Author did not provide abstract.

Orientador: Hiroshi Aoyama / Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-06T06:33:37Z (GMT). No. of bitstreams: 1 Sousa_RobertaReginaRuelade_M.pdf: 3257089 bytes, checksum: 29f24a432f8c0bfd7dd71af48cc7608a (MD5) Previous issue date: 2005 / Resumo: As proteínas tirosina fosfatases (PTP) (EC 3.1.3.48) são enzimas regulatórias chaves que participam na transdução de sinal e são essenciais na regulação do crescimento, diferenciação, ciclos celulares, na transcrição gênica, resposta imune e outros processos. Esta classe de enzimas, que contém cisteína no sítio ativo, pode ser inativada por agentes oxidantes. Neste trabalho, estudamos os efeitos de peróxido de hidrogênio e t-butil hidroperóxido, compostos que induzem estresse oxidativo, na atividade de uma PTP purificada de membranas de linfócitos humanos, indicativamente a CD45. A PTP foi purificada de membranas de linfócitos humanos através de cromatografias de troca iônica (DEAE Sepharose) e exclusão molecular (Sephacryl S-200). A purificação enzimática foi acompanhada por SDS-PAGE e eletroforese bidimensional. A atividade enzimática foi determinada através de incubação a 37°C por 30 min em pH 5,0 em presença de 5 mM de p-nitrofenil fosfato (pNPP) como substrato. A enzima obtida da cromatografia de exclusão molecular apresentou uma massa molecular relativa de aproximadamente 200 kDa, reconheceu mais eficientemente tirosina fosfato (cerca de 3,2 vezes) como substrato quando comparado ao pNPP, e foi inibida por inibidores específicos de PTP, tais como vanadato (40%), pervanadato (100%), p-cloromercuribenzoato (20%) and Cu2+ (95%). Ácido okadáico, um inibidor específico de serina e treonina proteína fosfatases, não afetou a atividade da PTP de membranas de linfócitos. Estes resultados de caracterização sugerem fortemente que a PTP purificada de membranas de linfócitos humanos é a CD45. Peróxido de hidrogênio e t-butil hidroperóxido inibiram a atividade dessa proteína com valores de IC50 (concentração do composto que produz 50% de inibição enzimática) de 50 µM e 16 mM, respectivamente. Glutationa reduzida (GSH) protegeu parcialmente a enzima contra estes oxidantes, porém proteções totais foram obtidas quando se adicionava 250 mM de desferoxamina ao meio de ensaio. Nossos resultados sugerem que essa proteína pode ser regulada por alteração do estado de oxidação dos grupos funcionais do sítio ativo e que esta regulação poderia fornecer um mecanismo de controle celular através de espécies reativas de oxigênio / Abstract: Protein phosphatases, that dephosphorylate proteins in residues of threonine, serine and tyrosine, are a class of enzymes that can be stressed by compounds present in oxidant or reductant environments. In particular, the protein tyrosine phosphatases (PTP) (EC 3.1.3.48) are key regulatory enzymes that participate in signal transduction and are essential for regulating cellular growth, differentiation, cell cycle, gene transcription, immune response and other processes. This class of enzymes, which contain cysteine in the active site, can be inactivated by oxidant reagents. In this work we have studied the effect of hydrogen peroxide and t-butyl hydroperoxide, compounds that induce oxidative stress, on a purified PTP (CD45) from membrane human lymphocytes. PTP was purified from human lymphocyte membranes through ion exchange (DEAE Sepharose) and molecular exclusion (Sephacryl S-200) chromatographies. The enzyme purification was followed by SDS-PAGE and 2D electrophoresis. The enzyme activity was determined by incubation at 37oC for 30 minutes at pH 5.0 in presence of 5 mM p-nitrophenylphosphate (pNPP) as substrate. The enzyme obtained from molecular exclusion chromatography had a relative molecular mass of approximately 200 kDa, recognized more efficiently tyrosine phosphate (about 3.2-fold) as substrate when compared with p-NPP, and was inhibited by specific PTP inhibitors, such as, vanadate (40%), pervanadate (100%), p-chloromercuribenzoate (20%) and Cu2+ (95%). Okadaic acid, a specific serine and threonine protein phosphatases inhibitor, did not significantly affect the lymphocyte membrane PTP activity. These characterization results strongly suggest that the membrane PTP purified from human lymphocytes was the CD45. Hydrogen peroxide and t-butyl hydroperoxide inhibited the CD45 activities with IC50 (concentration of compound that produces 50% enzyme inhibition) values of 50 µM and 16 mM, respectively. Reduced glutathione (GSH) partially protected the enzyme against these oxidations, but full protections were observed when 250 mM deferoxamine were added to the assay medium. Our results suggest that CD45 can be regulated by altering the oxidation state of active site functional groups, and that this regulation could provide a mechanism of cell control by reactive oxygen species / Mestrado / Bioquimica / Mestre em Biologia Funcional e Molecular

Orientador: Everardo Magalhães Carneiro / Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-16T00:20:04Z (GMT). No. of bitstreams: 1 Cappelli_AnaPaulaGameiro_M.pdf: 8746314 bytes, checksum: fffd531f3decda018f572cfc7c7f2be6 (MD5) Previous issue date: 2009 / Resumo: A desnutrição protéica promove redução da secreção de insulina devida inúmeras alterações moleculares nas células B pancreáticas. Recentemente foi demonstrado que o estado redox pode modular a secreção de insulina em condições fisiológicas. No entanto, a correlação entre as alterações no estado redox e na secreção de insulina em ratos submetidos à desnutrição protéica não é conhecida. Assim, nosso objetivo foi avaliar o impacto do estresse oxidativo na secreção de insulina em ilhotas de ratos desnutridos. Ratos machos Wistar foram tratados com dieta normoprotéica (NP-17%) ou hipoprotéica (LP-6%) por 60 dias. Após isolamento das ilhotas, foi medida atividade e o conteúdo protéico das enzimas antioxidantes SOD, GPx e a CAT. Para a secreção estática de insulina, as ilhotas foram pré-incubadas em 5.6 mM de glicose (GLI) com ou sem H2O2, na ausência ou presença de n-acetil cisteína (NAC) e posteriormente incubadas em diferentes concentrações de GLI. Observamos aumento da atividade da SOD (21.18±2.1-30.5.±2 µmoles/min/mg proteína NP-LP respectivamente), redução na CAT (9±1.2-5.22±0.73 µmoles/min/mg proteína NP-LP respectivamente) e nenhuma alteração na GPx em ilhotas de ratos desnutrido comparada com ilhotas de ratos controle. Apesar de observarmos tendência de aumento no conteúdo protéico das enzimas antioxidantes em LP, não houve diferença significativa de nenhuma das enzimas. A secreção de insulina de ratos LP que ficaram expostas a 33mM de glicose na incubação, retornou a níveis basais (GLI 2.8 mM) quando préincubado com 100 µM de H2O2, enquanto para as ilhotas de ratos controle foi necessário a adição de 300 ?M de H2O2 na pré-incubação para retornar aos níveis basais. Na presença de 10 mM de NAC + 150 µM de H2O2, durante a pré-incubação, e posterior incubação em 33 mM de glicose, observou-se redução significante da secreção de NP e aumento em LP. Estes resultados sugerem que as ilhotas pancreáticas de ratos desnutridos pré tratadas com H2O2 e posteriormente expostas a altas concentrações de glicose, são mais sensíveis ao H2O2 possivelmente devido à capacidade reduzida de detoxificação de espécies reativas de oxigênio (EROS). / Abstract: Protein malnutrition induces pacreatic B-cells molecular alterations, reducing insulin secretion. It has been recently demonstrated that redox status may control insulin secretion under physiological conditions. However, protein malnutrition effects in redox modulation of insulin secretion is unknown. Thus, our aim was to evaluate oxidative stress impact upon insulin secretion in isolated islets from protein undernourished rats. Male Wistar rats were treated with normoproteic diet (NP-17%) or with a low protein diet (LP-6%) for sixty days. After islets isolation, it was measured antioxidant enzymes SOD, GPX and CAT activities and protein content. For insulin secretion measurement, islets were pre-incubated with glucose 5.6 (GLI) mM with or without H2O2 at the presence and absence of N-acetyl-cisteyne (NAC) and after that islets were incubated with diferent GLI concentration. SOD and CAT activities were significant increased (21.18±2.1-30.5.±2 µmoles/min/mg protein for NP-LP respectively) and decreased (9±1.2-5.22±0.73 µmoles/min/mg protein for NP-LP respectively) respectively, whereas GPX did not show any alteration. Despite a tendency of increase in the LP protein content of antioxidant enzymes, no significant differences were observed. When incubated with glucose 33mM, LP insulin secretion returned to baseline values (GLI 2.8 mM) when it was pre-incubated with H2O2 100 µM, whereas NP islets returned to baseline levels when pre-incubated with H2O2 300 ?M. When islets were pre-incubated with NAC 10 mM + H2O2 150 µM and further incubated with glucose 33 mM, insulin secretion was reduced in NP, whereas in LP it was increased. Taken together, these datasuggest that pancreatic islets from undernourished rats when pre-treated with H2O2 and thereafter challenged with high glucose concentrations are more sensitive to H2O2, probably due to their lower capacity to detoxify reactive oxygen species (ROS). / Mestrado / Fisiologia / Mestre em Biologia Funcional e Molecular

Orientador: Hiroshi Aoyama / Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-22T19:29:02Z (GMT). No. of bitstreams: 1 Leme_CamilaWielewski_M.pdf: 1648747 bytes, checksum: 5bd3c268b5ff076939204e230a1dc0e9 (MD5) Previous issue date: 2013 / Resumo: Atualmente, muito tem sido descoberto acerca dos mecanismos de controle do crescimento e coordenação celular, principalmente em células eucarióticas. Dentre tais mecanismos, o balanço entre a fosforilação e a desfosforilação de proteínas é a base para o controle de diversos eventos biológicos. As fosfatases são hidrolases que utilizam como substrato fosfatomonoésteres, e são amplamente distribuídas na natureza. As fosfatases ácidas (FAcs) são enzimas que apresentam melhor atividade em meio ácido. O objetivo do presente trabalho é estudar o efeito de peróxido de hidrogênio em duas fosfatases ácidas cujos sítios ativos contêm cisteína. Para tanto, FAc de sementes de mamona e FAc de rim bovino, ambas obtidas previamente em nosso laboratório, foram utilizadas no estudo. A primeira é uma glicoproteína, ao passo que a segunda não contém carboidrato em sua estrutura. Ensaios enzimáticos utilizando o substrato sintético p-nitrofenilfosfato (pNPP) foram realizados, em diferentes condições de incubação e exposição das enzimas. A FAc de mamona apresentou grande resistência ao peróxido de hidrogênio (H2O2), fato que se mostrou independente da presença de carboidrato em sua estrutura. Ensaios na presença de ditiotreitol (DTT) ou glutationa reduzida (GSH) provocaram inibição da enzima, porém a combinação de DTT ou GSH a H2O2 foi capaz de recuperar completamente a atividade enzimática. A exposição da FAc de mamona a DTT ou GSH não protegeu totalmente o sítio catalítico contra a oxidação por H2O2, apesar de acarretar em menores taxas de inibição por esse composto. A exposição da enzima a H2O2 elevou a sua inibição. A FAc de rim bovino apresentou grande susceptibilidade ao H2O2. Os compostos DTT e GSH provocaram inibição de sua atividade, assim como observado para a FAc de mamona. A combinação de DTT ou GSH a H2O2 não restabeleceu a atividade enzimática, sugerindo que há diferenças no processo de oxidação por esse composto entre as duas FAcs utilizadas nesse trabalho. A exposição da FAc de rim bovino a DTT ou GSH não foi eficaz na proteção do sítio catalítico, e a exposição dessa enzima a H2O2 elevou a inibição da atividade enzimática. Nossos resultados sugerem que as FAcs, independentemente da presença de carboidrato na estrutura, sofreram oxidação de maneiras diferentes, apresentando comportamentos bastante divergentes entre si. Hipotetizamos que a Fac de mamona atingiu um estado reversível de oxidação, sendo que a cisteína tornou-se ácido sulfênico. Já a FAc de rim bovino deve ter alcançado um estado irreversível de oxidação, com a cisteína na forma de ácido sulfínico ou sulfônico / Abstract: Currently, much has been discovered about the mechanisms of control of cell growth and coordination, especially in eukaryotic cells. Among such mechanisms, the balance between the phosphorylation and dephosphorylation of proteins is the basis for the control of various biological events. The phosphatases are hydrolases using as substrate phosphate monoesters, and are widely distributed in nature. The acid phosphatases are enzymes that have better activity under acidic conditions. The goal of this work is to study the effect of hydrogen peroxide (H2O2) in two acid phosphatases which contains cysteine in their active site. Therefore, castor bean and bovine kidney acid phosphatases, both previously obtained in our laboratory, were used in this study. The first is a glycoprotein, whereas the second contains no carbohydrate in its structure. Enzyme assays using the synthetic substrate p-nitrophenylphosphate (pNPP) were performed at different incubation conditions and exposure of the enzymes. The castor bean acid phosphatase showed great resistance to H2O2, a fact that was independent of the presence of carbohydrate in their structure. Assays in the presence of dithiothreitol (DTT) or reduced glutathione (GSH) caused enzyme inhibition, but the combination of the GSH or DTT and H2O2 was able to completely recover enzyme activity. Exposure of castor bean acid phosphatase to DTT or GSH did not fully protect the catalytic site against oxidation by H2O2, although result in lower rates of inhibition by this compound. Exposure of the enzyme to H2O2 increased its inhibition. Acid phosphatase from bovine kidney showed high susceptibility to H2O2. The compounds DTT and GSH caused inhibition of its activity, as was observed for castor bean acid phosphatase. For this enzyme, the combination of DTT or GSH to H2O2 not reestablished enzyme activity, suggesting that there are differences in the oxidation process for this compound between the two phosphatases used in this work. Exposure of bovine kidney acid phosphatase to DTT or GSH was not effective in protecting the catalytic site, and the exposure of the enzyme to H2O2 increased the inhibition of enzyme activity. Our results suggest that the acid phosphatases, regardless of the presence of carbohydrate in the structure, underwent oxidation by different ways, presenting quite divergent behaviors. We hypothesize that the castor bean acid phosphatase reached a state of reversible oxidation, and cysteine became sulfenic acid. As for acid phosphatase bovine kidney must have reached a state of irreversible oxidation with cysteine as sulfonic or sulfinic acid / Mestrado / Bioquimica / Mestra em Biologia Funcional e Molecular

Thesis: Ph. D., Joint Program in Chemical Oceanography (Massachusetts Institute of Technology, Department of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2015. / Cataloged from PDF version of thesis. / Includes bibliographical references. / Tracing the evolution of Earth's redox history is one of the great challenges of geobiology and geochemistry. The accumulation of photosynthetically derived oxygen transformed the redox state of Earth's surface environments, setting the stage for the subsequent evolution of complex life. However, the timing of the advent of oxygenic photosynthesis relative to the Great Oxidation Event (GOE; -2.4 Ga) is poorly constrained. After the deep ocean became oxygenated in the early Phanerozoic, hydrogen sulfide, which is toxic to most aerobes, may have transiently accumulated in the marine photic zone (i.e. photic zone euxinia; PZE) during mass extinctions and oceanic anoxic events. Here, the molecular fossil evidence for oxygenic photosynthesis and eukaryotes is reevaluated, where the results imply that currently existing lipid biomarkers are contaminants. Next, the stratigraphic distribution of green and purple sulfur bacteria biomarkers through geologic time is evaluated to test whether these compounds reflect a water column sulfide signal, which is implicit in their utility as PZE paleoredox proxies. Results from a modern case study underscore the need to consider allochthonous and microbial mat sources and the role of basin restriction as alternative explanations for these biomarkers in the geologic record, in addition to an autochthonous planktonic source. / by Katherine L. French. / Ph. D.

Indiana University-Purdue University Indianapolis (IUPUI) / DNA double strand breaks (DSB) are among the most lethal forms of DNA damage and can occur as a result of ionizing radiation (IR), radiomimetic agents, endogenous DNA-damaging agents, etc. If left unrepaired DSB’s can cause cell death, chromosome translocation and carcinogenesis. In humans, DSB are repaired predominantly by the non-homologous end joining (NHEJ) pathway. Ku, a heterodimer consisting of Ku70 and Ku80, functions in the recognition step of this pathway through binding DNA termini. Ku recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs) to create the full DNA-PK heterotrimer. Formation of DNA-PK results in autophosphorylation as well as phosphorylation of downstream proteins of the NHEJ pathway. Previous work shows that the extreme C-terminus of Ku80 stimulates the kinase activity of DNA-PKcs, and Ku DNA binding is regulated as a function of redox via stimulation of a conformational change when oxidized resulting in a decrease in DNA binding activity. To further understand these methods of regulation of Ku and DNA-PK, a pair of mutants has been constructed; one consisting of full length Ku70 and truncated Ku80 (Ku70/80ΔC) lacking 182 C-terminal amino acids. The removal of these amino acids was shown to have little to no effect on the proteins expression, stability or DNA binding, as determined by SDS-PAGE, western blot analysis and electrophoretic mobility shift assay (EMSA). When oxidized Ku70/80ΔC showed a decrease in DNA binding similar to that seen in wild type, however when re-reduced the mutant did not recover to the same extent as wild type. A second mutant was constructed, containing amino acids 590-732 of Ku80 (Ku80CTR), to further understand the mechanism by which Ku80 C-terminus interacts with the rest of the Ku heterodimer. Possible protein-protein interactions were evaluated by Ni-NTA affinity, gel filtration chromatography, fluorescence polarization and two forms of protein-protein cross-linking. Ni-NTA agarose affinity, and gel filtration chromatography failed to reveal an interaction in the presence or absence of DNA. However, photo-induced cross-linking of unmodified proteins (PICUP) as well as EDC cross-linking demonstrated an interaction which was not affected by DNA. The work presented here demonstrates that the interaction between Ku80CTR and Ku is rather weak, but it does exist and plays a relatively large role in the NHEJ pathway.

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The inevitable aging process can be partially attributed to the accumulation of oxidative damage that results from the action of free radicals. Methionine sulfoxide reductases (Msr) are a class of enzymes that repair oxidized methionine residues. The two known forms of Msr are MsrA and MsrB which reduce the R- and S- enantiomers of methionine sulfoxide, respectively. Our lab has created the first genetic animal model that is fully deficient for any Msr activity. Previously our lab showed that these animals exhibit a 20 hour delay in development of the third instar larvae (unpublished data). My studies have further shown that the prolonged third-instar stage is due to a reduced growth rate associated with slower food intake and a markedly slower motility. These Msr-deficient animals also exhibit decreased egg-laying that can be attributed to a lack of female receptivity to mating. / Includes bibliography. / Thesis (M.S.)--Florida Atlantic University, 2016. / FAU Electronic Theses and Dissertations Collection