La production primaire (PP) dans l'Océan Austral joue un rôle crucial dans la capacité des océans à absorber le carbon atmosphérique. Elle est caractérisée par une forte limitation en Fer et par un cycle saisonnier très marqué, présentant un bloom planctonique en fin d'hiver, plus ou moins intense selon les régions. Ma thèse est centrée sur la compréhension des mécanismes qui contrôlent ce bloom et sa variabilité, ainsi que sur les éléments, présents et futurs, qui contrôlent son intensité. J'ai abordé le premier aspect (phénologie et mécanismes) en mettant en place une approche mécaniste basée sur une nouvelle configuration du modèle biogéochimique PISCES forcé par un environnement physique 1D idéalisé. Cette méthodologie m'a permis de réconcilier les différentes théories sur la formation des blooms aux hautes-latitudes, d'identifier les spécificités du bloom de l'Océan Austral et de proposer des critères adaptés à sa détection dans les observations. En outre, les résultats de cette étude de modélisation ont été confrontés à ceux issues d'une deuxième approche, basée sur des observations satellitaires, ce qui a permis la localisation géographique des différentes phénologies de bloom que j'ai identifiées dans l'Océan Austral. Pour répondre au deuxième aspect (altération et changements futurs), j'ai également suivi une double approche. J'ai d'abord examiné comment les limitations par la lumière et par le fer se combinent, via la variabilité du cycle saisonnier du mélange vertical, et pilotent ainsi la production primaire dans l'Océan Austral actuel à l'aide de la configuration idéalisée présentée plus haut. Dans un deuxième temps, cette analyse a permis d'aider à l’interprétation des variations de PP observées dans les projections climatiques issues de 8 modèles couplés (CMIP5). L'ensemble de mes résultats permet de mieux comprendre les processus physiques et biologiques qui contrôlent la croissance du phytoplancton dans l'Océan Austral et d'appréhender comment la modification de ces processus peut entraîner des altérations de la PP dans une région clé pour l'évolution future du climat. / Primary production (PP) in the Southern Ocean (SO) plays a crucial role on atmospheric carbon uptake. PP in this ocean is highly iron-limited and presents a marked seasonal cycle. Such a seasonal cycle has a strong productive phase in late winter, called bloom, which distribution and intensity is highly variable. My PhD focus on two specific aspects of the PP in the SO: first, the mechanisms that drive such a bloom and its dynamics and, second, the elements able to control the bloom intensity at present and in the future. The first aspect (bloom phenology and mechanisms) was addressed by setting up a mechanistic approach based on a novel model configuration: a complex biogeochemical model (PISCES) forced by a 1D idealised physical framework. This methodology allowed me to conciliate the different bloom formation theories and to identify the SO bloom specificities. Moreover, I proposed how to use different bloom detection criteria to properly identify bloom from observations. Such criteria were then tested in a complementary observation-based approach (with satellite and in-situ data) to characterise different bloom phenologies and its spatial distribution in the SO. The second aspect (bloom intensity and future change) was also addressed by a twofold approach. First, using the 1D model, I studied how seasonal variability of vertical mixing combine light and Fe limitation to drive PP. Secondly, I used such an analysis to interpret PP trends observed in 8 coupled model climatic projections (CMIP5 models). My PhD thesis results allow for a better understanding of the physical and biological processes controlling phytoplankton growth. My conclusions also suggest how an alteration of these processes by Climate Change may influence PP in the whole SO, a key region for future climate evolution.

Doctor Educationis / Analysis of temperature, rainfall and evaporation records over a 44-year period spanning the years 1964 to 2008 indicates changes in the climate around Lake Kariba. Mean annual temperatures have increased by approximately 1.5oC, and pan evaporation rates by about 25%, with rainfall having declined by an average of 27.1 mm since 1964 at an average rate of 6.3 mm per decade. At the same time, lake water temperatures, evaporation rates, and water loss from the lake have increased, which have adversely affected lake water levels, nutrient and thermal dynamics. The most prominent influence of the changing climate on Lake Kariba has been a reduction in the lake water levels, averaging 9.5 m over the past two decades. These are associated with increased warming, reduced rainfall and diminished water and therefore nutrient inflow into the lake. The warmer climate has increased temperatures in the upper layers of lake water, the epilimnion, by an overall average of 1.9°C between 1965 and 2009. The warmer epilimnion has led to a more stable thermocline in the lake, and its upward migration from a previously reported 20 m depth to the current 2 to 5 m depth reported in the lake’s Sanyati Basin. A consequence of the more stable thermocline has been the trapping of greater amounts of nutrients in the deep, cold bottom waters of the lake, the hypolimnion, and this coupled with a shorter mixing (turnover) period is leading to reduced nutrient availability within the epilimnion. This is evident from a measured 50% reduction in nitrogen levels within the epilimnion, with phosphorus levels displaying a much smaller net decline due to localised sources of pollution inflows into the lake. These changes in lake thermal dynamics and density stratification have reduced the volume of the lake epilimnion by ~50%, which includes the well mixed, oxygenated euphotic zone leading to more acidic waters (lower pH) and increased water ionic concentrations (conductivity), and decreased dissolved oxygen levels, which have resulted in a 95% reduction in phytoplankton biomass and a 57% decline in primary production rates since the 1980s. The reduced nitrogen levels especially have contributed to a proliferation of nitrogen-fixing Cyanophyceae, the dominant Cylindrospermopsis raciborskii comprising up to 66% of the total phytoplankton biomass and 45.6% of the measured total phytoplankton cellular concentrations. Also, shifts in seasonal dominance of different phytoplankton groups have been observed in the lake during turnover, the Cyanophyceae having increased in dominance from 60% of the total phytoplankton biomass in the early 1980’s to the current 75%. In contrast, the Bacillariophyceae have declined substantially, from 18% of the total phytoplankton biomass in the early 1980’s to the current 1.7%. The diminished phytoplankton biomass of more palatable phytoplankton, and the proliferation of smaller, less palatable phytoplankton taxa, has resulted in reduced zooplankton biomass and species richness and altered zooplankton species composition. Concentrations of large Cladocera and Copepoda especially have declined substantially in the lake by up to 93.3% since the mid 1970s, with small Rotifera currently comprising 64% of the total zooplankton biomass. The reductions in zooplankton biomass correspond with recorded decreases in catches per unit effort for the sardine Limnothrissa miodon (Kapenta), which have been steadily declining in the lake since 1986.

Diel dissolved oxygen (DO) data were used to characterize seasonal, inter-annual, and longitudinal variation in production and respiration for the James River Estuary. Two computational methods (Bayesian and bookkeeping) were applied to these data to determine whether inferences regarding DO metabolism are sensitive to methodology. Net metabolism was sensitive to methodology as Bayesian results indicated net heterotrophy (production < respiration) while bookkeeping results indicated net autotrophy (production > respiration). Differences in net metabolism among the methods was due to low seasonal variation in respiration using the Bayesian method, whereas bookkeeping results showed a strong correlation between production and respiration. Bayesian results suggest a dependence on allochthonous organic matter (OM) whereas bookkeeping results suggest that metabolism is dependent on autochthonous OM. This study highlights the importance in considering the method used to derive metabolic estimates as it can impact the assessment of trophic status and sources of OM supporting an estuary.

Phytoplankton dynamics and chemical characteristics of the euphotic zone were measured from 1998-2000 (an El Niño/La Niña cycle) at the 5 major stations along Line P. Near-shelf and offshore stations exhibited low seasonality in chlorophyll and moderate seasonality in particulate organic carbon (POC) production. During the 1998 El Niño, June was characterized by low chlorophyll and POC productivity due to nitrate depletion. In contrast, during the 1999 La Niña, and in 2000, higher POC productivity and nitrate occurred in June. During 1999, chlorophyll and POC productivity were similar to 1998 in late summer. Near-shelf biomass was highest in June and lowest in Feb. for the near-shelf stations. High nitrate, low chlorophyll (HNLC) stations had the highest chlorophyll in Feb. followed by June. The coccolithophore assemblage was usually numerically dominated by Emiliania huxleyi, particularly in June. Along the transect, coccolithophore abundance was much higher in June during the 1998 El Niño than in the 1999 La Niña, with Aug./Sept. abundance of both years being very low. Higher abundances were measured along the transect in June and the late summer of 2000 with sporadic ‘blooms’ of >1000 cells ml⁻¹ at some stations. Particulate inorganic carbon (PIC) production was high along the transect during June 1998, and low during both winters, June 1999 and during late summers of 1998 and 1999. There was an increase in diatom biomass and >20 µm POC production during the 1998 El Niño, specifically in the farthest offshore HNLC stations, yet diatoms were rarely found to dominate total phytoplankton biomass or production. However, there were some sporadic examples of anomalously high diatom biomass (carbon and abundance) as well as >20 µm POC production, specifically at P12 in Aug./Sept 2000. The same major diatom species were found throughout Line P (near-shelf, P16, and HNLC). Integrated silica production measured by ³²Si ranged from 0.2 to 4.7 mmol Si m⁻² d⁻¹ between 1999-2000. Silicic acid and nitrate were never limiting at all stations in Feb. and generally increased in concentration along Line P during all seasons. / Science, Faculty of / Botany, Department of / Graduate

Thawing permafrost – in the form of shoreline retrogressive thaw slump events – influence adjacent arctic tundra lake systems near Inuvik, NT. Slump-affected lakes demonstrated lower organic matter and key nutrients such as phosphorus (P), as well as greater water clarity. Key terrestrial permafrost soil indicators such as U, Sr, and Li, were identified to be elevated in slump-affected lakes, while other more biologically important metals (e.g. Fe, Mn) were significantly lower in affected lakes. These physical-chemical changes led to increasing P-limitation for both phytoplankton and periphyton, resulting in lower phytoplankton biomass (Chl-a). Using P as covariate in ANCOVA analysis, slump-affected lakes were also lower in phytoplankton biomass (Chl-a) relative to other study landscapes across the Canadian low-Arctic. Slump-affected lakes also exhibited lower organic matter leading to lower overall Hg concentrations within slump-affected lakes. However, this same reduction in dissolved organic carbon (DOC) has also led to an increase in bioavailable Hg, and increased bioaccumulation of Hg in both periphyton as well as macroinvertebrate species in our most disturbed lakes with DOC concentrations less than 6 and 9 mg DOC/L, respectively. A negative correlation between Hg bioaccumulation and DOC above these concentrations was also observed, and is the typical condition within reference lakes. The legacy impacts of mining were also observed in lakes within 25 km of the Giant Mine roaster stack in the Yellowknife region. Increases in both arsenic (As) and methyl mercury were measured in lakes nearer to the mine, with As concentrations well above water quality guidelines in lakes within 17 km of the roaster stack. This research highlights the necessity of baseline environmental monitoring prior to resource development, as well as the potential for compounded influences of such development within sensitive permafrost regions exposed to thawing.

O objetivo principal desta pesquisa foi estudar a produção primária na Represa de Bariri, que é a segunda do sistema do Médio Tietê. Para atingirmos o objetivo proposto, as coletas foram realizadas em duas estações de amostragem M1, na zona limnética, e M2, na zona litorânea, nos meses de fevereiro, abril, julho e setembro de 1998. A produtividade primária da comunidade fitoplanctônica foi determinada através do método do oxigênio dissolvido. Os valores da produtividade primária líquida da comunidade fitoplanctônica na zona limnética variaram de 122 mgO2.m-2.h-1 (abril) a 2093 mgO2.m-2.h-1 (julho), enquanto que na zona litorânea, variaram entre 157 mgO2.m-2.h-1 (abril) a 861 mgO2.m-2.h-1 (fevereiro). A respiração na comunidade na zona limnética variou entre 18 a 376 mgO2.m-2.h-1 (fevereiro) e na zona litorânea, variou de 0 (abril) a 211 mgO2.m-2.h-1 (fevereiro). A menor produtividade primária, observada em abril, coincidiu com uma menor biomassa. Provavelmente, o fósforo foi o principal fator limitante da produtividade primária nos outros meses de estudos. A proliferação da S estrategista Microcystis spp em fevereiro, nas zonas limnética e litorânea e julho na zona limnética, foi associada à maior estabilidade da coluna d\'água desses períodos. Nas coletas de julho nas zonas litorâneas, abril e setembro, nas zonas limnética e litorânea, houve maior participação de espécies R e C estrategistas, como Rhodomonas lacustris, Auacoseira granulatagranulata, Chlamydomonas spp, Cryptomonas brasiliensis, Cryptomonas tetrapyrenoidosa, Anabaena spiroides e Anabaena circinalis. / Temporal and spacial variations of phytoplankton primary production in Bariri Reservoir (22º06\'S and 48º45\'W, São Paulo State, Brazil) were evaluated by in situ observations in two different areas: one in the limnetic zone (M1) and other in the littoral zone (M2) in February, April, July and September 1998. The phytoplankton primary productivity was determined by the dissolved oxigen method. The values of net primary productivity of the phytoplankton community in M1 varied from 122 mgO2.m-2.h-1 (April) to 2093 mgO2.m-2.h-1 (July), and M2, varied from 157 (April) to 861 mgO2.m-2.h-1 (February). The community respiration M1, varied from 18 (April) to 376 mgO2.m-2.h-1 (February) and M2, varied from zero (April) to 211 mgO2.m-2.h-1 (February).The lowest primary productivity, obtained in April, coincided with the lowest biomass. Probably, phosphorus was the main limitation of the primary productivity on the others study months. The bloom of Microcystis spp (S strategist) in February M1 and M2 and July M1 was related to water column more stable in these periods. In July M1, April M1 and M2 and September M1 and M2, the R and C strategists predominated, such as Rhodomonas lacustri, Aulacoseira granulata granulata, Chlamydomonas spp, Cryptomonas brasiliensis, Cryptomonas tetrapyrenoidosa, Anabaena spiroides and Anabaena circinalis.

This study provides an insight into the food waste in primary production of vegetables with links to the influencing cosmetic preferences from the consumer level. To study farmers, a qualitative approach has been chosen and a quantitative approach has been taken for the consumer. To study these complex dependency relationships in the food chain, system theory has enabled a holistic overall picture based on these two approaches. The purpose is to identify the problem to increase the understanding of the causes and origin of food waste in primary production. Furthermore, the goal is that the empirical evidence will identify some possible development potential to reduce food waste in primary production. Sweden is an import-dependent country as well as Gävleborg County where, however, there are good development opportunities seen in the arable land where an increased degree of self-sufficiency can reduce the vulnerability in the food supply chain. From this perspective there is a need for an optimized food supply chain where food waste is minimized, self-sufficiency increases and import dependency decreases. Reducing production waste is an important part of the transition towards a more sustainable food production where system efficiency improvements are required at the macro, meso and micro levels. In order to answer what the study intends to investigate, a qualitative interview survey was conducted at four local farmers in Gävleborg County. A supplementary questionnaire survey with end consumers was also established to elucidate influential cosmetic preferences, such as an oblique carrot or scurf on a potato peel. The interviews and questionnaire survey has since been anchored in a literature study. The results of the interview study of the four farmers show that the main causes of the occurrence of food waste are due to severely affected factors such as weather conditions, pests, diseases / fungal infestation and even a small number of quality quality / cosmetic preferences. None of the farmers had any established measurements methods for food waste, which makes the statistical data more difficult. The results of the survey show that there is a knowledge gap regarding crops and their origin where more information would mean that the consumer considered the product choice. The survey showed that there was a willingness to pay more to meet specific purchasing preferences where information can broaden these preferences and allow for more sustainable choices. / Denna studie ger en inblick i uppkommet svinn i primärproduktionen av grönsaker med kopplingar till de påverkande kosmetiska preferenserna från konsumentledet. För att studera jordbrukarna har ett kvalitativ angreppssätt valts och för konsumentledet ett kvantitativt tillvägagångssätt. För att studera dessa komplexa beroenderelationer i livsmedelskedjan har systemteorin möjliggjort en holistisk sammantagen bild utifrån dessa två angreppssätt. Syftet är att identifiera problematiken för att öka förståelsen om svinnets orsaker och uppkomst i primärproduktionen. Vidare är målet att det empiriska underlaget ska leda till att identifiera eventuell utvecklingspotential för att minska svinnet i primärproduktionen. Sverige är ett importberoende land och likaså Gävleborgs län där det också finns goda utvecklingsmöjligheter sett till åkerarealen där en ökad självförsörjningsgrad kan minska sårbarheten i livsmedelskedjan. Utifrån den aspekten finns behov av en optimerad livsmedelskedja där svinn minimeras, självförsörjningsgraden ökar och importberoendet minskar. Att minska produktionssvinnet är en viktig del i omställningen mot en mer hållbar livsmedelsproduktion där systemeffektiviseringar behövs på makro-, meso- och mikronivå. För att besvara det studien ämnar undersöka har en kvalitativ intervjuundersökning genomförts hos fyra lokala jordbrukare i Gävleborgs län. En kompletterande enkätundersökning hos slutkonsument har även upprättats för att belysa påverkande kosmetiska preferenser, till exempel en sned morot eller skorv på potatisskal. Intervju- och enkätundersökningen har sedan förankrats i en litteraturstudie. Resultatet från intervjuundersökningen hos de fyra jordbrukarna visar att huvudorsakerna till uppkommet svinn beror på svårpåverkade faktorer som väderförhållanden, skadedjur, sjukdomar/svampangrepp och även en mindre del kvalitetskrav/kosmetiska preferenser. Ingen av jordbrukarna hade några upprättade mätmetoder för svinnet vilket försvårar den statistiska datan. Resultatet från enkätundersökningen visar att det finns en kunskapslucka om grödor och dess ursprung där mer information skulle innebära att konsumenten övervägde produktvalet. Enkäten visade att det finns vilja att betala mer för att tillgodose specifika inköpspreferenser där information kan utöka dessa preferenser och möjliggöra för mer hållbara val.

The capacity of the world’s coastal ecosystems to sequester carbon dioxide (CO2), termed “Blue Carbon,” has been a major focus of research in recent decades due to its potential to mitigate climate change. Vegetated coastal ecosystems such as mangroves, seagrass beds, and salt marshes represent a global area that is one to two orders of magnitude smaller than that of terrestrial forests, yet their contribution to long-term carbon sequestration is much greater per unit-area, in part because of their high productivity and efficiency in trapping suspended matter and associated organic carbon. Despite the value that Blue Carbon (BC) systems offer in sequestering carbon, as well as providing numerous other goods and services, these habitats are being lost at critical rates and require urgent action in order to prevent further degradation and loss. Recognition of the carbon sequestration value of vegetated coastal ecosystems provides a strong argument for their protection and restoration, and global efforts are now underway to include BC ecosystems into global carbon offset budgets, focusing on their optimal management to optimize CO2 sequestration and minimize CO2 emissions. Here, BC was investigated in the Cowichan Estuary in relation to habitat type (salt marsh, eelgrass meadow, non-vegetated mudflats, and oyster shell beds), and habitat degradation. Stored organic carbon (OC) and inorganic carbon (IC) were quantified in the top 20 cm depth of sediment cores, as well as in eelgrass and salt marsh vegetation, and then extrapolated to the areal extent of each habitat type based on a high resolution 1:12,000 scale base map of the estuary. Rates of sedimentation and carbon sequestration were quantified in each habitat type using 210Pb radiometric dating, and organic matter (OM) sources and quality were assessed in each habitat type using δ13C, C/N ratios and photopigment content in the sediments. A particular focus on the lower intertidal zone allowed us to examine the potential impact of industrial activity (log transport and storage) on the estuary’s capacity for carbon storage, as a result of a reduction of suitable habitat for eelgrass and microphytobenthos (MPB). Additionally, IC was quantified in aboveground oyster shell beds and buried oyster shell to assess inorganic storage. Finally, potential valuation of Blue Carbon in the Cowichan Estuary was investigated by comparing carbon sequestration to provincial greenhouse gas (GHG) emission equivalents as well as carbon sequestration in B.C. forests. We found that the salt marsh was the most important carbon reservoir, with a mean per-hectare sediment organic carbon (SOC) stock of 49.1 ± 19.9 Mg C ha-1, total ecosystem carbon stock (TECS) of 5443.75 Mg C, and carbon accumulation rate of 74 ± 23 g C m-2 yr-1. In the other habitats, we found SOC stocks and TECS respectively 19.1 ± 3.78 Mg C ha-1 and 3651.6 ± 72.3 Mg C in the upper mudflats, 16.9 ± 4.36 Mg C ha-1 and 1058.85 Mg C in the lower mudflats, 17.9 ± 1.21 Mg C ha−1 and 324.57 Mg C in the eelgrass meadow, and 9.43 ± 1.50 Mg C ha-1 and 59.4 Mg C in the oyster beds. The eelgrass meadow had a carbon accumulation rate of 38 ± 26 g C m-2 yr-1, while the mudflats could not successfully be dated due to erosion and/or mixing. Furthermore, the salt marsh contained the highest proportion of recalcitrant, terrestrial-derived root material which was more protected from hydrodynamic forces compared to other habitats. No pattern differences were observed between the carbon reservoirs or bulk properties of the log boom area (lower mudflat) compared to the upper mudflat, and thus there was no evidence that the log booms significantly decrease carbon sequestration in the areas where they make frequent contact with the seafloor. However, decreased chlorophyll a (chl a) concentrations in the lower mudflat sediment suggests a possible detrimental impact on microphytobenthos in addition to preventing the recolonization of the seagrass Zostera marina (Z. marina). Carbon stocks in the eelgrass meadow were similar to those of the mudflats. These carbon stocks were lower than global averages but consistent with those recently reported in low Z. marina meadows in the Pacific Northwest. Evidence of significant eelgrass vegetation outwelling necessitates further investigation to elucidate the degree to which these primary products are being decomposed or buried elsewhere in the estuary or open ocean. Since approximately half of the historical salt marsh habitat is currently reclaimed for agricultural and industrial use, consideration should be given to the role of the marsh system as a carbon reservoir in future land-use policy in the Cowichan Estuary. / Graduate / 2022-04-30

Human activities have long had a negative impact on the water quality of freshwater lakes around the world. Utah Lake, located in north-central Utah, has been a subject of such impacts, as the lake experiences recurrent harmful algal blooms during the summer months. Lake warnings and closures have made the public increasingly aware of the ecological and economic impact of these blooms. The objectives of this study were to: 1) compare historical and present-day water quality and ecosystem conditions using environmental data contained in sediment cores, 2) identify whether, and when, Utah Lake transitioned from clearwater to turbid conditions, and 3) incorporate historically-validated lake plant community structure models into establishing forward-thinking lake management targets. The first two objectives will guide lake remediation efforts by providing insight into where lake managers should set our water quality goals and help identify the main driver(s) of eutrophication in Utah Lake. Environmental data from sediment cores indicate a transition in the lake’s recent history, marking a shift to greater phytoplankton dominance, which I attribute to the introduction of invasive common carp around 1881. The third objective provides management and restoration efforts with the water clarity requirements for returning the lake to its historical ecological state.

京都大学 / 0048 / 新制・課程博士 / 博士(農学) / 甲第21163号 / 農博第2289号 / 新制||農||1060(附属図書館) / 学位論文||H30||N5137(農学部図書室) / 京都大学大学院農学研究科森林科学専攻 / (主査)教授 大澤 晃, 教授 北島 薫, 教授 神﨑 護 / 学位規則第4条第1項該当 / Doctor of Agricultural Science / Kyoto University / DGAM