaches to specifically interfere in TCL1A-initiated or -driven tumorigenesis.

No description available.

Recentemente, a expressão gênica dos receptores TLR foi encontrada em diversos tipos de células tumorais. A sua participação na biologia do câncer é controversa já que foram descritas ações pró e anti-tumorais após a ativação de sua sinalização. Na Leucemia Mielóide Crônica (LMC) nada se tem demonstrado. BCR-ABL é uma oncoproteína quimérica cujo sítio tirosina quinasa constitutivamente ativado promove inúmeras vias de sinalizações que desencadeia a transformação celular. Este trabalho se inicia com a hipótese de existir uma relação entre o oncogene BCR-ABL e a expressão dos receptores TLRs. Nós verificamos em células murinas TonB210.1 com expressão de BCR-ABL induzível por doxiciclina que Tlr1 e Tlr2 tem sua expressão gênica relativa aumentada na presença da oncoproteína. A regulação positiva de Tlr1 é dependente da ação tirosina quinasa de BCR-ABL. Também mostramos que as vias p38 e JNK estão reprimindo a expressão de Tlr1 induzida por BCR-ABL enquanto que a via ERK é utilizada pelo BCR-ABL para promovê-la. Por outro lado, observamos que a ligação de TLR1/TLR2 com seu agonista sintético Pam3CSK4 em células TonB210.1 BCR-ABL positivas induz um aumento da produção de IL-6 e leva ao aumento da resistência a morte quando induzida pelas drogas Ara-C e VP16. Em conclusão, estes resultados indicam que BCR-ABL esta regulando a expressão gênica de alguns TLRs. Por tanto esses dados contribuem para a compreensão sobre o comportamento de células tumorais BCR-ABL positivas em um contexto de infecção e por conseqüência, dão margem ao estudo de novos alvos de fator de risco para a LMC. / Recently, the gene expression of TLR receptors have been described in several kinds of tumour cells. Its participation in cancer biology is controversial because roles were already been described in pro and anti-tumoral activities after their signaling activation. In Chronic Myeloid Leukemia (CML) there are no published data. BCR-ABL is a quimeric protein and its tyrosine-kinase site is activated constitutively. Thus, many signaling pathways are activated and several cell processes are altered thereby resulting in cellular transformation. This work has started with the hypothesis that a putative relationship between the oncogene BCR-ABL and the expression of TLR receptors could exists. We verified in murine cells TonB210.1 BCR-ABL expression inducible by doxycicline that Tlr1 and Tlr2 have their relative gene expression up-regulated in the presence of the oncoprotein. Therefore the Tlr1 regulation is dependent of BCR-ABL tyrosine kinase action. Using MAPK inhibitors we showed that p38 and JNK pathways are suppressing the TLR1 induction by BCR-ABL while ERK pathway is used by the oncoprotein for promote it. On the other hand, we observed in TonB210.1 BCR-ABL positive cells that the binding of TLR1/TLR2 heterodimer to their synthetic agonist Pam3CSK4 induced an increased production of IL-6 and when these cells were induced by Ara-C and VP-16 drugs the apoptosis resistance increased. In conclusion, these results indicate that the oncoprotein regulates the gene expression of some TLRs. Therefore, this fact gives us data about the behavior of BCR-ABL positive tumor cells in the context of infection and in consequence the study of new risk factor targets for CML.

INTRODUÇÃO: Os adenomas hipofisários são neoplasias benignas que representam cerca de 15% das neoplasias intracranianas. Em sua maioria ocorre de forma esporádica. Estudos moleculares desses adenomas identificaram anormalidades genéticas que podem ter um papel na sua tumorigênese. Dentre alguns desses genes foram descritos os oncogenes GNAS e PTTG e os genes supressores tumorais AIP, CDKN1B e MEG3. OBJETIVO: realizar estudo molecular dos genes associados a tumorigênese através da pesquisa de mutações nos genes GNAS, AIP e CDKN1B e o estudo de expressão gênica de CDKN1B, PTTG e MEG3 em adenomas aparentemente esporádicos, correlacionando com os dados clínicos e laboratoriais, em pacientes acompanhados no serviço de Endocrinologia do HCFMUSP. CASUÍSTICA E MÉTODOS: Compreendeu 96 adenomas hipofisários aparentemente esporádicos: 41 somatotropinomas, 27 corticotropinomas, 21 adenomas clinicamente não funcionantes (ACNF) e 7 prolactinomas. Foi realizada avaliação restrospectiva dos dados clínicos e laboratoriais ao diagnóstico. Após a análise histológica por hematoxilinaeosina, foi realizada análise imunohistoquímica das proteínas Ki-67 e p53 e molecular do DNA genômico e RNA, extraídos do tecido tumoral. Análise mutacional das regiões codificantes de AIP e CDKN1B e dos hotspots de GNAS nos éxons 8 e 9 foi realizada através de amplificação por PCR e sequenciamento automático. A quantificação relativa do RNAm de CDKN1B, MEG3 e PTTG foi avaliada pelo método de 2-??Ct por PCR em tempo real. RESULTADOS: Presença de mutações somáticas no gene GNAS (gsp+) em 14,5% dos adenomas. Não houve diferenças significativas clínicas e laboratoriais entre os adenomas gsp+ e gsp-. Variantes com potencial patogênico não foram identificadas nos genes AIP e CDKN1B. A análise imunohistoquímica do Ki-67 apresentou média de 1,32% (0,9-4,5) e do p53 média de 1,04 (1,0-1,8). O gene CDKN1B apresentou expressão média de ,12 ± 0,74 (0,1-3,1), com expressão mais baixa nos corticotropinomas. O gene PTTG apresentou expressão média de 2,49 ± 3,10 (0,2-19,0), com maior expressão nos corticotropinomas. O gene MEG3 apresentou expressão média de 0,95 ± 1,38 (0,0-8,8), com valores mais baixos nos ACNF. Três padrões de cluster nos níveis de expressão de RNAm dos genes CDKN1B, PTTG e MEG3 foram identificados: cluster A = CDKN1B >= 1,85/ PTTG >= 1,25/ MEG3 >= 0,65 foi observado em 100% dos corticotropinomas; cluster B= CDKN1B >= 0,95/ PTTG >= 2,25/ MEG3 >= 0,65 observado apenas nos somatotropinomas (32%) e o cluster C= CDKN1B >= 0,95/ PTTG >= 1,25/ MEG3 >= 0,05 observado na maioria dos ACNF (73%). CONCLUSÕES: A maioria dos adenomas apresentaram índices de Ki-67 menor do que 3%. Em conformidade com este achado, a imunohistoquímica para p53 não se mostrou estatisticamente significativa. A mutação ativadora na proteína Gs? (gsp+) foi a mutação mais frequente em adenomas hipofisários esporádicos, principalmente em somatotropinomas. Não foram identificadas variantes com potencial patogênico nos genes AIP e CDKN1B, portanto, parece ser um evento raro em adenomas esporádicos. A expressão gênica aumentada do gene PTTG foi identificada principalmente nos corticotropinomas. No entanto, ela não foi preditiva de subtipo de adenoma. A expressão gênica do CDKN1B estava diminuída na maioria dos corticotropinomas e normal na maioria dos somatotropinomas e ACNF. A expressão gênica do MEG3 estava diminuída na maioria dos adenomas ACNF e corticotropinomas e normal na maioria dos somatotropinomas. Na análise de cluster hierárquico, foram identificados três padrões de expressão gênica que se correlacionaram com subtipo de adenoma hipofisário / BACKGROUND: Pituitary adenomas are benign tumors that account for about 15% of intracranial tumors. Mostly occurs sporadically. Molecular studies of these adenomas identified genetic abnormalities that may have a role in tumorigenesis. Some of these genes have been described as the oncogenes GNAS and PTTG and tumor suppressor genes AIP, CDKN1B and MEG3. OBJECTIVE: perform a molecular study of genes related in tumorigenesis to evaluate presence of mutations in GNAS, AIP and CDKN1B genes and gene expression analysis of CDKN1B, PTTG and MEG3 genes in apparently sporadic adenomas, correlating with the clinical and laboratory data from patients treated at the Endocrinology service of HCFMUSP.SUBJECTS AND METHODS: 96 apparently sporadic adenomas was included: 41 somatotropinomas, 27 corticotropinomas, 21 clinically nonfunctioning pituitary adenomas (NFPA) and seven prolactinomas. Retrospective evaluation of clinical and laboratory data from diagnosis. After histological analysis by hematoxylin-eosin staining, it was performed immunohistochemical analysis of Ki -67 and p53 proteins and molecular analysis of genomic DNA and RNA extracted from tumor tissue. Mutational analysis of coding regions of AIP and CDKN1B and hotspots exons 8 and 9 of GNAS was performed by PCR and automatic sequencing. Relative quantification of mRNA CDKN1B, MEG3 and PTTG was evaluated by 2-??Ct method using Real Time PCR. RESULTS: Presence of somatic mutations on GNAS gene (gsp+) in 14,5% of pituitary adenomas. There were no clinical and laboratorial differences between gsp+ and gsp- somatotropinomas. Variants with pathogenic potencial were not identified in AIP and CDKN1B genes. Imunohistochemical analysis showed mean of 1,32% (0,9-4,5) for Ki-67 and mean of 1,04% (1,0-1,8) for p53. Gene expression of CDKN1B presented a mean of 1,12 ± 0,74 (0,1-3,1) with lower expression in corticotropinomas. Gene expression of PTTG presented a mean of 2,49 ± 3,10 (0,2-19,0) with higher expression in corticotropinomas. Gene expression of MEG3 presented a mean of 0,95 ± 1,38 (0,0-8,8) with lower expression in NFPA. Three cluster patterns in the levels of mRNA expression of genes CDKN1B, PTTG and MEG3 were identified: cluster A = CDKN1B >= 1,85/ PTTG >= 1,25/ MEG3 >= 0,65 observed in 100% of corticotropinomas; cluster B= CDKN1B >= 0,95/ PTTG >= 2,25/ MEG3 >= 0,65 observed only in somatotropinomas (32%) and cluster C= CDKN1B >= 0,95/ PTTG >= 1,25/ MEG3 >= 0,05 observed in most of NFPA (73%). CONCLUSIONS: Most of the adenomas showed Ki -67 index lower than 3%. In accordance with this finding, immunohistochemistry for p53 was not statistically significant. The activating mutation in the Gs? protein (gsp+) was the most common mutation in sporadic pituitary adenomas, particularly in somatotropinomas. Variants with pathogenic potential have not been identified in the AIP and CDKN1B gene therefore seems to be a rare event in sporadic adenomas. Increased gene expression of PTTG was primarily identified in corticotropinomas. However, it was not predictive of adenoma subtype. The gene expression of CDKN1B was decreased in most corticotropinomas and normal in most somatotropinomas and NFPA. The gene expression of MEG3 was decreased in most of NFPA and corticotropinomas, and normal in most somatotropinomas. In hierarchical cluster analysis was identified three patterns of gene expression that correlated with pituitary adenoma subtype

[Truncated abstract] The treatment of childhood acute lymphoblastic leukaemia (ALL) is one of the great success stories of paediatric oncology, transforming a universally fatal disease into one where 75 to 90% of children are now cured. Although in the past survival for children with T-cell ALL (T-ALL) lagged behind that of children with pre-B ALL, the use of contemporary intensified treatment strategies has significantly diminished this difference, with many investigators reporting similar cure rates for both groups of patients. Despite these marked improvements, numerous challenges still face physicians treating children with T-ALL. Firstly, there have been no additional major improvements in outcome over the last decade, despite additional treatment intensification. Secondly, effective regimens remain elusive for treating children with relapsed T-ALL or patients with resistant disease. Finally, there is a need to identify patients currently potentially overtreated and thus unnecessarily subjected to acute and long term toxicities without benefit. A major challenge therefore, is the identification of novel reliable prognostic markers, in order to identify patients at high risk of relapse and conversely those least likely to relapse, to guide therapy appropriately. Children predicted with a high risk of relapse would be candidates for intensification of therapy and/or novel experimental agents. Conversely, patients predicted to be at low risk of relapse could be offered clinical trials using reduced intensity therapy, thereby minimising toxicity. '...' Crucially, the 3-gene predictor was validated in a completely independent cohort of T-ALL patients, also treated on CCG style therapy. Our 3-gene predictor appears to identify a high risk group of patients which require alternative therapeutic strategies in order to attain a cure. This study has also identified a potential novel agent for the treatment of T-ALL, which may be used as an anthracycline potentiator or anthracycline-sparing agent. We hypothesised that genes associated with a relapse signature provide promising targets for novel therapies. We tested the hypothesis that CFLAR, an inhibitor of the extrinsic apoptotic pathway and a member of the 3-gene predictor may be involved in the development of resistance to chemotherapy. To test our hypothesis we used a novel agent, 2-cyano-3, 12-dioxooleana-1,9 (11)-dien-28-oic acid (CDDO), previously shown to inhibit CFLAR protein, in two cell lines established in our laboratory from paediatric patients diagnosed with T-ALL. We found that CDDO displayed single agent activity at sub-micromolar concentrations in both cell lines tested. Importantly, minimally lethal doses of CDDO resulted in significant enhancement of doxorubicin mediated cytotoxicity in one of the cell lines assessed. The findings presented as part of this thesis have revealed the value of gene expression analysis of childhood T-ALL for identifying novel prognostic markers. This study has shown that expression profiles may provide better prognostic information than currently available clinical variables. Additionally, genes that constitute a relapse signature may provide rational targets for novel therapies, as demonstrated in this study, which assessed a potential novel agent for the treatment of T-ALL.

INTRODUÇÃO: Os adenomas hipofisários são neoplasias benignas que representam cerca de 15% das neoplasias intracranianas. Em sua maioria ocorre de forma esporádica. Estudos moleculares desses adenomas identificaram anormalidades genéticas que podem ter um papel na sua tumorigênese. Dentre alguns desses genes foram descritos os oncogenes GNAS e PTTG e os genes supressores tumorais AIP, CDKN1B e MEG3. OBJETIVO: realizar estudo molecular dos genes associados a tumorigênese através da pesquisa de mutações nos genes GNAS, AIP e CDKN1B e o estudo de expressão gênica de CDKN1B, PTTG e MEG3 em adenomas aparentemente esporádicos, correlacionando com os dados clínicos e laboratoriais, em pacientes acompanhados no serviço de Endocrinologia do HCFMUSP. CASUÍSTICA E MÉTODOS: Compreendeu 96 adenomas hipofisários aparentemente esporádicos: 41 somatotropinomas, 27 corticotropinomas, 21 adenomas clinicamente não funcionantes (ACNF) e 7 prolactinomas. Foi realizada avaliação restrospectiva dos dados clínicos e laboratoriais ao diagnóstico. Após a análise histológica por hematoxilinaeosina, foi realizada análise imunohistoquímica das proteínas Ki-67 e p53 e molecular do DNA genômico e RNA, extraídos do tecido tumoral. Análise mutacional das regiões codificantes de AIP e CDKN1B e dos hotspots de GNAS nos éxons 8 e 9 foi realizada através de amplificação por PCR e sequenciamento automático. A quantificação relativa do RNAm de CDKN1B, MEG3 e PTTG foi avaliada pelo método de 2-??Ct por PCR em tempo real. RESULTADOS: Presença de mutações somáticas no gene GNAS (gsp+) em 14,5% dos adenomas. Não houve diferenças significativas clínicas e laboratoriais entre os adenomas gsp+ e gsp-. Variantes com potencial patogênico não foram identificadas nos genes AIP e CDKN1B. A análise imunohistoquímica do Ki-67 apresentou média de 1,32% (0,9-4,5) e do p53 média de 1,04 (1,0-1,8). O gene CDKN1B apresentou expressão média de ,12 ± 0,74 (0,1-3,1), com expressão mais baixa nos corticotropinomas. O gene PTTG apresentou expressão média de 2,49 ± 3,10 (0,2-19,0), com maior expressão nos corticotropinomas. O gene MEG3 apresentou expressão média de 0,95 ± 1,38 (0,0-8,8), com valores mais baixos nos ACNF. Três padrões de cluster nos níveis de expressão de RNAm dos genes CDKN1B, PTTG e MEG3 foram identificados: cluster A = CDKN1B >= 1,85/ PTTG >= 1,25/ MEG3 >= 0,65 foi observado em 100% dos corticotropinomas; cluster B= CDKN1B >= 0,95/ PTTG >= 2,25/ MEG3 >= 0,65 observado apenas nos somatotropinomas (32%) e o cluster C= CDKN1B >= 0,95/ PTTG >= 1,25/ MEG3 >= 0,05 observado na maioria dos ACNF (73%). CONCLUSÕES: A maioria dos adenomas apresentaram índices de Ki-67 menor do que 3%. Em conformidade com este achado, a imunohistoquímica para p53 não se mostrou estatisticamente significativa. A mutação ativadora na proteína Gs? (gsp+) foi a mutação mais frequente em adenomas hipofisários esporádicos, principalmente em somatotropinomas. Não foram identificadas variantes com potencial patogênico nos genes AIP e CDKN1B, portanto, parece ser um evento raro em adenomas esporádicos. A expressão gênica aumentada do gene PTTG foi identificada principalmente nos corticotropinomas. No entanto, ela não foi preditiva de subtipo de adenoma. A expressão gênica do CDKN1B estava diminuída na maioria dos corticotropinomas e normal na maioria dos somatotropinomas e ACNF. A expressão gênica do MEG3 estava diminuída na maioria dos adenomas ACNF e corticotropinomas e normal na maioria dos somatotropinomas. Na análise de cluster hierárquico, foram identificados três padrões de expressão gênica que se correlacionaram com subtipo de adenoma hipofisário / BACKGROUND: Pituitary adenomas are benign tumors that account for about 15% of intracranial tumors. Mostly occurs sporadically. Molecular studies of these adenomas identified genetic abnormalities that may have a role in tumorigenesis. Some of these genes have been described as the oncogenes GNAS and PTTG and tumor suppressor genes AIP, CDKN1B and MEG3. OBJECTIVE: perform a molecular study of genes related in tumorigenesis to evaluate presence of mutations in GNAS, AIP and CDKN1B genes and gene expression analysis of CDKN1B, PTTG and MEG3 genes in apparently sporadic adenomas, correlating with the clinical and laboratory data from patients treated at the Endocrinology service of HCFMUSP.SUBJECTS AND METHODS: 96 apparently sporadic adenomas was included: 41 somatotropinomas, 27 corticotropinomas, 21 clinically nonfunctioning pituitary adenomas (NFPA) and seven prolactinomas. Retrospective evaluation of clinical and laboratory data from diagnosis. After histological analysis by hematoxylin-eosin staining, it was performed immunohistochemical analysis of Ki -67 and p53 proteins and molecular analysis of genomic DNA and RNA extracted from tumor tissue. Mutational analysis of coding regions of AIP and CDKN1B and hotspots exons 8 and 9 of GNAS was performed by PCR and automatic sequencing. Relative quantification of mRNA CDKN1B, MEG3 and PTTG was evaluated by 2-??Ct method using Real Time PCR. RESULTS: Presence of somatic mutations on GNAS gene (gsp+) in 14,5% of pituitary adenomas. There were no clinical and laboratorial differences between gsp+ and gsp- somatotropinomas. Variants with pathogenic potencial were not identified in AIP and CDKN1B genes. Imunohistochemical analysis showed mean of 1,32% (0,9-4,5) for Ki-67 and mean of 1,04% (1,0-1,8) for p53. Gene expression of CDKN1B presented a mean of 1,12 ± 0,74 (0,1-3,1) with lower expression in corticotropinomas. Gene expression of PTTG presented a mean of 2,49 ± 3,10 (0,2-19,0) with higher expression in corticotropinomas. Gene expression of MEG3 presented a mean of 0,95 ± 1,38 (0,0-8,8) with lower expression in NFPA. Three cluster patterns in the levels of mRNA expression of genes CDKN1B, PTTG and MEG3 were identified: cluster A = CDKN1B >= 1,85/ PTTG >= 1,25/ MEG3 >= 0,65 observed in 100% of corticotropinomas; cluster B= CDKN1B >= 0,95/ PTTG >= 2,25/ MEG3 >= 0,65 observed only in somatotropinomas (32%) and cluster C= CDKN1B >= 0,95/ PTTG >= 1,25/ MEG3 >= 0,05 observed in most of NFPA (73%). CONCLUSIONS: Most of the adenomas showed Ki -67 index lower than 3%. In accordance with this finding, immunohistochemistry for p53 was not statistically significant. The activating mutation in the Gs? protein (gsp+) was the most common mutation in sporadic pituitary adenomas, particularly in somatotropinomas. Variants with pathogenic potential have not been identified in the AIP and CDKN1B gene therefore seems to be a rare event in sporadic adenomas. Increased gene expression of PTTG was primarily identified in corticotropinomas. However, it was not predictive of adenoma subtype. The gene expression of CDKN1B was decreased in most corticotropinomas and normal in most somatotropinomas and NFPA. The gene expression of MEG3 was decreased in most of NFPA and corticotropinomas, and normal in most somatotropinomas. In hierarchical cluster analysis was identified three patterns of gene expression that correlated with pituitary adenoma subtype

Recentemente, a expressão gênica dos receptores TLR foi encontrada em diversos tipos de células tumorais. A sua participação na biologia do câncer é controversa já que foram descritas ações pró e anti-tumorais após a ativação de sua sinalização. Na Leucemia Mielóide Crônica (LMC) nada se tem demonstrado. BCR-ABL é uma oncoproteína quimérica cujo sítio tirosina quinasa constitutivamente ativado promove inúmeras vias de sinalizações que desencadeia a transformação celular. Este trabalho se inicia com a hipótese de existir uma relação entre o oncogene BCR-ABL e a expressão dos receptores TLRs. Nós verificamos em células murinas TonB210.1 com expressão de BCR-ABL induzível por doxiciclina que Tlr1 e Tlr2 tem sua expressão gênica relativa aumentada na presença da oncoproteína. A regulação positiva de Tlr1 é dependente da ação tirosina quinasa de BCR-ABL. Também mostramos que as vias p38 e JNK estão reprimindo a expressão de Tlr1 induzida por BCR-ABL enquanto que a via ERK é utilizada pelo BCR-ABL para promovê-la. Por outro lado, observamos que a ligação de TLR1/TLR2 com seu agonista sintético Pam3CSK4 em células TonB210.1 BCR-ABL positivas induz um aumento da produção de IL-6 e leva ao aumento da resistência a morte quando induzida pelas drogas Ara-C e VP16. Em conclusão, estes resultados indicam que BCR-ABL esta regulando a expressão gênica de alguns TLRs. Por tanto esses dados contribuem para a compreensão sobre o comportamento de células tumorais BCR-ABL positivas em um contexto de infecção e por conseqüência, dão margem ao estudo de novos alvos de fator de risco para a LMC. / Recently, the gene expression of TLR receptors have been described in several kinds of tumour cells. Its participation in cancer biology is controversial because roles were already been described in pro and anti-tumoral activities after their signaling activation. In Chronic Myeloid Leukemia (CML) there are no published data. BCR-ABL is a quimeric protein and its tyrosine-kinase site is activated constitutively. Thus, many signaling pathways are activated and several cell processes are altered thereby resulting in cellular transformation. This work has started with the hypothesis that a putative relationship between the oncogene BCR-ABL and the expression of TLR receptors could exists. We verified in murine cells TonB210.1 BCR-ABL expression inducible by doxycicline that Tlr1 and Tlr2 have their relative gene expression up-regulated in the presence of the oncoprotein. Therefore the Tlr1 regulation is dependent of BCR-ABL tyrosine kinase action. Using MAPK inhibitors we showed that p38 and JNK pathways are suppressing the TLR1 induction by BCR-ABL while ERK pathway is used by the oncoprotein for promote it. On the other hand, we observed in TonB210.1 BCR-ABL positive cells that the binding of TLR1/TLR2 heterodimer to their synthetic agonist Pam3CSK4 induced an increased production of IL-6 and when these cells were induced by Ara-C and VP-16 drugs the apoptosis resistance increased. In conclusion, these results indicate that the oncoprotein regulates the gene expression of some TLRs. Therefore, this fact gives us data about the behavior of BCR-ABL positive tumor cells in the context of infection and in consequence the study of new risk factor targets for CML.

Les tumeurs de vessie suivent deux voies de progression tumorale. La voie des carcinomes in situ (CIS) qui progressent pour envahir la membrane basale puis le muscle, et la voie des tumeurs papillaires de bas grade qui progressent peu mais qui récidivent fréquemment. Environ 65% des tumeurs papillaires de bas grade présentent une mutation du gène FGFR3 et récemment des protéines de fusion FGFR3-TACC3 ont été observées dans les tumeurs de vessie (dans 10% des tumeurs invasives). Le rôle oncogénique du récepteur FGFR3 muté et de FGFR3-TACC3 a été démontré in vivo et in vitro. Cependant, les voies de signalisation du récepteur FGFR3 muté ou de FGFR3-TACC3 sont à l’heure actuelle très peu caractérisées. Dans ce contexte, deux approches ont été mises en place pour caractériser ces voies de signalisation. La première s’appuie sur l’étude de la phosphorylation des protéines p38, AKT et ERK1/2 par le récepteur FGFR3 muté (S249C) ou sauvage dans la lignée cellulaire fibroblastique NIH3T3, et a permis d’identifier les protéines p38 et AKT comme activées par le récepteur FGFR3 muté et nécessaire pour induire la transformation cellulaire. L’étude de l’activation de ces deux voies de signalisation a été réalisée dans des lignées cellulaires dérivées de tumeurs de vessie exprimant le récepteur FGFR3 muté ou FGFR3-TACC3 de manière endogène et a montré que leur activation était dépendante de celle du récepteur FGFR3. De plus nous avons montré que les protéines p38 et AKT sont impliquées dans le maintien d’une boucle de rétro-contrôle positive entre FGFR3 et MYC : l’activation de FGFR3 induit une surexpression de MYC qui en retour promeut l’expression de FGFR3. La seconde approche est basée sur une étude visant à identifier les partenaires protéiques de FGFR3 par spectrométrie de masse après immunoprécipitation de celui-ci qui avait été réalisée précédemment au laboratoire. L’analyse des données a permis l’obtention d’une liste de 60 protéines identifiées comme partenaires protéiques de FGFR3 avec une grande confiance. La construction d’un réseau à partir de cette liste n’a pas été possible (trop peu d’interactions existant entre ces protéines), nous avons donc développé un algorithme (PEPPER) en collaboration avec un étudiant en bio-informatique au laboratoire, Rémy Nicolle, pour proposer un réseau de signalisation de FGFR3.Les deux approches mises en place au cours de cette thèse nous ont permis de mieux caractériser les voies de signalisation du récepteur FGFR3. L’identification d’une boucle de rétrocontrôle entre FGFR3 et MYC a permis de mieux comprendre pourquoi le récepteur FGFR3 possède des propriétés oncogéniques, et de proposer les protéines p38 et AKT comme cibles thérapeutiques potentielles pour traiter les tumeurs de vessie exprimant le récepteur FGFR3 altéré. La construction du réseau de signalisation de FGFR3 via PEPPER donne une vue d’ensemble des voies de signalisation de FGFR3 et ouvre de nouvelles pistes à étudier. / Bladder cancer progression can be divided in two main pathways. The pathway of In Situ Carcinoma (CIS) which progress through an invasion of the basement membrane and then the muscle and the pathway of Ta papillary tumors which change little but recur frequently after tumor resection. Approximately 65% of Ta papillary tumors harboring a FGFR3 mutation and recently FGFR3-TACC3 fusion proteins have been observed in bladder tumors (about 10% of bladder tumors). The oncogenic role of the mutated FGFR3 receptor and of the FGFR3-TACC3 fusion protein has been demonstrated in vivo and in vitro. However signaling pathways activated by the mutated FGFR3 receptor or by the FGFR3-TACC3 fusion protein are currently poorly characterized.In this context, two approaches have been developed to characterize these signaling pathways. The first is based on the study of p38, AKT and ERK1/2 phosphorylation by the mutated receptor (S249C) or the wild type receptor in the NIH3T3 fibroblastic cell line. This study allowed identifying p38 and AKT as activated by the mutated FGFR3 receptor. Moreover, activation of p38 and AKT by the mutated receptor is critical for cell transformation. Study of the activation of these two signaling has been realized in human bladder cancer cell lines endogenously expressing the mutated FGFR3 receptor or the FGFR3-TACC3 fusion protein. Moreover, we showed that p38 and AKT are involved in the maintenance of a FGFR3/MYC feedback positive loop: FGFR3 activation induce MYC over expression which in turns promotes FGFR3 expression. The second approach is based on a study whose aim was to identify FGFR3 proteins partners by mass spectrometry after a FGFR3 immunoprecipitation, which has been previously realized in the lab. Data analyze led to the obtaining of a list of 60 proteins identified has FGFR3 protein partners with a high confidence. Construction of a FGFR3 network with this list was not possible (too little interactions existing between these proteins), so we developed an algorithm (PEPPER) in collaboration with a student in bioinformatics in the lab, Remy Nicolle, to propose a FGFR3 signaling network.The two approaches developed during this thesis allowed us to better characterize the FGFR3 signaling pathways. Identification of a FGFR3/MYC feedback loop allowed us to better understand why the altered FGFR3 has oncogenic properties and to propose p38 and AKT as news promising therapeutic targets, to treat human bladder tumors harboring the altered FGFR3 receptor. Construction of the FGFR3 signaling network with the algorithme PEPPER give an overview of the FGFR3 signaling pathways and open new tracks to explore.

Crown gall disease is an agricultural problem caused by the soil-borne bacterium, Agrobacterium tumefaciens. A. tumefaciens oncogenes cause transformed plant cells to overproduce the hormones, auxin and cytokinin. High hormone levels cause unorganized plant cell growth resulting in a gall. Control of crown gall disease is difficult because after plant cell transformation has occurred, the bacterium is no longer required for the disease to progress. Apple trees engineered to express double-stranded RNA of two A. tumefaciens oncogenes, ipt and iaaM, silenced the expression of the wild-type oncogenes and prevented crown gall disease. Only the iaaM oncogene was targeted for posttranscriptional gene silencing (PTGS) as measured by biological assays and by quantitative reverse-transcription polymerase chain reaction (q-RTPCR) on transgenic tissue. However, if the translation initiation sequence of the iaaM construction was eliminated, gall formation was not prevented, indicating that translatable RNA initiates silencing whereas untranslatable RNA does not. Other data indicate that the Arabidopsis thaliana micro-RNA pathway gene is involved in A. tumefaciens-mediated tumorigenesis. A. thaliana plants with a mutation in HEN1, a gene required for micro-RNA maturation, demonstrated a tenfold reduction in tumorigenesis upon A. tumefaciens infection compared to wild-type. The same plant line showed no difference in T-DNA transfer and nuclear uptake. / Graduation date: 2006