Thesis (M.S.)--Oregon State University, 2009. / Printout. Includes bibliographical references (leaves 59-67). Also available on the World Wide Web.

Natural and anthropogenic environmental variables pressures exert fitness pressures on our flora and vegetation and necessitate an understanding of the mechanisms of plant responses to those pressures. Overgrazing and desertification are examples of the stressors that affect plant community composition, on both large and small scales. In order to investigate the plant community response to these stressors it has been shown that it is more practical and informative to group plant species according to their functional characteristics into functional types than attempting to predict plant response solely based on previous range distribution data. The present study involved a survey of the dunefield vegetation of several privately owned farms as well as a communal farm in the southern Kalahari. The farms were subjectively chosen to represent a gradient from underutilized to overutilized. Plant community surveys were conducted on the farms and the dominant plant species were sampled and researched for selected functional traits to explore possible relationships between traits and grazing pressure. Ordination techniques were used to identify plant functional grazing response types. The identification of plant functional types through easy measurable traits will be a great aid in modelling and longterm environmental monitoring approaches. Of the three dunefield habitats, the dune street habitat was identified as the most vulnerable to overgrazing. A reduction in cumulative cover and an increase in bare surface cover indicated increased grazing pressure in the dune crest habitat. In the dune streets shrub cover and annual grass cover increased when veld was overgrazed. Functional analysis of 112 Kalahari plant species for a set of 47 plant traits showed that species clustering were strongly related to vegetative characteristics. The emerging clusters were strongly associated with major life forms, which comprised phanerophytes of different size classes, geophytes and herbaceous perennials, as well as herbaceous annuals. These clusters were identifiable even with the inclusion of reproductive traits. Selected vegetative traits are good indicators of plant response to land-use intensity since these traits lend competitive advantages to plant persistence under utilisation pressure. Plant height, spinescence, specific leaf area, leaf dry matter content, leaf sclerophylly and stem density were found to be examples of such traits. Phanerophyte and chamaephyte dominated functional groups were mostly associated with lower range condition and hemicryptophyte dominated groups with higher range condition, whereas herbaceous therophyte dominated groups did not show any specific association. / Dissertation (MSc)--University of Pretoria, 2011. / Plant Science / unrestricted

In 2006, a baseline survey for the UNEP/GEF-IAS Project was conducted in BFR to assess the status of IAS in the area. Findings indicated that extensive forest parts had severe S. spectabilis encroachment which appeared to interfere with the normal functioning and productivity of the forest. This study was motivated by the magnitude of S. spectabilis invasion in BFR, the level of public and government concern about the invasion, and the magnitude of the IAS problem across East Africa. This study was thus undertaken to address a specific need of the research and capacity building components of the UNEP/GEF-IAS Project. The study1 was carried out to assess the impacts of S. spectabilis invasion on the productivity of BFR and the socio-economic implications on the livelihoods of the dependent stakeholders (local resident population, timber suppliers and the tourism sector). The study used descriptive statistics to assess the levels of awareness of S. spectabilis invasion, perceptions and knowledge of the conservation values of BFR, knowledge on the benefits and costs of living with S. spectabilis and impacts of S. spectabilis on the flow of quantities and revenues from the benefits it generates. The impact on financial profitability and efficiency of timber firms was assessed using Gross margin analysis (GMA) and financial efficiency ratio analysis respectively. The impact on the population structure of chimpanzees was studied using mean differentials and focused group discussions. Results indicate that the level of awareness about S. spectabilis invasion and the knowledge of the conservation values of BFR were high among all the three stakeholder groups. GMA revealed that S. spectabilis invasion increases variable costs in timber production thus reducing profit margins and financial efficiency of timber firms. Alteration of habitat environment occasioned by S. spectabilis invasion was advanced, though with uncertainty, as a possible reason for the difference in chimpanzee numbers between the infested and non infested forest conditions. Like other IAS, S. spectabilis was found to have both benefits and costs though the distribution of the same differs. S. spectabilis can be considered a net benefit to the local dependent communities whereas it may be a net loss to both the timber and tourism sectors. Conflict of interest in S. spectabilis management is discussed and possible solutions suggested. It was recommended that the threat of invasive species should be tackled through a multisectoral approach. / Dissertation (MSc)--University of Pretoria, 2009. / Agricultural Economics, Extension and Rural Development / unrestricted

Thesis (MSc. (Plant production)) -- University of Limpopo, 2016 / Seriphium plumosum is a declared indicator of bush encroachment, and poses a serious threat to the management of sustainable utilization in all grasslands. The successful invasiveness of S. plumosum is attributed to its competitive ability and high allelopathic potential. A trial was established at the University of Limpopo to investigate the interference between S. plumosum and four plant species, namely: Eragrostis curvula, E. tef, Panicum maximum and Lactuca sativa. Plant material of S. plumosum were collected and used to make infusions which were used on the receiver species. The infusion inhibited the germination of all the receiver species, and it was highly significant (P ≤ 0.01), compared to control treatments where no inhibition occurred. All receiver species were sensitive to roots and shoots infusions, but the effect of shoots infusion differed significantly (P ≤ 0.01) from those of roots infusion. All receiver species were sensitive to both summer and winter collected materials, but plant material collected in winter had a bigger effect (P ≤ 0.01) than plant material from summer. All receiver species were sensitive to both fresh and stored plant material, but inhibition effects were not statistically significantly different (P ≥ 0.05). All receiver species were sensitive to both fresh and stored soils collected in infested areas, but effects were not significantly different (P ≥ 0.05), while the effects of infested and un-infested soils differed significantly (P ≤ 0.01). All receiver species were sensitive to soils collected during summer and winter. Where infested soils were concerned, all receiver species were sensitive to infested soils, compared to control treatments where no effects occurred. Where stored infested soils were concerned, all receiver species were sensitive to both fresh and stored infested soils. It was concluded that both plant material of S. plumosum and soils from areas encroached by S. plumosum have a negative effect on seed germination of the four receiver species. Should a farmer control this species by means of cutting, it should be quickly removed to allow the gass to recover. The farmer must not expect quick recovery of grasses due to the presence of allelopathic substances in the soil. / Agri-seta

Although pharmaceutical industries have produced a number of new antibiotics in the last three decades, resistance to these drugs by infectious microorganisms has increased. For a long period of time, plants have been a valuable source of natural products for maintaining human and animal health. The use of plant compounds for pharmaceutical purposes has gradually increased worldwide. This is because there are many bioactive constituents in plants which hinder the growth or kill microbes. Plants could be considered a potential gold mine for therapeutic compounds for the development of new drugs. In this study, sixteen South African plant species were selected based on their antibacterial activity after a wide screening of leaf extracts of tree species undertaken in the Phytomedicine Programme, University of Pretoria. Literature search excluded eleven plants because of the work already performed on their antibacterial activities, while Pavetta schumaniana was found toxic and thus not included in the screening. The remaining four plants namely; Buxis natalensis, Macaranga capensis, Dracaena mannii and Garcinia livingstonei were screened for antibacterial activity by determining the minimum inhibitory concentrations (MIC) against 4 nosocomial bacterial pathogens Staphylococcus aureus, Enterococcus faecalis, Escherichia coli and Pseudomonas aeruginosa, and also by using bioautography. The extracts of Macaranga capensis, Garcinia livingstonei, Diospyros rotundifolia and Dichrostachys cinerea had good antibacterial activity with MIC values of 0.03, 0.04, 0.06 and 0.08 mg/ml against different pathogens. The average MIC values of the plant extracts against all the tested pathogens ranged from 0.23-1.77 mg/ml. S. aureus was the most susceptible bacterial pathogen with average MIC of 0.36 . The extract of Diospyros rotundifolia was the most active with an average MIC against all the organisms of 0.23 mg/ml. The extracts of Buxus natalensis, Dracaena mannii, and Pittosporum viridiflorum, Acacia sieberiana, Erythrina lattissima, Cassine papillosa and Pavetta schumanniana had lower antibacterial activity. G. livingstonei was selected for further work on the basis of its good activity. The bulk acetone extract of Garcinia livingstonei (20g) was subjected to solvent-solvent fractionation which yielded seven fractions. Only the chloroform and ethyl acetate fractions showed good bioactivity in the microdilution assay and bioautography. Column chromatography was used to isolate two bioactive biflavonoids from the ethyl acetate fraction. The structures of the two compounds were elucidated using nuclear magnetic resonance (NMR) spectroscopy, and were identified as amentoflavone (1) and 4′ monomethoxyamentoflavone (2). These two compounds have been previously isolated from plants that belong to the Clusiaceae. The two compounds were isolated in sufficient quantity with a percentage yield of 0.45% for amentoflavone and 0.55% for 4′ monomethoxyamentoflavone from 20 g crude acetone extract. The antibacterial activity was determined against four nosocomial bacterial pathogens (Escherichia coli, Staphylococcus aureus, Enterococcus faecalis and Pseudomonas aeruginosa). The MIC values ranged from 8-100 μg/ml. Except for Staphylococcus aureus which showed resistance to amentoflavone at >100 μg/ml. All the other tested organisms were sensitive to both compounds. It has long been recognized that naturally occurring substances in higher plants have antioxidant activity. Based on this, the antioxidant activities of the two isolated compounds were tested using the Trolox assay. The two flavones had good antioxidant activity. Amentoflavone had a Trolox equivalent antioxidant capacity (TEAC) of 0.9. The second compound 4′ monomethoxyamentoflavone had a TEAC value of 2.2 which is more than double the antioxidant activity of Trolox, a vitamin E analogue. To assess the safety of the two compounds on cell systems, cytotoxicity was determined using a tetrazolium based colorimetric assay (MTT assay) using Vero monkey kidney cells. The compounds indicated little to low toxicity against the cell line with cytotoxic concentration (CC50) of 386 μg/ml and >600 μg/ml for compound 1 and 2 respectively. Berberine (used as the control toxic substance) had a CC50 of 170 μg/ml. The Ames genotoxicity assay is used to assess the mutagenic potential of drugs, extracts and phytocompounds. The compounds isolated in this study were assayed for genotoxicity using the Salmonella typhimurium TA98 strain. Amentoflavone was genotoxic at the concentration of 100 μg/plate, but 4′ monomethoxyamentoflavone was inactive at the highest concentration of 400 μg/plate tested. The results of the antibacterial, antioxidant and cytotoxicity testing were encouraging and indicated the potential usefulness of Garcinia livingstonei in traditional medicine and drug discovery. However, the genotoxicity assay revealed potential mutagenic effects of amentoflavone, a compound isolated from the plant. Therefore, it is suggested that application of Garcinia livingstonei extracts in the treatment of human and animal ailments be done with caution to avoid mutagenic effects on the treated subjects. A relatively small change in the structure of the two compounds by replacing an hydroxyl group with a methoxy group had a major effect in increasing antibacterial and antioxidant activity and in decreasing cellular and genotoxicity. This illustrates the potential value of modifying a molecule before its possible therapeutic use. Copyright / Dissertation (MSc (Veterinary Science))--University of Pretoria, 2009. / Paraclinical Sciences / unrestricted

ABSTRACT GENETIC VARIABILITY IN HYDRASTIS CANADENSIS L. USING RAPD ANALYSIS FEBRUARY 2009 KERRY J. KELLEY, B.A. MOUNT HOLYOKE COLLEGE M.A. UNIVERSITY OF MASSACHUSETTS AMHERST Directed by: Professor Lyle Craker Hydrastis canadensis L. (goldenseal) is an endangered perennial wildflower species native to eastern North America. In this study, several populations of goldenseal, (both cultivated and wild type) were analyzed for genetic variability. The samples were collected from plant populations in North Carolina, Ohio, Pennsylvania and West Virginia and preserved using silica gel during collection. Random amplified polymorphic DNA (RAPD) analysis technique was used to generate DNA profiles from individual plants and to estimate genetic variability between groups (cultivated and wild type), among populations within groups and within populations using analysis of molecular variance (AMOVA) and a UPGMA clustering phenogram. Our results demonstrate that the bulk of genetic diversity may be within and among populations, but not between groups. This indicates the need for preservation and conservation efforts at the population level. The next step would be to study goldenseal populations more in depth for underlying causes of the genetic variability observed in this study. Further study of genetic variability with different molecular markers may be needed to clarify the level of diversity for the species at the group level. Increased knowledge of genetic variability and the identification of accessions of goldenseal would prove useful for reintroduction and cultivation strategies.

No description available.

New Zealand's South Island tussock grasslands have been highly modified by human activities, including burning, grazing and introductions of exotic plants for pastoralism. Studies suggest that tussock grasslands are degraded, in that native species have declined, and exotic species have increased in both diversity and abundance. These trends are primarily thought to be related to the impacts of grazing and subsequent grazing removal. Few studies have assessed long-term changes that have occurred in tussock grasslands, and those that have are generally limited to one particular location. This thesis aimed to investigate temporal changes in community structure in tussock grasslands, and relate these changes to environmental variables and land tenure. Data were used from 90 permanently-marked vegetation transects, which were set up on 19 geographically widespread properties in areas of tussock grassland across Canterbury and Otago in the South Island of New Zealand. The transects were on land in both conservation and pastoral tenure. Each transect was 100 m, and consisted of 50 0.25 m² quadrats. The transects were measured between 1982 and 1986 (first measurement), were re-measured between 1993 and 1999 (second measurement) and again between 2005 and 2006 (third measurement). A total of 347 vascular species were observed over the 90 transects and three measurement times. Species richness declined between the first and second measurements (first time interval), and increased between the second and third measurements (second time interval), at both the small (quadrat) and large (transect) scales. Both native and exotic species declined in mean quadrat species richness during the first time interval, and then increased during the second time interval. Changes in mean quadrat species richness were similar on transects in both conservation and pastoral tenure. Multivariate analysis of species' occurrences in quadrats identified a long gradient in species composition for these 90 transects. Four key plant communities were identifed along this gradient and differed in their mean elevation: (1) Highly-modified pastoral community, (2) Short-tussock grassland community, (3) Tall-tussock grassland community, (4) Alpine mat-forming species community. A detailed investigation into temporal changes that occurred on 53 transects that occurred in short- and tall-tussock grassland communities showed that changes in species composition were not consistent over time. Transects on different properties changed in species composition by different amounts. Specifically, in ordination space, transects on two properties changed in composition significantly more than transects on one other property. The property that a transect was on also affected the way that it changed in composition, i.e. native species were more likely to have increased on transects on some properties. Transects in conservation tenure did not change in species richness or composition differently from those in pastoral tenure. Considering that many native plants in tussock grasslands are relatively slow-growing, and that these areas have been grazed and burned for more than a century, we may expect it to be some time before we can detect differences in vegetation dynamics on conservation land from that on pastoral land. The changes in the community structure of these tussock grasslands were related to a combination of environmental factors, such as soil chemistry, climate, and management factors. This study has allowed greater understanding of vegetation change in tussock grasslands, and demonstrates the importance of long-term ecological monitoring in making reliable and accurate predictions about landscape-scale changes in tussock grassland community structure.

The diversity of microorganisms and the influence of their enzymatic activities in soil are critical to the maintenance of good soil health. Changes in these parameters may be the earliest predictors of soil quality changes, potentially indicating anthropogenic influences. The goal of this study was to investigate the soil microbial diversity and function of grasslands along an urbanization gradient. Soil samples were collected in the Potchefstroom municipal area, South Africa, at specific sites. Sampling sites were described as urban, suburban and rural - according to the V-I-S (Vegetation-Impervious surface-Soil) model of Ridd (1995). Soil samples were collected over a warmer, wet season (May) and a colder, dry season (August) over two years (2007 and 2008). Collected soil samples were characterised using certain physical and chemical parameters. Plant species composition and abundance were determined at each site, along with basic site data (soil compaction, percentage ground cover, percentage bare ground, percentage organic material present). The Shannon-Weaver diversity index was used to calculate biodiversity values for all the investigated sites regarding collected plant species composition. The microbial component of the soil was quantified and characterized using culture-dependent and culture-independent techniques. Culture-dependent techniques included the investigation of the aerobic heterotrophic bacteria and fungi. Organisms were plated out on different media, and the bacterial component was broadly grouped using morphology. Dominant organisms were identified by sequencing of PCR amplified 16S ribosomal DNA fragments. Shannon-Weaver index for bacterial diversity was determined for each of the sites. Denaturing gradient gel electrophoresis (DGGE) profiling of selected bacterial communities were also conducted. Microbial community function was determined using enzyme assays of five major groups of enzymes, namely (i) dehydrogenase; (ii) β-glucosidase; (iii) acid phosphatase, (iv) alkaline phosphatase and (v) urease. Plant species results were then brought into context with microbiological diversity and functionality results using multivariate statistics. Physical and chemical parameters of the collected soil samples revealed patterns present along the urbanization gradient. The pH values were mostly higher in the sub-urban and urban sites than in the rural sites. Electrical conductivity values were generally highest in the sub-urban sites. Plant species composition revealed trends along the urbanization gradient. Ordinations clearly grouped the plant species into rural, sub-urban and urban groups regarding plant species composition. Rural sites had the highest number of plant species. Shannon-Weaver values regarding the plant diversity supported the plant species composition data indicating higher plant diversity in the rural areas, followed by the sub-urban and the urban areas. Plant structural data indicated that forbs were most numerous in the rural sites, and less so in the urban sites. Higher average aerobic heterotrophic bacterial levels were present in the urban soil samples. The bacterial levels were lower in the sub-urban and rural soil samples. Subsequent identification of the dominant bacteria in the soil samples revealed organisms of the genus Bacillus dominated the aerobic heterotrophic bacterial communities in the soil samples. Bacillus species dominated the soil samples along the urbanization gradient. Shannon-Weaver indices based on culture-dependent methods indicated that urban sites had the highest biodiversity. These results could have been exaggerated, because of an overestimation of the number of bacterial morphotypes present in samples. Fungal levels were higher in the soil from samples collected at the rural samples sites. The culture-independent method (DGGE) was not optimized and inconclusive results were obtained. Enzyme assays revealed that potential dehydrogenase, β-glucosidase and urease activity followed a trend along the urbanization gradient, with urban samples registering the highest values and rural sites the lowest. Enzymes involved in carbohydrate catabolism (β-glucosidase and dehydrogenase) registered significantly higher potential activity in urban sites than the sub-urban and rural sites. The results could indicate that urban sites have the potential to lose carbon at higher rates than the rural sites. This aspect may need further investigation. Higher potential urease activity could indicate higher N-cycling in the urban soil environment. Ordination results for soil-, plant- and microbial diversity as well as microbial functionality indicated certain trends along the urbanization gradient. Plant species composition and structure data indicated that urbanization has a definite effect on the plant communities in the urban ecosystem. Results regarding aerobic heterotrophic bacteria populations and potential enzyme activity of the dehydrogenase, β-glucosidase (both active in the carbon cycle) and urease (active in the nitrogen cycle) illustrated clear trends along the urbanization gradient. In conclusion, results indicated that urbanization has an effect on plant species composition, and the population and function of aerobic heterotrophic bacteria and the fungal population. Furthermore, this study demonstrated the potential of using microbial diversity and activity as tools to investigate carbon utilization and storage along an urban-rural gradient. / MSc (Environmental Sciences), North-West University, Potchefstroom Campus, 2011

The diversity of microorganisms and the influence of their enzymatic activities in soil are critical to the maintenance of good soil health. Changes in these parameters may be the earliest predictors of soil quality changes, potentially indicating anthropogenic influences. The goal of this study was to investigate the soil microbial diversity and function of grasslands along an urbanization gradient. Soil samples were collected in the Potchefstroom municipal area, South Africa, at specific sites. Sampling sites were described as urban, suburban and rural - according to the V-I-S (Vegetation-Impervious surface-Soil) model of Ridd (1995). Soil samples were collected over a warmer, wet season (May) and a colder, dry season (August) over two years (2007 and 2008). Collected soil samples were characterised using certain physical and chemical parameters. Plant species composition and abundance were determined at each site, along with basic site data (soil compaction, percentage ground cover, percentage bare ground, percentage organic material present). The Shannon-Weaver diversity index was used to calculate biodiversity values for all the investigated sites regarding collected plant species composition. The microbial component of the soil was quantified and characterized using culture-dependent and culture-independent techniques. Culture-dependent techniques included the investigation of the aerobic heterotrophic bacteria and fungi. Organisms were plated out on different media, and the bacterial component was broadly grouped using morphology. Dominant organisms were identified by sequencing of PCR amplified 16S ribosomal DNA fragments. Shannon-Weaver index for bacterial diversity was determined for each of the sites. Denaturing gradient gel electrophoresis (DGGE) profiling of selected bacterial communities were also conducted. Microbial community function was determined using enzyme assays of five major groups of enzymes, namely (i) dehydrogenase; (ii) β-glucosidase; (iii) acid phosphatase, (iv) alkaline phosphatase and (v) urease. Plant species results were then brought into context with microbiological diversity and functionality results using multivariate statistics. Physical and chemical parameters of the collected soil samples revealed patterns present along the urbanization gradient. The pH values were mostly higher in the sub-urban and urban sites than in the rural sites. Electrical conductivity values were generally highest in the sub-urban sites. Plant species composition revealed trends along the urbanization gradient. Ordinations clearly grouped the plant species into rural, sub-urban and urban groups regarding plant species composition. Rural sites had the highest number of plant species. Shannon-Weaver values regarding the plant diversity supported the plant species composition data indicating higher plant diversity in the rural areas, followed by the sub-urban and the urban areas. Plant structural data indicated that forbs were most numerous in the rural sites, and less so in the urban sites. Higher average aerobic heterotrophic bacterial levels were present in the urban soil samples. The bacterial levels were lower in the sub-urban and rural soil samples. Subsequent identification of the dominant bacteria in the soil samples revealed organisms of the genus Bacillus dominated the aerobic heterotrophic bacterial communities in the soil samples. Bacillus species dominated the soil samples along the urbanization gradient. Shannon-Weaver indices based on culture-dependent methods indicated that urban sites had the highest biodiversity. These results could have been exaggerated, because of an overestimation of the number of bacterial morphotypes present in samples. Fungal levels were higher in the soil from samples collected at the rural samples sites. The culture-independent method (DGGE) was not optimized and inconclusive results were obtained. Enzyme assays revealed that potential dehydrogenase, β-glucosidase and urease activity followed a trend along the urbanization gradient, with urban samples registering the highest values and rural sites the lowest. Enzymes involved in carbohydrate catabolism (β-glucosidase and dehydrogenase) registered significantly higher potential activity in urban sites than the sub-urban and rural sites. The results could indicate that urban sites have the potential to lose carbon at higher rates than the rural sites. This aspect may need further investigation. Higher potential urease activity could indicate higher N-cycling in the urban soil environment. Ordination results for soil-, plant- and microbial diversity as well as microbial functionality indicated certain trends along the urbanization gradient. Plant species composition and structure data indicated that urbanization has a definite effect on the plant communities in the urban ecosystem. Results regarding aerobic heterotrophic bacteria populations and potential enzyme activity of the dehydrogenase, β-glucosidase (both active in the carbon cycle) and urease (active in the nitrogen cycle) illustrated clear trends along the urbanization gradient. In conclusion, results indicated that urbanization has an effect on plant species composition, and the population and function of aerobic heterotrophic bacteria and the fungal population. Furthermore, this study demonstrated the potential of using microbial diversity and activity as tools to investigate carbon utilization and storage along an urban-rural gradient. / MSc (Environmental Sciences), North-West University, Potchefstroom Campus, 2011