L’adénocarcinome canalaire du pancréas (PDAC) est un des cancers les plus agressifs avec un taux de survie à 5 ans de moins de 5 %. Une des raisons est l’absence de traitement thérapeutique efficace. Des efforts afin d’identifier de nouvelles cibles pour le traitement du PDAC sont donc nécessaires. Il a été démontré que la dénervation du pancréas régule la progression des PDAC dans des modèles murins. De plus, on a rapporté que les axones du système nerveux périphérique (SNP) innervent les tumeurs pancréatiques, mais l'identité précise des fibres infiltrant la tumeur est inconnue.Ici, nous avons caractérisé le remodelage des principales divisions du SNP, y compris les systèmes autonomes et sensoriels, dans des modèles murins qui récapitulent la maladie humaine. Nous avons aussi commencé à caractériser l'innervation des PDAC dans des échantillons humains. Nous avons observé une augmentation de la densité des fibres sympathiques positives pour la tyrosine hydroxylase (TH) dans les lésions pré-tumorales du pancréas, alors qu'une forte densité de fibres sensorielles positives pour le peptide lié au gène de la calcitonine (CGRP) a été observée dans les PDAC. Fait intéressant, alors que dans tissus normaux les axones sympathiques et sensoriels sont principalement associés aux vaisseaux sanguins, ils sont majoritairement isolés dans les lésions pré-tumorales et les PDAC. Ces données suggèrent que la plasticité axonale survient aux stades précoces du développement tumoral pour les fibres sympathiques et à un stade plus tardif pour les fibres sensorielles. Ce travail suggère de nouvelles cibles potentielles pour le traitement des PDAC. / Pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal cancers with 5-year survival rate of less than 5%. One reason to explain this poor outcome is that there has been no effective therapeutic treatment for PDAC patients. Thus, efforts to identify novel targets for PDAC treatment are required. Denervation of the pancreas has been shown to regulate PDAC progression in murine models. In addition, axons of the peripheral nervous system (PNS) have been reported to innervate pancreatic tumors, but the precise identity of the tumor-infiltrating fibers is unknown. Here we characterized the remodeling of the main divisions of the PNS, including autonomic and sensory systems, in mouse models, which recapitulate the human disease. We also started to characterize the innervation of human PDAC samples. We observed an increased density of tyrosine hydroxylase (TH)-positive sympathetic fibers in pre-tumoral lesions of the pancreas, while a high density of calcitonin gene-related peptide (CGRP)-positive sensory fibers was seen within PDAC. Interestingly, whereas in the normal tissues TH+ and CGRP+ axons were mostly associated to blood vessels, they were mainly isolated in lesions and PDAC. These data suggest that axonal plasticity occurs at the early stage of tumor development for sympathetic fibers and at the late stage for sensory fibers. This work suggests potential novel targets for the treatment of PDAC.

O adenocarcinoma pancreático ductal representa a quarta causa de morte por câncer, visto que as taxas de incidência são praticamente idênticas às taxas de mortalidade, o que justifica a natureza altamente agressiva do tumor. Em uma análise preliminar realizada por nosso grupo, avaliou-se a expressão do gene homeobox HOXB7 nas linhagens celulares MIA PaCa-2, BxPC-3 e Capan-1, bem como em tecidos pancreáticos normais, detectando-se o aumento significativo da expressão nas células derivadas de adenocarcinoma pancreático. Alterações na expressão de HOXB7 foram relatadas na formação e progressão de outros cânceres. Nessas condições, este estudo visou não somente avaliar a expressão deste gene em uma série de 29 adenocarcinomas pancreáticos ductais, 6 tecidos metastáticos e 24 tecidos peritumorais, comparando-os aos tecidos normais, mas também averiguar o efeito de sua inibição sobre o perfil de expressão das células citadas. A análise da expressão gênica demonstrou a hiperregulação do transcrito do gene HOXB7 nos tecidos tumorais, corroborando os resultados observados nas linhagens celulares MIA PaCa-2, BxPC-3 e Capan-1. A inibição realizada com RNA de interferência promoveu a modulação de diferentes processos biológicos nas três linhagens celulares pesquisadas, bem como a indução de apoptose e diminuição da proliferação das células MIA PaCa-2. Nesse contexto, o homeobox neste estudo investigado representa mais um componente associado à ampla rede de moléculas envolvidas na caracterização do câncer pancreático e um promissor alvo para futuras terapias biológicas / The pancreatic ductal adenocarcinoma is the fourth leading cause of cancer death, whereas the incidence rates are practically identical to mortality rates, which explains the highly aggressive tumor. In a preliminary analysis performed by our group, we evaluated the expression of the homeobox gene HOXB7 in cell lineages MIA PaCa-2, BxPC-3 and Capan-1, as well as in normal pancreatic tissue, detecting a significant increase in expression in cells derived from pancreatic adenocarcinoma. Changes in expression of HOXB7 were reported in the formation and progression of other cancers. Under these conditions, this study aimed to not only evaluate the expression of this gene in a series of 29 pancreatic ductal adenocarcinomas, 6 metastatic tissues and 24 peritumoral tissues, comparing them to normal tissues, but also examined the effect of its inhibition on the expression profile of the cells mentioned. The analysis of gene expression showed the hyper-regulation of HOXB7 gene transcript in the tumor tissues, confirming the results observed in cell lineages MIA PaCa-2, BxPC-3 and Capan-1. The inhibition performed with RNA interference promoted the modulation of different biological processes in all three cell lines investigated, as well as the induction of apoptosis and decreased in proliferation of the MIA PaCa-2 cells. In this context, the homeobox investigated in this study represents another component associated with the extensive network of molecules involved in the characterization of pancreatic cancer and a promising target for future biologic therapies

RNAs não codificadores longos (lncRNAs) compõem uma fração significativa do transcriptoma. Alterações na expressão de lncRNAs já foram observadas em vários cânceres humanos, mas ainda não foram exploradas no adenocarcinoma pancreático ductal (PDAC), uma doença devastadora e agressiva para a qual faltam métodos para diagnóstico precoce e tratamentos efetivos. Utilizando uma plataforma de microarranjo de cDNA com sondas para 984 lncRNAs e 2371 mRNAs, o presente estudo identificou conjuntos de lncRNAs expressos em 38 amostras clínicas pancreáticas. O enriquecimento de (i) elementos regulatórios associados às regiões promotoras (H3K4me3); (ii) possíveis inícios de transcrição (CAGE-tags); (iii) presença de elementos conservados sugere que ao menos uma fração desses RNAs seja originada a partir de unidades transcricionais independentes, reguladas e possivelmente funcionais. Foram identificadas assinaturas de expressão gênica compostas por mRNA e lncRNAs associadas ao tumor primário e à metástase pancreática. A assinatura gIenica associada à metástase apresentou enriquecimento RNAs intrônicos de loci gênicos associados à via MAPK quinase. O aumento de expressão dos transcritos intrônicos dos loci PPP3CB, MAP3K14 e DAPK1 foi confirmado por qPCR em metástases. Em conjunto, este trabalho aponta para a importância de lncRNAs intrônicos no PDAC e para a necessidade de estudos mais aprofundados para uma melhor compreensão do papel dessa classe de transcritos na biologia da doença. / Long noncoding RNAs (lncRNAs) compose a significant fraction of transcriptome. Altered expression of lncRNAs has been observed in diverse human cancers, but has not being investigated in pancreatic ductal adenocarcinoma (PDAC), a devastating and aggressive disease that lack early diagnosis methods and effective treatments. Using a cDNA microarray platform with probes interrogating 984 lncRNAs and 2371 mRNA, the present study identified subsets of lncRNAs expressed in 38 pancreatic clinical samples. Enrichment of (i) regulatory elements associated to promoter region (H3K4me3); (ii) putative transcription start site (CAGEtags) and (iii) conserved elements, suggest that at least a fraction of these RNAs could be independent transcriptional unit, regulated, an possibly functional. Gene expression signatures comprised of mRNAs and lncRNAs and associated to primary or metastatic tumors were found. A gene signature associated to metastasis was enriched in intronic ncRNAs mapping to gene loci associated to the MAPK pathway. Over expression of intronic RNAs from PPP3CB, MAP3K14 and DAPK1 was confirmed by qPCR in metastatic samples. Taken together, this study points to the importance of intronic lncRNAs in PDAC and for the need to study this class of ncRNAs in greater detail to better understand its role in the biology of PDAC.

O adenocarcinoma pancreático (PDAC) é uma neoplasia de difícil diagnóstico precoce e cujo tratamento não tem apresentado avanços expressivos desde a última década. As tecnologias de sequenciamento de nova geração (next generation sequencing - NGS) podem trazer importantes avanços para a busca de novos marcadores para diagnóstico de PDACs, podendo também contribuir para o desenvolvimento de terapias individualizadas. Bancos de dados são ferramentas poderosas para integração, padronização e armazenamento de grandes volumes de informação. O objetivo do presente estudo foi modelar e implementar um banco de dados relacional (CaRDIGAn - Cancer Relational Database for Integration and Genomic Analysis) que integra dados disponíveis publicamente, provenientes de experimentos de NGS de amostras de diferentes tipos histopatológicos de PDAC, com dados gerados por nosso grupo no IQ-USP, facilitando a comparação entre os mesmos. A funcionalidade do CaRDIGAn foi demonstrada através da recuperação de dados clínicos e dados de expressão gênica de pacientes a partir de listas de genes candidatos, associados com mutação no oncogene KRAS ou diferencialmente expressos em tumores identificados em dados de RNAseq gerados em nosso grupo. Os dados recuperados foram utilizados para a análise de curvas de sobrevida que resultou na identificação de 11 genes com potencial prognóstico no câncer de pâncreas, ilustrando o potencial da ferramenta para facilitar a análise, organização e priorização de novos alvos biomarcadores para o diagnóstico molecular do PDAC. / Pancreatic Ductal Adenocarcinoma (PDAC) is a type of cancer difficult to diagnose early on and treatment has not improved over the last decade. Next Generation Sequencing (NGS) technology may contribute to discover new biomarkers, develop diagnose strategies and personalised therapy applications. Databases are powerfull tools for data integration, normalization and storage of large data volumes. The main objective of this study was the design and implementation of a relational database to integrate publicly available data of NGS experiments of PDAC pacients with data generated in by our group at IQ-USP, alowing comparisson between both data sources. The database was called CaRDIGAn (Cancer Relational Database for Integration and Genomic Analysis) and its funcionalities were tested by retrieving clinical and expression data of public data of genes differencially expressed genes in our samples or genes associated with KRAS mutation. The output of those queries were used to fit survival curves of patients, which led to the identification of 11 genes potencially usefull for PDAC prognosis. Thus, CaRDIGAn is a tool for data storage and analysis, with promissing applications to identification and priorization of new biomarkers for molecular diagnosis in PDAC.

L’ADKP est la 5e cause de décès par cancer dans le monde occidental, et il est estimé qu’il constituera la 2e cause de mort par cancer d’ici à 2030. Le taux de survie à 5 ans est inférieur à 4%, et la médiane de survie est d’environ 6 mois. Ce pronostic sombre est dû à une pathologie asymptomatique dans les phases précoces du développement tumoral, résultant en un diagnostic tardif. Les tumeurs primaires sont constituées de structures épithéliales néoplasiques entourées par un stroma abondant empêchant l’accès des chimiothérapies aux cellules tumorales. La compréhension des mécanismes d’initiation et de progression tumorale est donc primordiale pour développer de nouvelles stratégies visant à la détection et à la prise en charge thérapeutique optimale des patients atteints d’ADKP. Le TGFbeta est une cytokine assurant de nombreuses fonctions physiologiques comme la régulation de l’immunité, la cicatrisation, le développement ou encore l’angiogenèse. Les résultats présentés dans ce manuscrit mettent en évidence que l’activation de la voie de signalisation TGFbeta perturbe la différenciation des cellules acineuses au cours du développement, et perturbe l’identité acineuse lorsqu’elle est activée dans le pancréas chez l’adulte. L’induction en parallèle de l’apoptose des cellules acineuses et d’une métaplasie acino-canalaire (ou ADM) mène à la disparition quasi-totale du tissu acineux au profit de structures canalaires typiques d’un pancréas en régénération. Lorsque l’oncogène KRASG12D est exprimé en parallèle dans le tissu pancréatique chez l’adulte, ce tissu canalaire régénératif est mis à profit par KRAS pour le développement précoce de lésions pré-néoplasiques. Mes travaux au sein de l’équipe du Dr. Laurent BARTHOLIN permettent donc de démontrer in vivo un nouveau rôle du TGFbeta dans la carcinogénèse pancréatique / PDA is the 5th cause of cancer related death in the western countries, and is estimated to move the second rank by 2020. The 5-year survival rate is less than 4%, and the median survival is around 6 months. The poor prognostic of this tumor is due to asymptomatic early phases of the disease, resulting in a late diagnosis. Primary tumors are composed by ductal neoplastic lesions embedded into a highly abundant stroma that prevents the access of chemotherapeutic drugs to the tumor cells. Thus, understanding tumor initiation and progression mechanisms is needed to develop new strategies aiming at detecting and taking care of patients in the most optimal manner. TGFbeta is a cytokine playing several physiological functions such as immunity regulation, wound healing, development or angiogenesis. Results presented in this manuscript demonstrate that activation of TGFbeta signaling disturb acinar cell differentiation during development, and disrupts acinar cell identity when activated in the adult pancreas. The simultaneous induction of acinar cell apoptosis and ADM leads to the massive loss of acinar cells and the emergence of ductal structures typical of pancreas regeneration. When the KRASG12D oncogene is expressed in combination with the activation of TGFbeta signaling, these regenerative duct structures are harnessed by KRASG12D to develop early neoplastic lesions. Thus, my work in Dr. Laurent BARTHOLIN’s team demonstrates a new function of TGFbeta in pancreatic carcinogenesis in vivo

<div> <p>Pancreatic ductal adenocarcinoma (PDAC) is a poorly immune responsive, treatment refractory disease, representing the fourth leading cause of cancer deaths in the United States. A lack of significant improvements in patient prognoses over the last few decades highlights the necessity for a more basic understanding of how PDAC develops and progresses. To this end, the research outlined here investigates the contributions of SOX9 and PAR1 in PDAC initiation and tumor immune evasion, respectively. </p> <p>SOX9 is a developmental transcription factor important for proper pancreas development that is restricted to only a small subset of cells in the adult organ. However, SOX9 is aberrantly expressed in precancerous lesions of the pancreas and throughout PDAC development. Using genetically engineered mouse models we demonstrated that PDAC precursor lesions cannot form in the absence of SOX9 and conversely formed at an accelerated rate when SOX9 was ectopically expressed. Surprisingly deletion of SOX9 in primary mouse PDAC cell lines had no impact on tumor growth in subcutaneous allograft experiments, indicating that although SOX9 expression is necessary for PDAC initiation, it is dispensable in many cases for tumor maintenance and growth. Research investigating the transcriptional changes induced by SOX9 prior to lesion formation is ongoing to identify additional downstream factors critical for disease initiation. </p> <p>Previous research has shown that PDAC tumors frequently display low levels of immune infiltration, which is a major limitation for the use of immune-based therapeutics and is generally an unfavorable prognostic factor. We show that in primary mouse tumor cells ablation of the thrombin receptor PAR1 caused a significant increase in the infiltration of tumor targeting CD8a⁺T cells which in turn were found to eliminate PAR1 knockout tumors. When PAR1^KO and PAR1 expressing PDAC tumor cells were co-injected into wild type mice, cells lacking PAR1 were preferentially targeted and eliminated by the immune system, indicating that PAR1 provides cell autonomous protection during an active anti-tumor adaptive immune response. Furthermore, we identified a previously underappreciated association between PAR1-mediated expression of <i>Csf2</i> and <i>Ptgs2</i>, and PDAC tumor immune evasion. Together these findings provide novel insights into the mechanisms and drivers of PDAC initiation and immune evasion.</p> </div> <br>

No description available.

Le TGFβ (Transforming Growth Factor-β) est une cytokine ayant de nombreusesfonctions au cours de la vie embryonnaire et de la vie adulte. Au cours de la cancérogenèse,le TGFβ a un effet anti-tumoral sur les épithelia sains ou immortalisés, et acquière despropriétés facilitant la progression tumorale des épithélia transformés. Afin d’étudier cettedualité fonctionnelle du TGFβ, nous avons choisi comme modèle d’étude l’adénocarcinomedu pancréas, une tumeur de très mauvais pronostic, qui représente la cinquième cause demortalité par cancer dans les pays développés. Les cancers du pancréas, dans leur grandemajorité, présentent des mutations activatrices de l’oncogène Kras, sécrètent de grandequantités de TGFβ et présentent des mutations inactivatrices au niveau de gènes régulateursde la voie du TGFβ. L’objectif général de mes travaux de thèse était de comprendre le rôle duTGFβ au cours des différentes phases de la cancérogenèse pancréatique grâce à l'utilisationde souris génétiquement modifiées. Tout d’abord, nous avons montré que l’activation cibléede la voie du TGFβ dans le pancréas coopérait avec l’oncogène Kras afin d’induire unepancréatite, une inflammation du pancréas favorisant le développement tumoral. Nous avonségalement démontré le rôle suppresseur de tumeur de TIF1γ, une protéine dont la fonction estméconnue mais qui a été proposée pour réguler la voie du TGFβ. En conclusion, mes travauxont tout d’abord contribué à une meilleure compréhension des mécanismes à l’origine del’inflammation du pancréas. Ceci ouvre de nouvelles perspectives de traitement visant àinactiver le programme pro-inflammatoire du TGFβ et ainsi d’inhiber l’effet pro-tumoral dela pancréatite. D’autre part, mes travaux ont permis de mettre en évidence une nouvelle voiesuppresseur de tumeur dans le pancréas. La caractérisation des programmes anti-tumorauxmis en jeu par TIF1γ devrait permettre de définir de nouvelles stratégies thérapeutiques. / The TGFβ (Transforming Growth Factor-β) belongs to a wide family of cytokinesinvolved in numerous functions during embryogenesis and adult life. During tumorigenesis,TGFβ is considered as a double-edge-sword preventing tumor initiation in normal orimmortalized epithelia but, in contrast, facilitating tumor progression in transformedepithelia. We have studied this dual functionality of TGFβ in Pancreatic DuctalAdenocarcinoma (PDAC), a devastating disease representing the fifth leading-cause ofrelated-cancer death in industrialized countries. Most of pancreatic cancers present activatingKras oncogene mutations, high expression level of secreted TGFβ and inactivating mutationsof affecting major mediators of the TGFβ signaling. The main objective of my thesis was tounderstand the role of TGFβ during pancreatic tumorigenesis using genetically modifiedmouse models, then mimicking the human disease. First, we showed that targeted activationof TGFβ signaling in the pancreas could cooperate with Kras oncogene to induce pancreatitis,an inflammation of the pancreas described as a tumor-promoting environment. Second, wedemonstrated the tumor suppressor role of TIF1γ, a protein recently involved in the TGFβsignaling. In conclusion, this work has contributed to a better understanding of the molecularmechanisms responsible for pancreatitis initiation. Our results open new therapeuticsperspectives leading to the inhibition of the TGFβ-mediated program of thus inhibiting prooncogeniceffect of pancreatitis. Moreover, we defined a new tumor suppressor pathwayactivated in the pancreas. The molecular characterization of programs engaged by TIF1γcould allow defining new therapeutic strategies.

Ces dernières années, un nouveau composant de l'environnement des tumeurs (ET) a été mis en évidence: les projections des neurones du système nerveux. En effet, les tumeurs sont infiltrées par des axones, ce qui pourrait réguler la progression du cancer.Le cancer du pancréas fait partie des cancers les plus mortels. Les traitements thérapeutiques actuels qui ciblent ce cancer ne sont pas efficaces. Il est donc important de mieux comprendre les différentes composantes de l'ET de ce cancer afin d’identifier de nouvelles cibles thérapeutiques. Nous proposons de décrire l’innervation des tumeurs pancréatiques ce qui est le point de départ pour mieux comprendre l’importance de cette composante de l'ET. Les objectifs ont été d’analyser en 3D les réseaux d'axones qui innervent le pancréas sain et cancéreux, ainsi que leurs relations avec d'autres types cellulaires de l'ET (vaisseaux sanguins (VS)).Pour cela, nous avons utilisé une méthode d'imagerie 3D de pancréas entiers, rendus transparents, qui proviennent de modèles génétiques de souris qui développent des cancers du pancréas similaires à ceux de l'homme. Nous avons observé que les réseaux d'axones sont plus denses et plus complexes dans les régions cancéreuses du pancréas par rapport aux régions saines. Alors que dans les tissus sains les axones sont associés aux VS, ils ne le sont plus dans les régions cancéreuses. Nous avons de plus identifié des groupes morphologiques de réseaux d'axones qui permettent de discriminer une région saine d'une région cancéreuse.L’analyse de la structure en 3D de ces réseaux d'axones pourrait donc représenter une donnée prédictive et pronostique de l'état d'avancé clinique de la maladie. / Cancers are diseases in which cancer cells interact with a complex tumor environment (TE). In recent years, a new component of TE has been highlighted: neuronal projections of the nervous system. Indeed, the axons of neurons innervate the tumors, which could regulate cancer progression.Pancreatic cancer is among the most deadly cancers. Indeed, the current therapeutic treatments that target this cancer are not effective. It is therefore important to better understand the different components of the TE of this cancer in order to identify new potential therapeutic targets.In this thesis, we propose to describe the innervation of pancreatic tumors which is the starting point to better understand the importance of this component of the TE. The objectives were to visualize and analyze in 3D the networks of axons that innervate the healthy and cancerous pancreas, as well as their relations with other cell types of the TE (blood vessels (BV)).For this, we used a method of 3D imaging of whole pancreas, made transparent, which come from genetic models of mice that develop pancreatic cancer similar to that of humans.We observed that axon networks are denser and more complex in cancerous regions of the pancreas compared to healthy regions. Moreover, while in healthy tissue, axons are associated with BV, they are no longer in cancerous areas.We also identified morphological groups of axon networks that discriminate a healthy region from a cancerous region.The analysis of the 3D structure of these axon networks could thus represent a predictive and prognostic value for the progression of the disease.

L'adenocarcinoma ductal de pàncrees és un càncer molt agressiu que actualment representa la quarta causa de mort per càncer als països occidentals. Les teràpies clàssiques, basades en la resecció quirúrgica, la radioteràpia i el tractament amb quimioteràpics com la gemcitabina, no són efectives en la gran majoria del pacients. En aquests darrers anys s'està estudiant l'aplicació de la teràpia gènica com a teràpia alternativa o adjuvant per al tractament d'aquesta neoplàsia. Una aproximació important és la que es basa en la transferència del gen de la timidina quinasa del virus Herpes simplex tipus 1 (TK) i l'administració de la pro-droga ganciclovir (GCV). Un dels atractius que presenta aquest sistema TK/GCV és que disposa d'un mecanisme amplificador de la mort cel·lular, que va més enllà d'eliminar la cèl·lula tumoral modificada genèticament amb el gen TK i que es coneix com l'efecte adjacent. S'ha proposat, que aquest efecte podria ser degut al trànsit dels metabòlits tòxics del GCV a través dels canals intercel·lulars que formen les unions gap.En aquesta tesi hem realitzat una caracterització de l'expressió de les molécules constitutives de les unions gap, les connexines, en l'adenocarcinoma de pàncrees; i hem estudiat el seu paper en l'eficàcia de dues estratègies terapèutiques basades en l'administració de compostos anàlegs de nucleòsids: el sistema suïcida TK/GCV i el quimioteràpic gemcitabina. S'ha estudiat també la possible contribució de l'E-cadherina, element clau de les unions adherents epitelials, en l'efecte citotòxic d'aquestes teràpies i amb especial èmfasi en el sistema TK/GCV.