To increase capacity for monitoring and surveillance of tick-borne diseases, publicly available tick distribution and climate change datasets are required to create accurate predictive distribution models. It is difficult, however, to assess model accuracy and utility when using incomplete datasets.  The more recent development of comprehensive tick databases for Europe and availability of climate change scenarios from multiple IPCC Assessment Reports allows for improved modeling efforts. Multiple tick datasets were combined and three climate change projections were compared by predicting current and future distributions of Ixodes ricinus ticks in Europe using the MaxEnt species distribution model. Overall, much of Europe contains suitable habitat for the Ixodes ricinus tick, both now and under future climate change projections.  Contraction of habitable areas is predicted to occur at lower latitudes and altitudes, while expansion is predicted to occur at higher altitudes in mountainous regions and the higher latitudes, primarily in northern Scandinavia.

Parasitische Würmer gehören mit über 3,5 Milliarden Betroffenen zu den weltweit verbreitetesten Infektionskrankheiten. Der Erfolg dieser Parasiten beruht auf ihren ausgefeilten Mechanismen mit denen sie das Immunsystem ihrer Wirte manipulieren. Interessanter Weise gehen Wurminfektionen mit einer geringeren Wahrscheinlichkeit an Allergien zu erkranken einher. Wie genau die Parasiten das Immunsystem manipulieren ist weitgehend unbekannt. Um diese Mechanismen besser studieren zu können, wurde im Rahmen dieser Arbeit versucht RNA interference (RNAi), anhand des Modellmoleküls Tropomyosin zu etablieren. Wie sich am Beispiel des Strongyliden Heligmosomoides polygyrus bakeri zeigte, ist RNAi als Manipulationsmethode für Nematoden nicht oder nur in geringem Maße geeignet. Dies lässt sich auf das Fehlen von Aufnahme- und Verbreitungsmechanismen für Doppelstrang-RNA zurückführen. Desweiteren wurden die Auswirkungen von rekombinantem Tropomyosin der Filarie Acanthocheilonema viteae (rAv-TMY) auf die Entstehung allergischer Atemwegserkrankungen im Mausmodell untersucht. Eine viermalige Behandlung mit rAv-TMY in einem Zeitraum von vier Wochen führte zu verringerten entzündlichen Reaktionen in den Atemwegen. Die Analyse immunologischer Parameter ergab, dass rAv-TMY signifikant den Einstrom von Entzündungszellen in die Atemwege reduziert, allem voran den Einstrom von Eosinophilen. Dies lässt sich durch die verringerte Ausschüttung an IL-5, Eotaxin und MCP-5 zurückführen. Zudem wurde die Bildung von antigenspezifischen IgE verringert während sich die Produktion blockierender IgG1 Antikörper erhöhte. Diese Arbeit belegt somit die anti-allergischen Eigenschaften von rAv-TMY. Damit stellt rAv-TMY ein interessantes Kandidatenmolekül zur Behandlung allergischer Reaktionen dar. Desweiteren kann der Vergleich von allergenem, nicht allergenem und modulatorischem Tropomyosin wichtige Informationen über die allgemeinen Eigenschaften von Allergenen und ihrer molekularen Struktur geben. / Parasitic worms are among the world''s most prevalent infectious diseases with more than 3.5 billion. The success of these parasites is based on their sophisticated ways to manipulate the immune system of their hosts. Interestingly, worm infections abate the risk to develop allergic disorders. How exactly parasitic worms modulate the immune system is so far largely unknown. In order to be able to investigate parasite induced modulation, this work aimed to establish RNA interference (RNAi), a method of genetic manipulation, using tropomyosin as target gene. As shown for the example of Heligmosomoides polygyrus RNAi is not or only to a small extent useful as method to genetically manipulate nematodes. This can be explained with the lack of uptake and spreading mechanisms for double stranded RNA. Furthermore, this work examined the impact of the recombinant muscle protein tropomyosin of Acanthocheilonema viteae (rAv-TMY) on the course of a rodent model of allergic airway inflammation. A four-time treatment with rAv-TMY over a period of four weeks resulted in decreased inflammatory responses in the airways. The analysis of immunological parameters showed that rAv-TMY significantly reduces the influx of inflammatory cells into the airways, especially eosinophils. The reduced eosinophil influx can be attributed to the decreased expression of IL-5, eotaxin and MCP-5 in the airways. In addition, the formation of antigen-specific IgE was impaired whereas the production of the blocking antibody IgG1 was increased. These results demonstrate the anti-allergic properties of rAv-TMY. For this reason rAv-TMY becomes an interesting model molecule for the treatment of allergic diseases. Furthermore, the comparison of allergenic, non-allergenic and modulatory tropomyosin might put some light on the nature of allergens and their molecular patterns.

Understanding of carbon cycling in coniferous forests that represent a large carbon sink is crucial for our understanding of natural processes under global climate change. Recognition of fungi as fundamental decomposers can contribute to this understanding. Fungi are able to decompose numbers of substrates and possess a variety of enzymes to do so In this study I present litter decomposing fungi in mountain spruce forest from national park Šumava. The aim of my thesis was to follow succession and community changes of fungi from the early stages of decomposition of Picea abies needles until degradation of organic matter in the organic horizon of the soil. This aim was accomplished partly by recording the extracellular enzyme production of fungi in different stages of decomposition from needles attached to the twigs of a fallen tree to a litter material in later stages of decomposition on the soil surface. In addition to testing of fungi on their natural substrata - needle litter, enzyme activities were also measured in laboratory agar cultures, which allow comparison of diverse fungi with different origins. Enzyme activities were aimed at enzymes decomposing cellulose and compounds found in litter. Although ecology of endophytic and saprothrophic fungi suggest differences in enzyme production, these...

AD is regarded as a sustainable technology that could assist the UK Government meet internationally agreed GHG emission targets by 2050. However, the mature status of the technology is based on expensive systems that rely on high energy feedstock to be profitable. Meanwhile, the natural biodegradation of cow slurry is a recognised contributor to climate change despite having a relatively low CH4 potential because of the large volumes produced. Economic mixing is essential to the cost-effectiveness of farm AD but techniques applied are not always appropriate as slurry is a shear thinning thixotropic Herschel-Bulkley fluid and therefore challenging to mix. The apparent viscosity of slurry and the shear stress induced was most influenced by solids content (exponential change) followed by temperature (linear). Most shear thinning occurred before a rising shear rate of 20s-1 was achieved with the fluid acting near-Newtonian above. Thixotropic recovery occurred within 1 hour of resting. Rheological values were also much higher than previously reported. Highest CH4 production occurred in the first 10 days of the batch process using a range of mixing regimes with different shear rates and rest periods. During fed-batch operations, changing shear rate had a minimal effect on CH4 production using a 30-day HRT whereas shorter rest periods increased production. Specific CH4 production rate was highest when feeding and mixing coincided. However, when HRT was reduced (OLR increased) the CH4 produced by all mixed regimes significantly increased with highest values being achieved using high intensity mixing rested for short periods. Lower HRTs also requires smaller digesters. Parasitic mixing energy invariably had the most influence on net energy production. Signs of instability were evident after 20 days using the low HRT. Significant microbial adaptation was also observed as the experiments progressed. The research outcomes demonstrate that mixing regime and HRT can be managed to maximise net energy production whilst reducing capital expenditure.

Ces travaux de recherche portent sur la problématique CEM (Compatibilité Electromagnétique) en électronique de puissance. Cette étude s'intéresse particulièrement à la modélisation HF (haute fréquence) des convertisseurs d'énergie dans le but d'étudier la propagation des perturbations conduites vers le réseau avec ou sans l’utilisation du RSIL (Réseau Stabilisateur d'Impédance de Ligne). Une première partie présente les outils de modélisation des sources de perturbation dans les convertisseurs statiques.La seconde partie est consacrée à la modélisation HF d'un système d'entraînement à vitesse variable. L'onduleur de tension triphasé est représenté par trois générateurs équivalents afin de reconstituer le découpage des tensions de sortie. Un modèle HF du câble blindé de 4 conducteurs tenant compte de la dissymétrie est ensuite proposé. Les résultats de simulation ont été validés par des relevés expérimentaux. La comparaison montre qu'il est possible de modéliser correctement le comportement HF du dispositif jusqu'à 20MHz.Une troisième partie porte sur la propagation des perturbations conduites vers le réseau sans RSIL. Il a fallu pour cela déterminer et modéliser l'impédance du réseau. L'influence du pont redresseur à diodes sur la propagation des perturbations de mode commun a ensuite été étudiée. Les résultats de simulation montrent que l'impact de ces perturbations sur la tension réseau est prépondérant lorsque le pont redresseur est à l'état bloqué. Les résultats expérimentaux ont permis de valider cette étude. Ce travail se termine par une étude préliminaire sur l'association de deux convertisseurs connectés localement à une même source d'énergie / These research works focus on EMC (Electromagnetic Compatibility) in power electronics systems. Specifically, the study focuses on HF (high frequency) modeling of the power converters in order to study the conducted emissions toward the power grids with or without the use of an LISN (Line Impedance Stabilisation Network). The first part presents the modeling tools of the electromagnetic emissions sources in power converters.The second part describes the HF modeling method of an adjustable speed drive (ASD) that will be used to estimate the conducted emissions. In a first part, a behavioural model of PWM inverter is proposed as an EMI noise source. Then, a model of the shielded 4-wire energy cable that taking into account of the dissymmetry structure is proposed and validated in the frequency domain for two different lengths. The comparison of measurement and simulation results of conducted emissions (with LISN) shows the good compromise between the simulation duration and accuracy of the results.A third part is dedicated to the propagation of conducted emissions toward the power grid without using a LISN. The first stage consists in proposing a model impedance of the network impedance. The influence of the bridge rectifier diodes on the propagation paths of common mode disturbances has been studied in the second step. The simulation results show that the impact of these disturbances on the network voltage is more important when the bridge rectifier is normally off-state. The experimental results have validated this study. This work concludes with a preliminary study on the association of two converters connected locally to a single energy source

The dusky grouper Epinephelus marginatus (Lowe 1834), is a protogynous sequential hermaphrodite and is considered to be one of the most important fish species in the Mediterranean Sea. It is a K-strategist, being slow growing and late maturing, and this, coupled with its reproductive biology and relatively sedentary behaviour, has made it extremely sensitive to overexploitation, leading it to be classified by the IUCN as an endangered fish species. Wild dusky grouper have suffered from disease outbreaks in the past decade, leading to mass mortalities across the Mediterranean Sea, including Libyan coastal waters. These mortalities have mostly been attributed to Nodavirus infections. In Europe and Brazil, efforts are in place to culture this fish for commercial grow-out and stock enhancement programmes. In Libya, the dusky grouper is consumed regularly and is considered a prime-eating fish. Its importance for the Libyan internal market, as well as its potential for export, makes it an ideal candidate for future Libyan aquaculture activities. Given the scarce literature regarding the dusky grouper in Libya, this study aimed first to assess dusky grouper fisheries, spawning seasons and to identify the main threats that the fishing sector poses for wild stocks. Second this study aimed to determine the health status of wild dusky grouper offered at a local fish market in the capital Tripoli, in order to identify pathogens, pathologies or other health issues that might pose a hazard to cultured populations but also to remaining wild dusky grouper stocks. To achieve these aims, twelve field surveys spanning the period of 2013-2015 were conducted. From these surveys, it was established that the dusky grouper is captured throughout the year, including the spawning season. Fish sizes offered for sale ranged between 20-92 cm total length (TL), with the fish being sold from local fishing grounds around Tripoli, but also from as far as Benghazi, 1300 km to the east of Tripoli. The dusky grouper is principally caught in artisanal fisheries and by spearfishing, with approximately 300 spear-fishermen serving one particular fish market in Tripoli that was a focus in this study, and with dusky grouper being one of their main targets. Over the period of the survey, 267 landed dusky grouper were inspected for visible lesions prior to sampling. A total of 50 dusky grouper with sizes ranging from 27- 66 cm TL including the gonads from a further five fish measuring 66-92 cm TL that were sampled separately and examined to assess the stage of sexual maturity and to look for the presence of parasitic infections mainly affecting the gills, skin and gonads. The spawning season was found to extend from May to early September, with females ranging between 39-68 cm TL, males measuring 57-92 cm TL, and transient fish measuring 58-68 cm TL. From otolith readings of 8 fish, the youngest fish was a 3 year old juvenile of 28 cm TL and the oldest was an 8-9 year old 56 cm TL female. Whilst the highest prevalence of parasitic infection was found to be monogenean infection of the gills, with 100% prevalence, followed by gnathiid isopods infecting the oral cavity with 92% prevalence, it was the nematode Philometra sp. infecting post-spawning ovaries at 52% prevalence, that gave the highest apparent pathological impact. Necrosis potentially attributed to Philometra sp. in one particular ovary, was at a level likely to have caused complete parasitic castration, while others showed varying levels of probable functional reduction. The pathologies described need further investigation, especially in relation to possible synergies between Philometra sp. and bacteria in causing the necrosis. From the 267 inspected dusky grouper, 55 fish ranging in size from 42-92 cm TL were observed to be affected by external skin lesions of unknown aetiology. Twenty-six of these fish were sampled, having lesions at various stages of severity, and 5 further unaffected fish were used for histological assessment of the skin as negative controls. Histopathologically, the lesions comprised a multifocal, unilateral or bilateral dermatitis, involving the epidermis, superficial dermis and scale pockets, and sometimes, in severe cases, the hypodermis. Severe lesions had marked epidermal spongiosis progressing to ulceration. Healing was observed in some fish. Bacteria and fungi could be isolated from severe lesions, although they were not seen histopathologically in early-stage lesions. By contrast, metazoan parasite eggs were observed in the dermis and epidermis of some fish with mild and moderate dermatitis. Unidentified gravid digenean trematodes, carrying similar eggs, were also seen within the blood vessels of the deep and superficial dermis. The newly described condition was termed dusky grouper dermatitis (DGD). DGD’s geographical distribution along the Libyan coastline was investigated using a novel application of the social media network Facebook. Using Facebook, it was possible to document skin lesions of dusky grouper in Libyan waters from images attached to the entries of spear-fishermen. Thirty two Facebook accounts and 8 Facebook groups posting from 23 Libyan coastal cities provided a retrospective observational dataset comprising a total of 382 images of dusky grouper caught by spearfishing from December 2011-December 2015. Skin lesions were observable on 57 / 362 fish, for which images were of sufficient quality for analysis, giving a minimal prevalence for lesions of 15.75%. Only dusky grouper exceeding an estimated 40 cm total length exhibited lesions. The ability to collect useful data about the occurrence and geographical distribution of pathological conditions affecting wild fish using social media networks, demonstrates their potential utility as a tool to support epidemiological studies and monitor the health of populations of aquatic animals. The gravid digenean trematode described from mild lesions of five fish was identified using reconstruction through histological sectioning as belonging to the Family Aporocotylidae Odhner, 1912. This is the first description of a blood fluke from the dusky grouper, as well as from dermal blood vessels. The parasite was relatively long; the longest section of the parasite that could be measured was 1500 µm and 20-80 µm in width, while the total length of the parasite was estimated at 1500-2000 µm. Minute tegumental spines, possibly covering only a few parts of the parasite, were seen from some cross-sections. The parasite had one post-testicular ovary, which might overlap the testis, a pre-ovarian ascending uterus, and a post-ovarian descending uterus. It also possessed an oesophagus surrounded by oesophageal glandular cells and a pre-ovarian and pre-testicular extension of the vitelline cells, mostly at the level of the ascending uterus. The parasite was observed to be intra-vascular, the uterine lumen varies in size to accommodate between 1-7 eggs. The uterine eggs were embryonated and observed to span several stages of maturation. Eggs were also found in the dermal blood vessels, in the dermis, and in the epidermis, with the latter appearing to provide a potential route of egress of eggs into the environment. The extra-uterine eggs were 23.5 to 37.52 µm long and contained a ciliated miracidium. The eggs seemed to elicit a mixed inflammatory reaction, with degranulation of eosinophilic granular cells attached to the external surface of some of the eggs within the blood vessels but also the dermis. From observations made in the current study, this parasite appears to be a new species, most closely allied to none of the currently described Aporocotylidae genera. / In summary, the present study has demonstrated that the dusky grouper is extensively fished in Libya without discrimination to sizes and season, by both artisanal and spearfishing, with the latter as one of the main fishing methods, posing treats to the spawning potential and conservation of dusky grouper in Libya. The philometrid infecting the ovaries has a potential to reduce fecundity or to result in parasitic castration of wild broodstock. Gill-infecting monogeneans might represent a hazard for all stages of dusky grouper production. Dusky grouper dermatitis is a skin lesion, although there are no indications that infections may result in mortalities. Under culture conditions, however, this might change due to increase bacterial loads, which might lead to secondary bacterial infection. The presence of skin lesions would undoubtedly reduce the market value of whole fish. These findings are important for existing wild stocks, and for future plans regarding the aquaculture of dusky grouper. Future studies need to focus on the pathology of DGD, describing the disease process and aetiology using laboratory techniques such as TEM and virology as well as using morphology and molecular-based tools to describe the blood fluke and to determine their potential role in the initiation the disease. The novel approach to disease surveillance using social media Facebook posts could be further expanded by attracting citizen scientists, for future research assessing disease in wild fish, for sightings of mortality events and/or the appearance of disease outbreaks, or, for mapping marine mammal stranding’s and/or turtle nesting activity.

Cette thèse est consacrée à la caractérisation et la modélisation du transport électronique dans des matériaux et dispositifs SOI avancés pour la microélectronique. Tous les matériaux innovants étudiés(ex: SOI fortement dopé, plaques obtenues par collage etc.) et les dispositifs SOI sont des solutions possibles aux défis technologiques liés à la réduction de taille et à l'intégration. Dans ce contexte,l'extraction des paramètres électriques clés, comme la mobilité, la tension de seuil et les courants de fuite est importante. Tout d'abord, la caractérisation classique pseudo-MOSFET a été étendue aux plaques SOI fortement dopées et un modèle adapté pour l'extraction de paramètres a été proposé. Nous avons également développé une méthode électrique pour estimer la qualité de l'interface de collage pour des plaquettes métalliques. Nous avons montré l'effet bipolaire parasite dans des MOSFET SOI totalement désertés. Il est induit par l’effet tunnel bande-à-bande et peut être entièrement supprimé par une polarisation arrière. Sur cette base, une nouvelle méthode a été développée pour extraire le gain bipolaire. Enfin, nous avons étudié l'effet de couplage dans le FinFET SOI double grille, en mode d’inversion. Un modèle analytique a été proposé et a été ensuite adapté aux FinFETs sans jonction(junctionless). Nous avons mis au point un modèle compact pour le profil des porteurs et des techniques d’extraction de paramètres. / This thesis is dedicated to the electrical characterization and transport modeling in advanced SOImaterials and devices for ultimate micro-nano-electronics. SOI technology is an efficient solution tothe technical challenges facing further downscaling and integration. Our goal was to developappropriate characterization methods and determine the key parameters. Firstly, the conventionalpseudo-MOSFET characterization was extended to heavily-doped SOI wafers and an adapted modelfor parameters extraction was proposed. We developed a nondestructive electrical method to estimatethe quality of bonding interface in metal-bonded wafers for 3D integration. In ultra-thin fully-depletedSOI MOSFETs, we evidenced the parasitic bipolar effect induced by band-to-band tunneling, andproposed new methods to extract the bipolar gain. We investigated multiple-gate transistors byfocusing on the coupling effect in inversion-mode vertical double-gate SOI FinFETs. An analyticalmodel was proposed and subsequently adapted to the full depletion region of junctionless SOI FinFETs.We also proposed a compact model of carrier profile and adequate parameter extraction techniques forjunctionless nanowires.

Rhizophagus grandis is one of the rare examples of totally specific predators: it only preys upon the bark beetle Dendroctonus micans in its native range (Europe and Asia). In the course of coevolution in such predator-prey systems, prey are selected for avoidance and resistance mechanisms against predators. Previous laboratory trials suggested that R. grandis could lay more eggs in presence of exotic prey species with an ecology similar to that of D. micans, but which could not evolve resistances against this predator, such as the North American parasitic bark beetles D. punctatus and D. valens. The specificity of the association R. grandis-D. micans is thought to depend on chemical signals (kairomones) used by the predator to find a gallery of its prey and to adjust its oviposition to the number of prey larvae available inside. However, the exact nature of the chemical signals regulating R. grandis’ oviposition is still unknown. While these signals seem specific in nature, stimulation of the predator’s oviposition by exotic prey species suggests that specificity may be constrained by geography. Unlike most bark beetles, which kill living trees or feed on dying trees, D. micans completes its development on healthy trees as a true parasite. This niche is highly defended by tree toxicants (terpenes among others) to which both D. micans and R. grandis are resistant. Insects possess their own detoxification processes, but they may also rely on symbiotic microorganisms (bacteria and fungi) to contend with the specific constraints of their niche. In comparison to other bark beetles, microbial communities of parasitic bark beetles are yet poorly known, as in the case of D. micans and D. punctatus. Apart from detoxification, insect symbionts may provide nutritional supplementation, protection against pathogens, or components of the chemical communication, which affect the hosts as well as partners of the tritrophic relationship tree-bark beetle-natural enemies. The system R. grandis-D. micans is a unique opportunity to study several aspects of this coevolution which are poorly understood to date. The objectives of this thesis were:- (1) the comparison of the oviposition performances of R. grandis on the specific prey D. micans, and on the exotic prey D. punctatus and D. valens, in order to emphasize possible prey resistance mechanisms; - (2) the identification of the chemical signals regulating R. grandis’ oviposition, and the evaluation of their role in the specificity of the association with D. micans, in presence of the exotic prey D. punctatus and D. valens; - (3) the characterization of the bacterial and fungal communities associated with non-aggressive populations of the bark beetles D. micans, D. punctatus and D. valens, and investigating how these microbial symbionts may affect bark beetle hosts in respect of their ecology as well as the tritrophic relationship tree-bark beetle-natural enemies. Our results show that R. grandis laid equivalent numbers of eggs with the native prey D. micans and with the exotic prey D. punctatus and D. valens, which could illustrate that R. grandis’ specificity is constrained by geography but which does not emphasize possible prey resistance mechanisms against the long-standing predator. We identified robust candidates to the stimulation and inhibition of R. grandis’ oviposition which should be confirmed in bioassays. Finally, we report that the bacterial and fungal communities of non-aggressive populations of D. micans, D. punctatus and D. valens are mainly composed of widespread environmental Enterobacteria and yeasts, and we discuss the various ways they may influence bark beetle hosts in respect of their life histories including the attacked trees and their natural enemies. Overall, this thesis illustrates the need to encompass all levels of complexity, from prey symbionts and semiochemicals to predators, to study systems like R. grandis-D. micans. / Rhizophagus grandis est un des rares exemples de prédateurs totalement spécifiques :présent en Europe et en Asie, il se nourrit exclusivement du scolyte Dendroctonus micans. Dans de telles associations, la coévolution prédateur-proie mène à la sélection de mécanismes d’évitement ou de résistance chez la proie, contre le prédateur. De précédentes observations en laboratoire ont suggéré que R. grandis pouvait pondre davantage d’œufs en présence de proies exotiques d’écologie comparable à celle de D. micans, mais qui n’auraient pu développer de résistance à l’encontre de ce prédateur, à l’instar des scolytes parasitiques nord-américains D. punctatus et D. valens. Il semble que la spécificité de l’association R. grandis-D. micans repose sur des signaux chimiques (kairomones) qui permettent au prédateur de repérer les galeries de sa proie et d’y ajuster le nombre d’œufs déposé à la quantité de larves de proies disponible. Néanmoins, on ignore encore la nature exacte des signaux régulant l’oviposition de R. grandis. Le fait que l’oviposition soit stimulée par des proies exotiques indique que la spécificité de cette association pourrait être limitée par des barrières géographiques. Contrairement à la plupart des scolytes qui tue des arbres ou s’attaque à des arbres mourants, D. micans se développe intégralement sur des arbres en bonne santé, en véritable parasite. Cette niche est fortement défendue par les composés toxiques de l’arbre (en particulier les terpènes), auxquels à la fois D. micans et R. grandis sont résistants. Certains insectes possèdent leurs propres processus de détoxification, mais ils peuvent également bénéficier de l’aide de microorganismes symbiotiques (bactéries et champignons). En comparaison avec les autres scolytes, les communautés microbiennes associées aux scolytes parasitiques est très peu documentée, comme dans le cas de D. micans et D. punctatus. En dehors de la détoxification, les symbiotes d’insectes peuvent contribuer à leur nutrition, les protéger contre des pathogènes, ou intervenir dans la communication chimique, ce qui affecte leurs hôtes comme les autres acteurs de la relation tritrophique arbre-scolyte-ennemi naturel. L’association R. grandis-D. micans est une opportunité unique d’étudier des aspects méconnus de la coévolution. Les objectifs de cette thèse étaient de :- (1) comparer le nombre d’œufs pondu par R. grandis sur sa proie spécifique, D. micans, et sur les proies exotiques D. punctatus et D. valens, afin de mettre en évidence de possibles résistances ;- (2) identifier les signaux chimiques qui régulent l’oviposition de R. grandis, et évaluer leur rôle dans la spécificité de l’association avec D. micans, en présence des proies exotiques D. punctatus et D. valens ;- (3) caractériser les communautés bactérienne et fongique associées aux populations parasitiques des scolytes D. micans, D. punctatus et D. valens, et investiguer comment ces microorganismes symbiotiques peuvent influencer leurs hôtes, selon leurs contraintes écologiques, ainsi que leurs ennemis naturels et arbres-hôtes. Nos résultats révèlent une oviposition équivalente de R. grandis en présence de la proie native D. micans et des proies exotiques D. punctatus et D. valens, ce qui illustre que la spécificité de cette association pourrait être limitée par des barrières géographiques mais ne met pas en évidence de possibles résistances à l’encontre du prédateur de longue date. Nous avons identifié des candidats robustes à la stimulation et à l’inhibition de la ponte de R. grandis, et leur rôle devrait être confirmé par des bioessais. Enfin, nous rapportons que la communauté microbienne associée aux populations parasitiques des scolytes D. micans, D. punctatus et D. valens est principalement constituée d’Entérobactéries et de levures répandues, et nous discutons des différentes façons dont ces symbiotes peuvent affecter leurs hôtes et autres acteurs de la relation tritrophique arbre-scolyte-ennemi naturel, selon leurs écologies respectives. Dans son ensemble, cette thèse souligne l’importance de considérer tous les niveaux de complexité biologique, des microorganismes associés aux proies jusqu’aux prédateurs, afin d’étudier des systèmes comme R. grandis-D. micans. / Doctorat en Sciences / info:eu-repo/semantics/nonPublished

Made available in DSpace on 2014-12-17T15:36:33Z (GMT). No. of bitstreams: 1 JoseTAXL_Parte 1.pdf: 5097640 bytes, checksum: 87d585113062c0aafaeaea6c8b1525d6 (MD5) Previous issue date: 2008-07-04 / The present study investigated the reproductive dynamics and parasitism of four species of marine fishes: serra Spanish mackerel, Scomberomorus brasiliensis, Atlantic leatherjacks, Oligoplites saurus and O. palometa,, and Atlantic bumper, C. chrysurus, during the period of August, 2005 to July, 2007, in the coastal waters of Southwest Atlantic Ocean, Brazil. The collected fish samples were measured, weighed, dissected, the gonads were weighed and examined to separate the sex. The gonadosomatic index (GSI), fecundity, type of spawning, the breeding season, the macro and microscopic characterization of the gonads were determined. The ectoparasites from the branchial chambers and bucal cavity of the fish were collected, measured, weighed and identified. The sex ratio of the study fish species were approximately 1M:1F, however, there was a predominance of males of O. palometa (3M:2F). The GSI of fishes varied according to their reproductive cycle and the stage of gonadal maturation. The highest values of GSI and the spawning period coincided with the rainy period of the region. The females presented total spawning and the fecundity was positively correlated with the weight of the ovary and the body. Four stages of development of the gonads immature, maturing, mature and spent were identified macroscopically and histological analyses of ovaries revealed the different phases of oocyte development. Three species of isopod parasites were identified in the study fishes: Livoneca redmmanni, Rocinela signata and Cimothoa spinipalpa. The first two species occurred in the branchial cavities of C. chrysurus and S. brasiliensis. The isopod C.spinipalpa (a new species) was registered for the first time in the bucal cavity of O. saurus and O. palometa. The parasitic isopods preferred the branchial chambers and the bucal cavity of the host fishes as these were protected microhabitats. The isopods parasitized the immature, maturing and mature fishes. The prevalence of infection of isopods in the hosts varied from 16 to 21%, though in O. palometa it was 60%. In the rainy period the highest isopod parasitic occurrence was registered, however, this did not prejudice the normal reproductive cycle of the host fish. / O presente trabalho investigou a din?mica reprodutiva e parasit?ria de quatro esp?cies de peixes marinhos: serra, Scomberomorus brasiliensis, tibiros, Oligoplites saurus e O. palometa e palombeta, Chloroscombrus chrysurus, durante os messes de agosto de 2005 a julho de 2007, nas ?guas costeiras do Sudoeste do Oceano Atl?ntico, Brasil. Os peixes foram medidos, pesados, dissecados, as g?nadas pesadas e examinadas para separa??o do sexo. Foram avaliados o ?ndice gonadossom?tica (IGS), fecundidade, tipo e ?poca de desova e a caracteriza??o macro e microsc?pica do desenvolvimento das g?nadas dos peixes. Os ectoparasitos da c?mara branquial e cavidade bucal dos peixes foram coletados, medidos, pesados e identificados. A propor??o sexual dos peixes estudados foram aproximadamente 1M:1F, enquanto ocorreu um predom?nio de machos de O. palometa (3:2). Os peixes apresentaram IGS variando de acordo com seu ciclo reprodutivo e seu est?dio de matura??o gonadal. Os maiores valores de IGS e a ?poca reprodutiva coincidiram com per?odo das chuvas da regi?o. As f?meas apresentaram desova total e fecundidade com correla??o positiva para o peso das g?nadas e do corpo. Quatro est?dios de desenvolvimento das g?nadas foram identificados macroscopicamente: imaturo, em matura??o, maduros e esgotados, e os estudos microsc?picos mostraram o desenvolvimento ovocit?rio dentro de cada est?dio. Tr?s esp?cies de parasitos isopodos foram identificadas nas quatro esp?cies de peixes: Livoneca redmmanni, Rocinela signata e Cimothoa spinipalpa. As primeiras duas esp?cies ocorreram na cavidade branquial de C. chrysurus e S. brasiliensis. Parasitismo por isopodo C.spinipalpa, (uma esp?cie nova) foi registrado na cavidade bucal de O. saurus e O. palometa. O micro-h?bitat preferido pelos parasitos is?podos foram ? c?mara branquial e a cavidade bucal do hospedeiro, ?reas mais protegidas. Os isopodos parasitaram os peixes nos est?dios imaturo, em matura??o e maduros. A preval?ncia de infec??o de isopodos nos hospedeiros variou de 16 a 21%, enquanto que em O. palometa foi de 60%. No per?odo das chuvas foi registrada a maior ocorr?ncia de parasitismo por isopodos, porem, o parasitismo n?o prejudicou o ciclo reprodutivo normal dos hospedeiros.

La banane plantain (Musa paradisiaca) est l’aliment de base de millions de personnes dans le monde et sa culture génère des revenus permanents pour un grand nombre d’agriculteurs, dans des plantations de taille petite ou moyenne. Comme dans d’autres régions tropicales, la culture du plantain en Guadeloupe et en Haïti est soumise à de fortes contraintes parasitaires aussi bien telluriques (i.e. du sol : nématodes phytoparasites et charançon du bananier) qu’aériennes (Cercosporiose noire notamment). Les moyens de lutte conventionnels reposent sur l’usage de produits de synthèse dont les effets néfastes sur l’environnement (sols, eaux, animaux) comme sur la santé humaine ne sont plus supportables. Il est donc urgent de réfléchir à des solutions agro-écologiques permettant de rétablir les équilibres biologiques, de maintenir une bonne qualité des sols et une production optimale dans les systèmes de culture plantains. C’est le but de ce travail de thèse qui couple la réalisation d’un diagnostic agro-écologique dans des parcelles paysannes, et le test d’alternatives agro-écologiques en milieu semi-contrôlé. Pour ce faire, une typologie des systèmes de culture plantains a été réalisée à l’issue d’une enquête agro-environnementale dans les deux zones d’étude. Elle a permis de sélectionner 23 parcelles en Guadeloupe et 12 en Haïti dans lesquelles un diagnostic agro-écologique a été conduit. Sur la base de ce diagnostic et de la recherche d’alternatives agro-écologiques à l’usage des produits chimiques, une expérimentation au champ a été mise en place en Guadeloupe en station de recherche, permettant le test de trois pratiques culturales innovantes pour le plantain (seules et combinées), à savoir : i) l’introduction d’une plante de service Paspalum notatum pour la gestion des adventices et la réduction de l’utilisation d’herbicides ; ii) l’apport de vermicompost pour le contrôle des nématodes phytoparasites inféodés au bananier plantain et la fertilisation de celui-ci ; iii) l’utilisation de plants sains PIF (Plants Issus de Fragments de tiges) indemnes de nématodes et de larves de charançon du bananier. La typologie des systèmes de culture plantains révèle que : i) en Guadeloupe les précédents : jachère, ananas et banane plantain sont prédominants avec un niveau d’intensification faible (apports d’intrants chimiques faibles et peu fréquents) ou élevé (apports d’intrants chimiques élevés et plus fréquents) ; ii) en Haïti, les précédents : jachère, banane plantain et manioc prédominent avec un niveau d’intensification faible ou nul (apport d’intrants inexistant). Les résultats du diagnostic agro-écologique montrent que, i) lorsque le niveau d’intensification est faible, les bananeraies plantains pérennes et le précédent-ananas permettent de maintenir une bonne qualité du sol et une bonne régulation des parasites telluriques ; ii) lorsque le niveau d’intensification est fort, les populations d’ingénieurs du sol diminuent drastiquement, alors que le cortège parasitaire tellurique augmente sans que cela n’affecte l’obtention de bons niveaux de rendement instantannés (parcelles précédées d’ananas ou d’une jachère principalement) ; iii) en absence totale de fertilisation, il résulte une diminution de l’activité biologique du sol mais aussi du rendement du plantain, exacerbé par le choix des précédents-culturaux (manioc ou banane plantain) en lien avec les contraintes pédoclimatiques et la maladie des raies noires (Cercosporiose noire) causée par Mycosphaerella fijiensis, notamment au sein des parcelles Haïtiennes ; iv) la succession plantain/plantain est la plus pénalisante vis-à-vis de la culture du plantain, car quelque soit le niveau d’intensification, le rendement reste relativement faible, en lien avec une dégradation de l’état sanitaire, comparativement aux autres précédents. / Plantain (Musa paradisiaca) is the staple food of millions of people worldwide and its cropping generates ongoing revenues for many farmers who are planting small or medium size areas. As in other tropical regions, plantain cultivation in Guadeloupe and Haiti is under heavy parasitic constraints terrestrial (plant-parasitic nematodes and banana weevil) as well as aerial (black Sigatoka in particular). Conventional means of control based on the use of synthetic products which adverse effects on the environment (soil, water, animals ...) as on human health are not bearable any more. It is thus urgent to think about agroecological solutions allowing to restore the biological balances, to maintain good soil quality and optimal plantain cropping systems.This is the ultimate goal of this thesis which couples the realization of an agroecological diagnosis in peasants’ plots, and the test of agroecological alternatives in semi-controlled conditions. To do this, a typology of plantain cropping systems was carried out from an agrienvironmental survey in the two study areas. It allowed to select 23 plots in Guadeloupe and 12 in Haiti in which an agroecological diagnosis was implemented. Based on this diagnosis and the research of agroecological alternatives to the use of chemicals, a field experiment was set up in Guadeloupe, in an experimental station allowing the test of three innovative practices for plantain cultivation (alone and combined), namely : i) the introduction of a cover-crop Paspalum notatum for weed control while reducing the use of herbicides ; ii) the input of worms’ compost to control plant-parasitic nematodes specific to plantain and to fertilize it ; iii) the use of healthy “PIF” plants (plants issued from stem fragments) free from telluric pests (nematodes and weevil’s larvaes).The typology of plantains cropping systems shows: i) in Guadeloupe the previous crops are: fallow pineapple and plantain predominate with a low level of intensification (low and infrequent chemical inputs) or high (high and frequent chemical inputs); ii) in Haiti, the previous crops are: fallow, plantain and cassava predominate with a low level or no intensification at all (no inputs). The results of the agroecological analysis show that : i) when the level of intensification is low, perennial plantain and pineapple as previous crops help maintaining a good soil quality and a good regulation of the telluric pests ; ii) when the level of intensification is strong, the soil engineers drastically reduce, while the density of telluric parasites increases without affecting good levels of instantaneous yields (plots where the previous crop is pineapple or mostly fallow) ; iii) when the fertilization is totally missing, it decreases the biological activity of the soil furthermore the plantain yields, exacerbated by the choice of the previous crop (cassava or plantain), in connection with soils and climate constraints and the black Sigatoka caused by Mycosphaerella fijiensis, especially in the Haitian plots ; iv) the crop succession plantain/plantain is the most critical regarding the plantain’s cropping, because whatever the level of intensification, the yields remain relatively low in connection with a degradation of the health state, compared to other previous crops.The driving of an experiment in a research station shows that on the scale of one year, the three tested innovative practices allow maintaining a good soils quality. Healthy plants "PIF" have a better health state (absence of plant parasitic nematodes in the roots) which helps a significant increase of the yields. Cover-crop P. notatum helps the weeds and the soil pests control and favors the improvement of soil biological activity and plantain yields. Worms’ compost contributes to the maintenance of a better soils quality while allowing the regulation of the populations of plant-parasitic nematodes of the plantains.