Thesis (MScConEcol)--Stellenbosch University, 2014. / ENGLISH ABSTRACT: Restoration practices commonly make use of a reference condition in order to restore a site to a better ecological state than it is currently in. The selection process and relevance of the reference condition has not yet been tested in upland Western Cape rivers especially with relation to spatial and temporal scales. This thesis sought to evaluate whether space (longitudinal) and time (temporal) influence riparian plant community composition (laterally), how it influences the community composition and whether these differences impacts the selection of a reference condition used in restoration practices. In order to investigate the role longitudinal position, sites were selected across three longitudinal zones: mountain stream, transitional and upper foothills. Historic sites used in a previous study on riparian vegetation of upland rivers were resampled and datasets used for temporal comparisons between undisturbed sites, sites recovering after clearing of invasive alien plants and sites affected by fire. Riparian vegetation communities showed differences between longitudinal zones, basins and rivers. The species responsible for marginal zone identity (plants in close proximity to the active channel), determined using relative cover abundance varied, with Isolepis prolifera responsible for the group identity in the mountain stream and transitional sites but in the foothills Calopsis paniculata, Drosera capensis and Metrosideros angustifolia saplings were responsible for lateral zone identity. The lower dynamic (transitional between wet and drybank) had no similarities between different longitudinal zones across rivers. In the lower zone Pteridium aqualinum was mostly responsible for the identity. The upper bank had no single species responsible for group identity. The species described to be typical for the reference condition on these particular rivers by other studies were mostly present in the comparable lateral zone but it was however not always responsible for the identity of the specific lateral zone. By comparing selected environmental variables such as horizontal distance from active channel, elevation and substrate calibre with different longitudinal zones’ riparian vegetation species distribution, different combinations were produced. The mountain streams showed the strongest relationship with horizontal distance and elevation in combination to one another and the upper foothills horizontal distance from the active channel was linked most strongly to vegetation positioning. These results confirm the importance of space when attempting to assess, study or restore riparian communities. Temporally, sites had stronger similarity to data collected during the same sampling period than with historic data. Also, the overall relative species abundance did not show significant change to be present at a site scale. The changes in community composition were found to be due to a lateral zone scale variation in species abundance. As expected the undisturbed rivers showed less variation in species responsible for temporal changes than the recovering and fire-exposed rivers. Species responsible for changes in relative abundance at a lateral zone scale were Metrosideros angustifolia, Morella serrata, Brabejum stellatifolium, Isolepis prolifera, Elegia capensis, Prionium serratum and Calopsis paniculata. Due to the species diversity not changing much temporally but the relative abundance of specific species showing much variation over time it can be concluded that the changes are not diversity based but instead driven by changes in relative abundances of species typical for a lateral zone. The spatial and temporal variation in riparian vegetation community composition was found to be significant enough to suggest that the use of a fixed reference condition for all Western Cape rivers would not be feasible due to clear differences between basins. Secondly when selecting a reference site the spatial location of this site should be within the same longitudinal zone since bank shape does influence riparian plant species distribution. Finally the temporal comparison between sites showed high diversity in species abundances but small differences in diversity overall. This would suggest that a general community description specific to 1) where the site is situated and 2) based on the present riparian vegetation community composition within a specific basin may be more realistic and achievable for restoration and environmental management purposes as opposed to using site descriptions from the past and reference sites too far upstream or downstream from the restoration site. / AFRIKAANSE OPSOMMING: Herstel praktyke maak algemeen gebruik van 'n verwysing toestand om 'n terrein te herstel na 'n beter ekologiese toestand as wat dit tans is. Die keuringsproses en relevansie van die verwysing toestand is nog nie in die boonste gedeeltes van Wes-Kaap Riviere getoets nie, veral met betrekking tot ruimtelike en tydskale nie. Hierdie tesis het gesoek om te evalueer of ruimte (longitudinaal) en tyd (temporaal) rivieroewers plant gemeenskap samestelling (lateraal) beïnvloed en of hierdie verskille die keuse van 'n verwysing toestand in die herstel praktyke beïnvloed. Ondersoek terreine was oor drie longitudinale sones geselekteer: berg stroom, oorgangs en boonste hange terreine. Historiese terreine was weer ondersoek en die datastelle was gebruik vir die temporale vergelykings tussen onversteurde terreine, terreine wat herstel na die skoonmaak van indringer spesies en wat geraak was deur 'n brand. Oewerplantegroei gemeenskappe het verskille tussen longitudinale sones, rivier-kom en rivier takke gewys. Die spesies wat verantwoordelik was vir marginale zone (plante in nabye afstand met die aktiewe rivier kanaal) identiteit, bepaal met behulp van relatiewe dekking hoeveelheid, het gevarieer met Isolepis prolifera verantwoordelik vir die groep identiteit in die berg stroom en oorgangs trerreine, maar in die boonste hange was dit Calopsis paniculata, Drossera capensis en Metrosideros angustifolia boompies wat verantwoordelik was vir die laterale sone identiteit. Die laer dinamiese area het geen ooreenkomste tussen marginale gebiede van verskillende longitudinale sones gehad nie. In die onderste sone was Pteridium aqualinum meestal verantwoordelik vir die groepering se identiteit. Die boonste bank het nie 'n enkele spesie wat verantwoordelik was vir die groep identiteit gehad nie. Die spesies beskryf as tipies vir die laterale sone deur Reinecke et al. (2007) was meestal teenwoordig in die beskryfde laterale sone van hierdie studie, maar dit was egter nie altyd verantwoordelik vir die identiteit van die laterale sone gemeenskap nie. Verskillende lengte sones het gekorreleer met verskillende omgewingsveranderlikes wat sterkste gekoppel kon word aan die verspreiding van spesies. Die bergstrome het die sterkste verhouding met horisontale afstand en hoogte in kombinasie met mekaar gehad en in die boonste hange was horisontale afstand van die aktiewe kanaal die sterkste gekoppel aan plantegroei posisie. Die belangrikheid van ruimte is onmiskenbaar ten opsigte van evaluering, bestudering en die herstel van rivieroewers gemeenskappe. Terreine het sterker ooreenkoms met data gehad wat tydens dieselfde tydperk versamel was, as met historiese data. Die algehele relatiewe spesies hoeveelheid het egter nie beduidende verandering getoon op 'n terrein skaal nie. Soos verwag was het die onversteurde riviere minder temporale variasie in spesies getoon as die herstellende en brand blootgestelde riviere. Spesies wat verantwoordelik was vir die verandering in relatiewe hoeveelhede op 'n laterale sone skaal was M. angustifolia, Morella serrata, Brabejum stellatifolium, I. prolifera, Elegia capensis, Prionium serratum en C. paniculata. As gevolg van die diversiteit van spesies wat nie baie verander het tydelik nie, maar die relatiewe hoeveelheid van spesifieke spesies wat heelwat variasie oor tyd getoon het, kan dit afgelei word dat die veranderinge nie diversiteit gebaseerd was nie, maar eerder gedryf was deur veranderinge in relatiewe hoeveelhede van tipiese spesies in 'n laterale sone. Die ruimtelike en tydelike variasie in oewerplantegroei gemeenskap samestelling was beduidende genoeg om voor te stel dat die gebruik van 'n vaste verwysing toestand vir alle Wes-Kaapse riviere nie haalbaar sou wees nie as gevolg van duidelike verskille tussen riviere. Tweedens, by die kies van 'n verwysing terrein moet die ruimtelike plek van hierdie terrein in dieselfde lengte sone wees aangesien bank vorm 'n invloed op rivieroewer plant verspreiding het. Laaastens, het die tydelike vergelyking tussen terreine hoë diversiteit in spesies verspreidings maar klein verskille in algehele diversiteit gehad. Dit stel voor dat 'n algemene beskrywing van die gemeenskap wat spesifiek op 1) waar die terrein geleë is en 2) gebaseer op die huidige oewerplantegroei gemeenskap samestelling binne 'n spesifieke rivier netwerk dalk meer realisties en haalbaar vir hersteel en bestuurs doeleindes sou wees. Hierdie benadering word verkies bo die gebruik van n terrein beskrywings uit die verlede en verwysing terreine te ver stroomop of stroomaf van die herstel gebied.

Fine roots constitute a large part of the primary production in northern (arctic and boreal) ecosystems, and are key players in ecosystem fluxes of water, nutrients and carbon. Data on root dynamics are generally rare, especially so in northern ecosystems. However, those ecosystems undergo the most rapid climatic changes on the planet and a profound understanding of form, function and dynamics of roots in such ecosystems is essential. This thesis aimed to advance our knowledge about fine root dynamics in northern ecosystems, with a focus on fine root phenology in natural plant communities and how climate change might alter it. Factors considered included thickness and duration of snow cover, thawing of permafrost, as well as natural gradients in temperature. Experiments and observational studies were located around Abisko (68°21' N, 18°45' E), and in a boreal forest close to Vindeln (64°14'N, 19°46'E), northern Sweden. Root responses included root growth, total root length, and root litter input, always involving seasonal changes therein, measured with minirhizotrons. Root biomass was also determined with destructive soil sampling. Additionally, aboveground response parameters, such as phenology and growth, and environmental parameters, such as air and soil temperatures, were assessed. This thesis reveals that aboveground patterns or responses cannot be directly translated belowground and urges a decoupling of above- and belowground phenology in terrestrial biosphere models. Specifically, root growth occurred outside of the photosynthetically active period of tundra plants. Moreover, patterns observed in arctic and boreal ecosystems diverged from those of temperate systems, and models including root parameters may thus need specific parameterization for northern ecosystems. In addition, this thesis showed that plant communities differ in root properties, and that changes in plant community compositions can thus induce changes in root dynamics and functioning. This underlines the importance of a thorough understanding of root dynamics in different plant community types in order to understand and predict how changes in plant communities in response to climate change will translate into root dynamics. Overall, this thesis describes root dynamics in response to a variety of factors, because a deeper knowledge about root dynamics will enable a better understanding of ecosystem processes, as well as improve model prediction of how northern ecosystems will respond to climate change.

Fine roots constitute a large part of the primary production in northern (arctic and boreal) ecosystems, and are key players in ecosystem fluxes of water, nutrients and carbon. Data on root dynamics are generally rare, especially so in northern ecosystems. However, those ecosystems undergo the most rapid climatic changes on the planet and a profound understanding of form, function and dynamics of roots in such ecosystems is essential. This thesis aimed to advance our knowledge about fine root dynamics in northern ecosystems, with a focus on fine root phenology in natural plant communities and how climate change might alter it. Factors considered included thickness and duration of snow cover, thawing of permafrost, as well as natural gradients in temperature. Experiments and observational studies were located around Abisko (68°21' N, 18°45' E), and in a boreal forest close to Vindeln (64°14'N, 19°46'E), northern Sweden. Root responses included root growth, total root length, and root litter input, always involving seasonal changes therein, measured with minirhizotrons. Root biomass was also determined with destructive soil sampling. Additionally, aboveground response parameters, such as phenology and growth, and environmental parameters, such as air and soil temperatures, were assessed. This thesis reveals that aboveground patterns or responses cannot be directly translated belowground and urges a decoupling of above- and belowground phenology in terrestrial biosphere models. Specifically, root growth occurred outside of the photosynthetically active period of tundra plants. Moreover, patterns observed in arctic and boreal ecosystems diverged from those of temperate systems, and models including root parameters may thus need specific parameterization for northern ecosystems. In addition, this thesis showed that plant communities differ in root properties, and that changes in plant community compositions can thus induce changes in root dynamics and functioning. This underlines the importance of a thorough understanding of root dynamics in different plant community types in order to understand and predict how changes in plant communities in response to climate change will translate into root dynamics. Overall, this thesis describes root dynamics in response to a variety of factors, because a deeper knowledge about root dynamics will enable a better understanding of ecosystem processes, as well as improve model prediction of how northern ecosystems will respond to climate change.

Explosive compounds are broadly distributed across the globe as a result of nearly two centuries of munitions use in warfare and military activities. Two explosive compounds have seen disproportionate use; RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine) and TNT (2-methyl- 1,3,5-trinitrobenzene), being the most commonly found explosives in the environment. The effects of explosives on biota have been studied in great detail; however, there is a general lack of understanding with regard to broader ecological impacts of these contaminants. My dissertation objective was to follow the impacts of explosive compounds on vegetation across scales. Impacts on vegetation at the species scale alter community composition via species-specific and age-specific responses to explosives. Results presented here showed that contaminated soils induced a variety of responses in vegetation, yet impacts to water relations were similar regardless of species. Use of novel metrics in monitoring plant responses to explosives compounds aided in delineation of reference and treatment groups. At the community scale the presence of explosives induced species and functional composition shifts. The observed shifts are likely due to physiological impairment as individuals in the field exhibited significant impacts to physiological functions. Effects of explosives contamination also detectable using remote sensing techniques. Impacts to plant morphology and physiology are directly related to community level shifts observed in long contaminated areas. This highlights the long lasting impacts that these largely overlooked contaminants can have on a system and opens avenues for new, at range, vegetation based contaminant detection systems.

Le changement climatique est connu pour entraîner une redistribution spatiale des conditions climatiques et avec elle une migration des espèces vers les pôles et les sommets. De tels changements impliquent une réorganisation des communautés végétales dont la nature, l'intensité et le déterminisme sont encore peu connus. L'objectif de cette thèse est d'évaluer, à large échelle spatiale et sur de longs pas de temps, les changements de composition des communautés végétales forestières induits par le réchauffement climatique, ainsi qu'analyser les facteurs écologiques et géographiques contribuant à ces changements à l'échelle de l'espèce et des communautés. La réponse de la flore forestière vis-à-vis du réchauffement climatique a été étudiée à l'échelle du territoire français (~546000 km²) à partir de larges bases de données d'observations floristiques, de données environnementales mesurées et modélisées, et d'une approche modélisatrice basée sur le concept de niche écologique et sur le caractère bio-indicateur des espèces. Dans un premier temps, nous avons montré que le remaniement des communautés végétales a permis la compensation de 0.54°C du réchauffement climatique ayant touché les forêts de montagne entre les périodes 1965–1986 et 1987–2008 (i.e. +1.07°C) contre seulement 0.02°C pour les forêts de plaine (réchauffement = 1.11°C). Cette compensation partielle démontre l'existence d'une dette climatique de la flore induite par le réchauffement climatique. L'importance de cette dette en plaine par rapport aux montagnes provient probablement de l'effet combiné d'un déficit d'extinction et de migration des espèces en plaine conduit respectivement par une plus large tolérance thermique des plantes forestières sur cette zone et par une migration des plantes a priori (i) limitée par l'importante fragmentation des forêts de plaine et (ii) inférieure au déplacement des conditions thermiques en plaine. Les particularités écologiques et géographiques des forêts de plaine et de montagne nous ont amené à considérer deux types de menaces induites par le changement climatique : (i) l'attrition biotique en plaine, et (ii) la perte d'une biodiversité historique et spécifique en montagne (réduction de l'habitat des espèces alpines aboutissant à leur disparition) remplacée probablement par des espèces plus communes. Dans un second temps, les effets de facteurs abiotiques, biotiques et géographiques pouvant amplifier ou réduire les changements de distribution des espèces et de composition des communautés induits par le réchauffement climatique ont été caractérisés. [...] Suite et fin du résumé dans la thèse. / Climate change is known to cause a spatial redistribution of climatic conditions which is driving poleward and upward range shifts. Such shifts imply a reorganization of plant communities which is still poorly understood. Here we aimed to assess the changes in plant communities' composition induced by climate warming at a global scale and over a long time period, as well as to analyze the effects of ecological and geographical factors that contribute to these changes at the species and community levels. The response of the forest flora to the raising temperature has been studied across the French metropolitan territory (~546,000 km²) from large floristic databases, measured and modeled environmental data, and a modeling approach based on the concept of ecological niche and the bioindicator properties of plant species. First, we showed that the reshuffling of plant communities allowed to recover 0.54°C of the temperature increase between the periods 1965–1986 and 1987–2008 in highland forests (i.e. +1.07°C), while it recovered only 0.02°C in lowland forest (warming = 1.11 °C). This partial compensation demonstrates the current occurrence of a climatic debt in forest vegetation caused by climate warming. The high climatic debt observed in lowland forest compared to the highland one is likely due to extinction and migration debts caused by a wider temperature tolerance of plants in lowland communities and a plant migration capacity (i) limited by the high spatial fragmentation of the lowland forest habitat and (ii) shorter than the shift of thermal conditions in lowland areas, respectively. The ecological and geographical specificity of lowland and highland forests led us to consider two different threats induced by climate change: (i) biotic attrition in lowland areas, and (ii) loss of a specific and an historic biodiversity in highland forest (mountaintop extinction of alpine species due the surface decrease of their potential habitat) likely replaced by more common species assemblage (increase of generalist plants). Second, the effects of abiotic, biotic and geographical factors which can amplify or reduce the magnitude of both the species range shifts and the reshuffling of plant communities induced by global warming were characterized. Last and final summary in the thesis.

O objetivo deste trabalho foi analisar o efeito de quatro intensidades de redução da área basal, representadas pela exploração e desbastes sistemáticos, na composição florística, diversidade, estrutura e dinâmica do extrato arbóreo, durante um período de 22 anos. O experimento se localiza na Floresta Nacional do Tapajós, município de Belterra, Pará, a altura do km 114 da Rodovia Santarém-Cuiabá. O delineamento estatístico utilizado foi Blocos ao Acaso com 4 repetições onde foram testados os seguintes tratamentos: T0: controle, representado pela floresta não explorada; T1: Abate de árvores comerciais com DAP ≥ 45cm, sem nenhuma intervenção posterior; T2: Abate de árvores comerciais DAP ≥ 55cm + desbaste de espécies não comerciais para reduzir a área basal em 20% da original; T3: Abate de árvores comerciais DAP ≥ 55cm + desbaste de espécies não comerciais para reduzir a área basal em 40% da original; T4: Abate de árvores comerciais DAP ≥ 55cm + desbaste de espécies não comerciais para reduzir a área basal em 60% da original. Cada bloco possui uma área de 36ha, sendo 9ha por tratamento. Em cada tratamento foram instaladas ao acaso 12 parcelas permanentes (PP) de 0,25ha, onde foram medidas todas árvores com diâmetro ≥ 5,0cm. A exploração de madeira foi realizada em 1982 e os desbastes foram iniciados em 1993 e concluídos em 1994, com a finalidade de reduzir a área basal do povoamento e, com isso, propiciar a maior penetração de luz, favorecendo o desenvolvimento e estabelecimento das espécies comerciais. As medições das PP na área explorada foram realizadas 1 ano antes da exploração (1981), e após a exploração nos anos de 1983, 1987, 1989, 1995 e 2003. Para a área testemunha foram realizadas 5 medições: 1983, 1987, 1989, 1995 e 2003. Os resultados mostraram que, 21 anos depois da exploração e nove após os desbastes, todos os tratamentos, exceto o testemunha, apresentaram aumento no número de espécies, o que indica o efeito positivo das intervenções. Cinco anos após a exploração, todos os tratamentos apresentaram número de árvores superior ao encontrado antes da intervenção, inclusive considerando somente as espécies de valor comercial. Porém, a área basal e o volume apresentaram recuperação mais lenta, ocorrendo de forma mais efetiva nas primeiras classes de diâmetro (5-45cm). Nas classes acima de 45cm, que foram as mais afetadas pela extração de madeira, a área basal, 21 anos após a exploração, ainda está, em média, 30% abaixo do valor original. As intervenções também alteraram a dinâmica da floresta, elevando as taxas de mortalidade, estimulando o aumento no número de ingressos e a aceleração nas taxas crescimento das árvores remanescentes. O tratamento T3 foi considerado o mais adequado porque induziu ao maior aumento na riqueza florística e favoreceu várias espécies de valor comercial madeireiro que aumentaram sua participação na abundância e área basal no povoamento. Esse tratamento também mostrou a maior taxa de recuperação da área basal comercial (aproximadamente 90%), e as maiores taxas de incremento em AB e volume, no período após a aplicação do desbaste. / The objective of this work was to analyze the effect of four intensities of basal area reduction, represented by systematic logging and liberation thinning, on the floristic composition, diversity, structure and dynamics of arboreal extract, over a period of 22 years. The experiment is located in the Tapajós National Forest, municipality of Belterra, Pará, at km 114 of the Santarém-Cuiabá Highway. The statistical delineation employed was Random Blocks with 4 repetitions, in which the following treatments were tested: T0: control, represented by unlogged forest; T1: Felling of commercial trees with DBH ≥ 45cm, with no posterior intervention; T2: Felling of commercial trees DBH ≥ 55cm + thinning of non-commercial species to reduce the original basal area by 20%; T3: Felling of commercial trees DBH ≥ 55cm + thinning of non-commercial species to reduce the original basal area by 40%; T4: Felling of commercial trees DBH ≥ 55cm + thinning of non-commercial species to reduce the original basal area by 60%. Each block measured 36ha, with 9ha for each treatment. In each treatment 12 0,25ha permanent parcels (PP) were randomly installed, in which all trees with diameter ≥ 5,0cm were measured. Logging was carried out in 1982 and the thinning treatments were begun in 1993 and concluded in 1994, with the purpose of reducing the basal area of the population and, so provide greater light penetration, favoring the development and establishment of commercial species The measurements of PP in the harvested area were carried out 1 year before logging (1981), and after logging in the years 1983, 1987, 1989, 1995 and 2003. For the unlogged area 5 measurements were done: 1983, 1987, 1989, 1995 and 2003. The results showed that, 21 years after logging nine after the thinnings, all of the treatments, except the witness, showed an increase in the number of species, which indicates the positive effect of the interventions. Five years after logging, all the treatments showed a greater number of trees than what was found before the intervention, including a count only of species with commercial value. However, the basal area and volume showed a lower recovery, occurring most effectively in the first diameter classes (5-45cm). In the classes above 45cm, which were the ones most affected by timber harvesting, the basal area, 21 years after logging, is still on average 30% below the original value. The interventions also alter forest dynamics, increasing mortality rates, stimulating an increase in the number of ingresses and acceleration in growth of remaining trees. Treatment T3 was considered the most adequate one, because it induced a greater increase in floristic diversity and favored several species with commercially valuable timber, which increased their participation in terms of abundance and basal area in the population. This treatment also showed the highest recovery rate for the commercial basal area (approximately 90%), and the greatest increments in AB and volume, in the period after application of the thinnings.

Explicar os padrões de diversidade de espécies e entender os processos que geram e mantêm essa diversidade na natureza é um dos grandes objetivos da Ecologia. A teoria clássica de competição prevê que duas espécies só podem coexistir quando há divergência no uso de recursos. Portanto, há um limite de similaridade imposto pela competição entre as espécies, que leva à co-ocorrência de espécies com estratégias ecológicas mais diferentes entre si. Por outro lado, o ambiente físico pode impor restrições às possíveis estratégias ecológicas das espécies. Ambientes com limitações de recursos ou condições desfavoráveis permitem apenas a sobrevivência de espécies com estratégias mais similares, um processo conhecido como filtro ambiental. Dois processos podem então gerar padrões antagônicos na estrutura das comunidades, selecionando estratégias ecológicas mais parecidas ou mais diferentes entre si. Há ainda a possibilidade de que os dois processos ou mesmo nenhum dos dois seja importante na estruturação das comunidades, levando a um padrão aleatório ou neutro. Utilizando-se das contribuições proporcionais (elasticidades) das três taxas vitais demográficas - sobrevivência, crescimento e fecundidade - para a taxa de crescimento populacional para inferir as estratégias ecológicas das espécies de árvores de uma comunidade, nos propusemos a responder a pergunta: \"Qual processo é responsável pela estruturação de comunidades de árvores tropicais?\". O trabalho foi realizado em uma parcela permanente de 10,24 hectares na Restinga da Ilha do Cardoso, São Paulo. Todos os indivíduos com mais de 15cm de perímetro à altura do peito foram marcados, identificados e tiveram seus diâmetros à altura do peito registrados para dois censos. As elasticidades das três taxas vitais para 89 espécies de árvores foram obtidas por meio de um modelo de projeção integral (IPMs). Os IPMs são ferramentas modernas mais robustas que os clássicos modelos matriciais, comumente utilizados em estudos demográficos. Definimos um espaço ecológico no triângulo onde as estratégias ecológicas das espécies são classificadas de acordo com as elasticidades das três taxas demográficas. Construímos também uma filogenia molecular específica para a comunidade baseada nos marcadores cloroplásticos rbcL e matK, com a qual obtivemos as distâncias entre todos os pares de espécies. Calculamos o sinal filogenético das estratégias ecológicas por meio da correlação entre a distância entre as espécies no espaço ecológico e suas distâncias filogenéticas. Aceitamos a premissa de conservação das estratégias ecológicas na filogenia. As espécies puderam ser classificadas em quatro grupos demográficos distintos no espaço ecológico, distribuídos principalmente no eixo crescimento-sobrevivência, o que é esperado para árvores. Não há sinal filogenético para as estratégias ecológicas, o que indica que ambos os processos ou nenhum dos dois processos é importante na estruturação dessa comunidade. Nosso trabalho traz uma nova abordagem metodológica e resultados que contradizem a literatura recente, em que a importância dos filtros ecológicos na estruturação de comunidades tropicais é repetidamente encontrada. A confirmação deste padrão para outras comunidades poderá colaborar para o melhor entendimento dos processos estruturadores das comunidades tropicais. / One of Ecology\'s biggest goals is to explain the patterns of species\' diversity and to understand the processes that generate and maintain this diversity in natural communities. Classical competition theory predicts that two species will be able to coexist only when there is divergence in the use of resources, i.e., competition imposes a limiting similarity among species that allows co-occurrence of species with divergent ecological strategies. On the other hand, the physical environment may impose restrictions to the range of possible ecological strategies of species. Environments with limited resources or adverse conditions will allow the survival of species with more specific strategies, a process known as environmental filtering. These two processes will generate opposite effects on the structure of communities, as more similar or more different ecological strategies will be selected. There is still the possibility that both processes are occurring simultaneously, or neither are important for the community. In both cases, a neutral or random pattern is expected. Using the proportional contribution (elasticities) of the three demographic vital rates - survival, growth and fecundity - to the finite rate of increase of population as a mean of inferring the ecological strategy of trees in a community, we intended to answer the question: \"What process is responsible for the structuring of tropical tree communities?\". Data was collected in a Restinga forest 10.24 ha permanent plot. All individuals with more than 15cm of perimeter at breast height were marked, identified and had their diameters at breast height registered for two censes. Elasticities of the three vital rates for 89 tree species were obtained with an Integral Projection Model (IPM). IPMs are modern tools more robust than classical matrix models, commonly used in demographic studies. We defined an ecological space in the triangle where ecological strategies are plotted according to elasticities of the three vital rates. We also generated a molecular phylogeny based on rbcL and matK chloroplast markers, and used it to obtain the phylogenetic distance between all pairs of species. We calculated the phylogenetic signal of ecological strategies using the correlation between ecological distances in the ecological space and phylogenetic distances. We assumed ecological strategies to be conserved in the phylogeny. Species could be classified into four demographic groups in ecological space, distributed mainly in a growth-survival axis. This is expected for trees. No phylogenetic signal was found for the ecological strategies. This can mean that either both processes are structuring this community, or neither is important. Our study uses a new methodological approach and presents new results that contradict recent literature, on which environmental filtering is repeatedly accounted as the main process structuring tropical communities. Confirmation of this pattern for other communities may bring further understanding of structuring of tropical communities.

O presente estudo foi desenvolvido em trecho de Floresta Ombrófila Densa, localizada no Parque Estadual Carlos Botelho. SP., no sul do Estado de São Paulo, nas coordenadas geográficas 24o 00’ - 24o 15’ de latitude Sul, e 47o 55’ - 48o 05’ de longitude W, nos município de São Miguel Arcanjo, Sete Barras, Capão Bonito e Tapiraí, com o objetivo de comparar três métodos de amostragem (parcelas, quadrantes e relascopia) na determinação da composição florística, fitossociologia e diversidade de espécies do componente arbóreo. Com o emprego de imagens aéreas foram selecionadas duas áreas de amostragem, sendo a primeira, denominada Grade 1, localizada na parte mais alta do Parque no município de São Miguel Arcanjo - SP, e a segunda, denominada Grade 2, localizada a uma altitude de 650m., no município de Sete Barras - SP. A diferença de altitude entre as duas áreas é de 200m. aproximadamente. Na Grade 1, o método de parcelas amostrou 9543 indivíduos e 250 espécies, quadrantes 1276 indivíduos e 175 espécies e relascopia amostrou 638 indivíduos e 155 espécies. Na Grade 2, foram amostrados pelo método de parcelas 10124 indivíduos e 345 espécies, o método de quadrantes amostrou 1270 indivíduos e 207 espécies e a relascopia amostrou 578 indivíduos e 157 espécies. Foram registradas nas duas áreas de amostragem 65 famílias botânicas e 427 espécies arbóreas. As famílias Myrtaceae, Lauraceae, Fabaceae e Sapotaceae estavam presentes entre as dez famílias com maior riqueza de espécies, para os três métodos de amostragem empregados. A diversidade de espécies determinada pelo índice de Shannon registrou o maior índice para o método de parcela na Grade 2, H`= 4,702, sendo que o menor índice foi obtido pelo método de relascopia, H`= 4,411. Estes valores estão entre os maiores determinados até o presente para o componente arbóreo da vegetação do Parque Estadual Carlos Botelho, SP. Euterpe edulis e Ocotea catharinensis foram as espécies que mais se destacaram, por apresentarem os maiores valores de Índice de Valor de Importância (IVI), independente do método de amostragem. A Distância Euclidiana calculada para os parâmetros fitossociológicos Freqüência Relativa, Dominância Relativa, Densidade Relativa e Índice de Valor de Importância, mostra que os métodos de amostragem se comportaram de forma diferente na determinação desses parâmetros nas duas áreas de amostragem. / The following study was developed in tracks of the Dense Ombrophilous Forest, located in the Carlos Botelho State Park, SP., in the southern of the state of São Paulo, geographical coordinates of 24º00' - 24o 15’ South latitude and 47o 55’ - 48º05', West longitude, in the municipalities of São Miguel Arcanjo, Sete Barras, Capão Bonito and Tapiraí, with the objective of comparison of three sampling methods (parcels, point centred quarter and relascope) in determining the species composition, phytosociology and diversity of species in the arboreal component. In this vegetation, the sampling showed of 65 botanical families and 427 arboreas species. With the use of aerial images two areas were selected, the first one, designated Grid 1, being located in the highest part of the Park in the Sao Miguel Arcanjo municipality, and the second, designated Grid 2, located at a height of 650m., in the Sete Barras municipality. The height difference between these two areas is approximately 200m. In the Grid 1, the parcels method showed 9543 individuals and 250 species, the point center quarter method 1276 individuals and 175 species and the relascope method 638 species and 155 species. On Grid 2, we collected by the parcels method 10124 individuals and 345 species, the point center quarter method showed 1270 individuals and 207 species and the relascope method 578 individuals and 157 species. The families Myrtaceae, Lauraceae, Fabaceae and Sapotaceae presented the highest species richness in the three samples methods. The diversity of the species determined by the Shannon index recorded the highest index for the parcels method in Grid 2, H'=4.7202 and the smallest index was obtained by the relascope method H'=4.411, and these values are among the highest determined up to the present for the arboreal components of the vegetation for the Carlos Botelho State Park, SP. Euterpe edulis and Ocotea catharinensis were the outstanding species, by presenting the highest values in the Significant Value Index, independent of the sampling method. The Euclidian Distance calculated for the phytosociological parameters, Relative Frequency, Relative Dominance, Relative Density and Significant Value Index, shows that the samples methods behaves differently in characterizing the vegetation in Grid 1 and Grid 2.

Diversos estudos teóricos, experimentais e observacionais têm demonstrado que as relações entre a biodiversidade e as funções ecossistêmicas (BEF) são determinadas pela estrutura funcional da comunidade (ou seja, pela distribuição dos atributos das suas espécies constituintes). Isso pode ocorrer por meio de dois mecanismos mutuamente não exclusivos: (1) a hipótese de dominância (também denominada de efeito de relação de massa), na qual os processos ecossistêmicos são influenciados pela média ponderada na comunidade de um dado atributo funcional (CWM) considerado relevante; (2) a hipótese de complementaridade, na qual a maior variabilidade de um atributo funcional na comunidade (FD) é uma expressão da complementariedade de nicho, o que beneficia o desempenho dos processos ecossistêmicos. Embora ambos os mecanismos já tenham sido amplamente estudados em comunidades de plantas em pequenas escalas espaciais, análises globais considerando distintos biomas ainda são necessárias. Neste estudo, a relação entre biodiversidade e funcionamento dos ecossistemas foi avaliada com base na integração entre uma base de dados global de parcelas de vegetação (sPlot), uma base de dados de atributos de espécies de plantas (TRY) e dados do Índice de Vegetação por Diferença Normalizada (NDVI) obtidos por sensoriamento remoto. O objetivo foi verificar, simultaneamente, os efeitos de dominância e de complementaridade sobre a produção de biomassa vegetal em ecossistemas campestres em todo o mundo. Os dados sobre a estrutura funcional das comunidades (CWM e FD) foram obtidos a partir da base de dados sPLOT e TRY, utilizando para isso atributos funcionais de plantas ecologicamente relevantes. O NDVI, considerado como aproximação da produtividade da vegetação, representa uma medida do funcionamento do ecossistema e foi obtido a partir do produto MOD13Q do sensor MODIS, com resolução espacial de 250m. Para garantir que as medidas de NDVI fossem derivadas apenas de ecossistemas campestres, sem a interferência de outras fisionomias vegetais, foram descartadas as parcelas do sPlot com presença de paisagens heterogêneas no seu entorno mediante consulta a um mapa global de cobertura e uso da terra (Globcover2009). Para quantificar os efeitos independentes da dominância e da complementariedade sobre as variações no NDVI , com controle das variáveis climáticas, foi utilizada uma análise de regressão múltipla do tipo commonality. Os resultados demonstraram que o principal preditor da variação no NDVI correspondeu a um conjunto de atributos funcionais das espécies dominantes relacionados com o espectro de economia da comunidade vegetal (atributos fast-slow), indicando a prevalência da hipótese de dominância (R2 ajustado = 0,65). Os efeitos evidentes da dominância e os efeitos potenciais da complementariedade são discutidos no contexto da sua relação com os fatores abióticos, sendo que a precipitação pluviométrica, em particular, parece ter maior influência tanto sobre a composição de atributos quanto sobre a produtividade. Apesar de algumas limitações metodológicas, a abordagem inovadora utilizada neste trabalho pode ajudar a esclarecer as relações entre biodiversidade e funções ecossistêmicas em escala global, dentro de uma perspectiva integradora e baseada em dados. / Theoretical, experimental and observational studies show that biodiversity ecosystem functioning (BEF) relationships are determined by functional community structure (i.e. trait distributions in a community) through two mutually non-exclusive mechanisms: (1) The dominance hypothesis (a.k.a. mass ratio effect) links ecosystem processes to the community weighted mean (CWM) of a relevant effect trait. (2) The complementarity hypothesis states that higher variability of a trait value within a community (FD) reflects niche complementarity enhancing ecosystem processes. While both mechanisms have been extensively studied in plant communities at small spatial scales, there is a need for global analyses across biomes. Here, a data driven approach to the BEF question is presented integrating a global vegetation plot database with a trait database and remotely sensed NDVI. The objective of this study was to simultaneously evaluate dominance and complementarity effects in grassland systems worldwide. Data on functional community structure (CWM and FD) were obtained from the global vegetation plot database sPlot in combination with the plant trait database TRY using 18 ecologically relevant plant traits. Ecosystem functioning at the selected sPlot sites (n = 2941) was measured as NDVI at a spatial resolution of 250m using the MODIS product MOD13Q (annual peak NDVI being a proxy of productivity). The landcover map Globcover2009 was used for characterization of landscape heterogeneity and landcover at each site, and plots in heterogeneous non-grassland pixels were discarded. Multiple regression commonality analysis was used to disentangle the contributions of complementarity and dominance effects to the variation in NDVI, while controlling for climate variables (adjusted R2 = 0.65). The results show that a plant community economics spectrum referring to the “fast-slow traits” of the dominant species in the community was the strongest predictor of the NDVI values in the grassland systems (dominance effect). Both, evident dominance and potential complementarity effects are discussed against the background of their interplay with abiotic factors and it is noted that especially precipitation seems to drive trait composition and productivity. Despite methodological shortcomings, the novel approach presented in this paper is considered a step towards a more integrative data-driven BEF debate at the global scale

<p>Since the pre-industrial age, the Earth has been warming at unparalleled rates, and this warming is changing climate and weather, creating a more extreme global hydrological cycle. In this dissertation, I explore how these changes to the hydrological cycle may act ecosystem and community level responses of terrestrial plants in the Midwestern United States. In this region, it is projected that mean annual precipitation (MAP) will increase, but precipitation will become more variable across and within seasons. Ecosystem structure and function are vulnerable to changes in hydrologic patterns, including changes in biogeochemical cycles, plant productivity, and plant community structure and function. In this dissertation, I explore how changes in precipitation will alter these processes using two field experiments, and I suggest potential hypotheses that could explain drought-induced community change.</p><p><br></p><p>In chapter 1, I explore how alterations to seasonal precipitation in the winter and summer act ecosystem and community processes in a temperate deciduous forest. Biogeochemical processes and plant communities are sensitive to changes in abiotic conditions, and these conditions will alter forest succession, particularly juvenile woody plant species. Using a fully factorial experiment, I manipulated winter snowfall and summer precipitation to create wet, dry, and control (ambient conditions) treatments and investigated how changes in seasonal precipitation would act mineralization rates, woody plant recruitment, and understory composition. I found that the effects of winter and summer precipitation on these processes acted independently of one another in this system, and the system was resistant to changes in mineralization rates and understory composition. Woody plant recruitment may be more sensitive to altered precipitation, as recruitment of at least one of the four species planted, Lindera benzoin, was impacted by changes in seasonal precipitation. Snow removal treatments reduced germination and increased summer precipitation decreased the relative growth rate of this species. In the short term, slight changes to woody plant recruitment may have little impact on long-term forest succession, but as these changes persist over longer periods of time, they could alter the direction of succession, which could lead to changes in the understory community composition and nutrient cycling.</p> <p><br></p><p>The second and third chapters explore the effects that drought intensification will have on terrestrial plant communities. Numerous studies have investigated the effects of individual droughts on ecosystem and community responses, but the effects that both the timing and duration of drought have on these responses remain largely unknown. To explore this gap in the literature, I conducted a eld experiment using rainout shelters to reduce growing season precipitation, creating dry periods that varied in length and timing. Drought can impact productivity and diversity in this system, and the timing in which the drought occurs influences these effects. Surprisingly, I found that the length of drought did not affect productivity or community composition.</p> <p><br></p><p>The final chapter introduces the Community Response to Extreme Drought framework CRED), which addresses the potential temporal progression of mechanisms and plant-plant interactions that may lead to community changes during and after a drought. The mechanisms for the temporal evolution of community-level drought responses are not fully understood, but plant-plant interactions, both competitive (-) and facilitative (+), are increasingly being recognized as important drivers of community compositional changes. The CRED framework provides hypotheses for the roles that plant-plant interactions have on drought-induced community change. CRED addresses how system-specific variables and the intensity of drought may influence the strength of plant-plant interactions over time, and ultimately the systems resistance and resilience to drought. </p><p><br></p><p>The results from this dissertation work have revealed that more research needs to be done to fully understand how changes in precipitation regimes and patterns will affect terrestrial ecosystems and plant communities. A better understanding of how ecosystems and communities respond to drought timing and length can help improve climate models and restoration strategies.</p>