Made available in DSpace on 2014-06-11T19:27:58Z (GMT). No. of bitstreams: 0 Previous issue date: 2001-01-16Bitstream added on 2014-06-13T19:15:42Z : No. of bitstreams: 1 toledo_egh_me_jabo.pdf: 1480955 bytes, checksum: 264147d52e4fdcb0c91216e8ebe11eca (MD5) / Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) / Para este estudo foram avaliados 20 cães adultos sadios (10 machos e 10 fêmeas) e 24 cães adultos (16 machos e 8 fêmeas) com insuficiência renal crônica (IRC), com o objetivo de estudar a proteinúria. Foram empregadas técnicas para determinação quantitativa de proteína da urina e para a separação de suas frações por meio de SDS-PAGE. As quantidades de proteínas presentes na urina de cães sadios foram pequenas, mas o estudo dos perfis eletroforéticos mostrou haver diferenças entre machos e fêmeas. Apesar da ampla variação das concentrações de proteínas entre os animais, o grupo dos portadores de IRC apresentou proteinúria intensa. Os resultados dos portadores de IRC foram agrupados de acordo com o sexo ou em função do tipo de lesão renal predominante, para comparação dos eletroforetogramas. As análises revelaram que os perfis eletroforéticos seguem um padrão para os machos e outro pra as fêmeas. Ainda, o padrão o perfil eletroforético observado quando há predomínio de lesões glomerulares difere do observado quando há predomínio de lesões túbulo-intersticiais. / This trial was conducted in 20 adult health dogs (10 male and 10 female) and in 24 adult dogs (16 male and 8 female) in chronic renal failure (CRF), in order to study urinary protein loss. Determination of total urinary proteins and their separation with SDS-PAGE were employed. The results show that CRF dogs had higher proteinuria when compared to controls and the amount of detected protein had large difference among them. In the CRF there are different patterns of protein bands occurrence and distribution according to the patient sex and predominant renal lesion. The difference between protein bands occurrence of male and female already exists in normal dogs.

Conselho Nacional de Desenvolvimento Científico e Tecnológico / This study aimed to evaluate the electrophoretic pattern of serum proteins in Trypanosoma evansi-infected cats during different periods of infection. Thirteen adult female non-breeding Felis catus were separated into two groups. Cats from the infected group (n=7) were intraperitoneally inoculated with a strain of T. evansi, and cats from the control group (n=6) received a physiological solution. Blood samples were collected at days 0, 7, 21, and 35 for evaluation total protein and protein fractious by electrophoresis. Albumin (P < 0.01), alpha-2 globulin and gamma globulin (P < 0.05) concentrations were statistically different from the seventh day post-inoculation. Beta globulin levels were increased from day 21 (P < 0.05). Alpha-1 globulin fraction did not statistically differ. These results indicate that the infection by T. evansi in cats alters the serum protein electrophoretic profile. Thus, the increase in γ-globulin fraction is a common finding in infection by T. evansi, caused mainly by increased IgM and IgG. However, the α2-globulin subfraction showed increase throughout the experimental period and, possibly, the proteins of this subfraction are directly involved in host defense against flagellate. Thereby, further studies is essentials to define the true role of each protein fraction in the control of infection. / O objetivo deste estudo foi avaliar o perfil eletroforético das proteínas séricas de gatos experimentalmente infectados pelo Trypanosoma evansi, em diferentes períodos de infecção. Utilizaram-se 13 felinos (Felis catus) adultos, fêmeas e sem raça definida. Os gatos foram divididos em dois grupos homogêneos, sendo um o grupo controle (seis animais) e o outro o grupo infectado (sete animais). Os sete animais foram inoculados por via intraperitoneal, com um isolado de T. evansi. Nos outros seis animais, foi administrada pela mesma via solução fisiológica. Realizaram-se coletas de sangue nos dias 0, 7, 21 e 35 para avaliação das proteínas totais e fracionamento protéico através da técnica de eletroforese. Observou-se que os valores de albumina (p < 0,01), alfaglobulina 2 e gamaglogulinas (p < 0,05) diferiram significativamente a partir do sétimo dia de infecção e que as betaglobulinas (p < 0,05) apresentaram diferença estatística a partir do 21° dia. Não houve diferença estatística na fração alfaglobulina 1. Pode-se concluir que a infecção pelo T. evansi em gatos acarreta mudanças no perfil eletroforético das proteínas séricas. Assim, o aumento na fração γ-globulina é um achado frequente na infecção pelo T. evansi, causado principalmente pelo aumento da IgM e IgG. Contudo, a subfração α2-globulina apresentou aumento em todo o período experimental e , possivelmente, as proteínas dessa fração estejam diretamente envolvidas na defesa do hospedeiro contra o flagelado. Desse modo, é fundamental que novos estudos sejam realizados para definir o verdadeiro papel de cada proteína dessa fração no controle da infecção.

A Distrofia Muscular de Duchenne (DMD) é uma doença genética recessiva e hereditária, ligada ao cromossomo X, caracterizada pela ausência ou insuficiência da proteína distrofina no sarcolema das fibras musculares. É uma doença muscular progressiva, que afeta um em cada 3.500 meninos. Atualmente, os cães da raça Golden Retriever, portadores da distrofia muscular do Golden Retriever (GRMD), que exibem mudanças musculares, patogenia, bem como o fenótipo, comparáveis aos vistos nos casos de DMD, vêm sendo considerados o melhor modelo animal para o estudo da DMD. Nos GRMDs a fraqueza muscular inicia-se a partir do segundo mês de vida e é progressiva, portanto, a expectativa de vida destes cães é muito reduzida. Histologicamente, os músculos mostram necrose, fibrose e regeneração. As manifestações patológicas da GRMD já se iniciam na vida intra-uterina com o desenvolvimento de lesões nos músculos da língua. A hipertrofia da língua está associada com disfunção da faringe e do esôfago, o que resulta em disfagia,regurgitação e sialorréia. O objetivo desse estudo foi avaliar no modelo animal, utilizando cães golden retrievers normais e afetados pela distrofia muscular de duchenne, a proteína na urina e o peso molecular das proteínas urinárias, além de acompanhar a bioquímica sérica. Durante quatro meses seis cães machos com distrofia muscular e idade entre dois e seis anos tiveram amostras de urina coletadas a cada duas semanas e amostras de sangue coletadas uma vez por mês, e três cães normais foram avaliados para estabelecer uma comparação. Nas amostras sanguíneas foram realizados exames para avaliar a função renal e a urina foi usada para a mensuração de proteína, creatinina e a realização da eletroforese. Não foi encontrado indício de lesão renal nos exames realizados nas amostras de sangue e também na relação proteína:creatinina nas amostras de urina. Na análise das eletroforeses, foi encontrado diferenças na quantidade de bandas protéicas apresentadas entre os animais normais e os cães com distrofia muscular. Os cães com distrofia apresentam uma maior distribuição de bandas de alto peso molecular que não são encontradas nos cães normais, além de terem ainda uma maior quantidade de proteínas de baixo peso molecular. Apesar de se manterem dentro dos parâmetros estabelecidos para lesão renal, os cães com distrofia, tem bandas protéicas que não são vistas em animais normais e que mantém a integridade do parênquima renal. / Duchennes Muscular Dystrophy (DMD) is a lethal childhood disease, a X-linked recessive disorder, caused by mutations of the dystrophyn gene, a protein that has a vital role in maintaining muscle structure and function. DMD is a progressive muscular disease, which affects 1:3500 born boys. At this moment, the dogs with Golden Retriever Muscular Dystrophy (GRMD), are the best animal model to study DMD. GRMD dog exhibits muscle changes, pathogenesis and phenotype comparable with the DMD boys. In GRMDs, the muscular weakness beginning with 60 days of life and this is progressive. Histologically, the muscles show necrosis, fibrosis, degeneration and regeneration. The pathogenesis manifests in utero with the development of lingual muscle lesions. The tongue hypertrophy is associated with pharyngeal and esophageal dysfunction, and results in dysphagia, regurgitation and drooling. The aim of this research was investigates in normal dogs and in dogs affected by the Duchene muscular dystrophy the protein in the total urinary proteins and their separation with SDS-PAGE. During four months, six male dogs between two and six years were evaluated. The blood was examined once a month and the urine twice a month, three normal dogs were examined to establish a comparison between both. In blood samples were carried out tests to evaluate renal function and urine was used for the measurement of protein, creatinine and for electrophoresis. We found no evidence of kidney damage in tests performed on blood samples and also in the protein: creatinine ratio in urine samples. In the analysis of electrophoresis, we found differences in the amount of protein bands presented between normal dogs and dogs with muscular dystrophy. GRMD dogs have a wider distribution of bands with high molecular weight, which are not found in normal dogs. In addition they have a greater amount of protein with low molecular weight. While staying within the parameters established for renal injury, the dogs with dystrophy, has protein bands not seen in normal animals that maintains the integrity of the renal parenchyma.

No description available.

No description available.

Die vorliegende Arbeit beschäftigte sich mit zwei Methoden zur Diagnostik der Aspergillose bei Greifvögeln, um neue Erkenntnisse über die Aussagekraft dieser nicht invasiven Diagnostika zu gewinnen. In der ersten Studie wurden bei ausschließlich Aspergillose-positiven Falken (Falco spp.) (n = 110) spezifische Röntgenzeichen an digital erstellten Röntgenbildern systematisch ermittelt und mit den typischen Röntgenzeichen von Papageien mit Erkrankungen des unteren Respirationstrakts verglichen. In der zweiten Studie wurden gesunde (n = 73) und an Aspergillose erkrankte (n = 32) Jagdfalken (Falco spp.) mittels Serumelektrophorese untersucht, Referenzwerte für die gesunden Falken erstellt und mit den Werten der erkrankten Falken verglichen. In beiden Studien stammten die Tiere aus dem Patientengut derselben Klinik. Bei der Auswertung von Röntgenbildern Aspergillose-positiver Falken wurden hauptsächlich subtile Röntgenzeichen beschrieben. Von den 110 Tieren waren 29 (26,4 %) radiologisch vollkommen unauffällig. Die am häufigsten beschriebenen Befunde waren inhomogene Verschattungen des Lungenfeldes (38,2 % laterolateral [ll]) und strichförmige Verschattungen der kaudalen Lungengrenze (30,0 % ll) sowie inhomogene (34,5 % ll; 29,1 % ventrodorsal [vd]) und streifige (26,4 % ll) Verschattungen der Luftsäcke, aber auch eine schlechte Abgrenzbarkeit des Herzschattens in der laterolateralen Projektion (42,7 %). Im Vergleich zu an Papageien mittels konventioneller Projektionsradiographie durchgeführten Studien war der Anteil an subtilen Röntgenzeichen geringer und der Anteil an massiven Röntgenzeichen größer. Verglichen mit Referenzwerten diverser Greifvogelspezies aus der Literatur zeigten die Referenzwerte der gesunden Falken dieser Studie unter Verwendung des hochauflösenden Elektrophoresesystems SAS 1 unit (Helena, Saint Leu La Forest, Frankreich) relativ niedrige Gesamtproteinwerte und relativ hohe Präalbuminwerte auf. Bei den 32 Serumproben der an Aspergillose erkrankten Falken ließ sich im Gegensatz zu den 73 Serumproben der gesunden Falken ein signifikant erniedrigter Totalalbuminwert (Albumin + Präalbumin) sowie ein hoch signifikant erniedrigter Präalbuminwert mittels Serumelektrophorese feststellen. Obwohl die Falken meist schon in frühen Krankheitsstadien vorgestellt wurden und die Diagnostik in diesen Stadien besonders schwierig ist, konnten mit beiden Untersuchungsmethoden von gesunden Tieren differierende Befunde erhoben werden. Diese in Zusammenhang mit Aspergillose erhobenen Befunde wichen jedoch teilweise deutlich von den in der Literatur beschriebenen „typischen“ Befunden bei an Aspergillose erkrankten Vögeln ab. Dies kann damit erklärt werden, dass die meisten vergleichbaren Studien an als Heimtiere gehaltenen Papageien oder gefangen gehaltenen Zoovögeln (von Falken abweichende Haltungsform, Anatomie und Physiologie sowie Leistungsniveau) und mit unterschiedlicher Technik (digitale versus konventionelle Projektionsradiographie, unterschiedliche Elektrophoresesysteme und Verwendung von Serum anstelle von Plasma) durchgeführt wurden. Die digitale Projektionsradiographie kann aufgrund ihrer schonenden, einfachen und schnellen Durchführbarkeit sowohl den Vogelmedizin spezialisierten Institutionen als auch den Kleintierpraktikern uneingeschränkt empfohlen werden. Die Proteinelektrophorese kann bis zum heutigen Zeitpunkt nur bedingt für den Praktiker, wohl aber für spezialisierte Institutionen bei Beachtung aller Besonderheiten als zusätzliches Diagnostikum empfohlen werden. / The present study concentrates on two methods for diagnosing birds of prey with aspergillosis with the intent to increase the knowledge of the validity of these non-invasive diagnostic methods. In the first study, specific radiographic signs of digitally created radiographs of falcons (Falco spp.) which were exclusively positive for aspergillosis (n = 110) were systematically analyzed and compared to the typical radiographic signs of parrots with diseases of the lower respiratory tract. In the second study, healthy falcons (n = 73) and falcons affected with aspergillosis (n = 32) (Falco spp.) were examined by using serum protein electrophoresis in order to create reference values for healthy falcons and compare them with the values of the affected falcons. In both studies, the animals were patients of the same clinic. While evaluating the radiographs of the falcons with aspergillosis, mainly subtle radiographic signs were described. Radiographically within normal limits were 29 (26.4%) of the 110 animals. The most commonly reported findings were inhomogeneous increased radiodensity of the lung area (38.2% laterolateral [ll]), line-shaped shadowings of the caudal lung border (II 30.0%) as well as an inhomogeneous (34.5% ll, 29.1% ventrodorsal [vd]) and streaky (26.4% II) radiodensity of the air sacs, but also a poor delineation of the cardiac silhouette in the laterolateral projection (42.7%). Compared to studies performed on parrots by conventional radiography, the portion of subtle radiographic signs was lower and the portion of severe signs was higher. Compared to reference values of various raptor species from the literature, this study, which made use of the high-resolution electrophoresis SAS 1 unit (Helena, Saint Leu La Forest, France), revealed relatively low values for total proteins and relatively high values for prealbumin in the reference values of the healthy falcons. The 32 serum samples of the falcons suffering from aspergillosis showed a significantly reduced total albumin (albumin + prealbumin) level and a highly significantly reduced prealbumin level compared to the 73 serum samples of healthy falcons. Although the falcons were for the most part already brought to the clinic in one of the early stages of the disease, when diagnosing aspergillosis is particularly difficult, both examination methods revealed different results for the healthy and diseased animals. However, the findings related to aspergillosis were in some cases significantly different from those described in the literature as the \"typical\" findings in birds suffering from aspergillosis. This can be explained by the fact that most of the comparable studies were conducted with parrots held as pets or with captive zoo birds (when husbandry, anatomy and physiology, as well as performance level are different from falcons) and with a different technique (digital versus conventional radiography, different electrophoresis systems and the use of serum instead of plasma). The digital radiography can be fully recommended for specialized medical institutions for avian medicine as well as for small animal practitioners because of its easy, rapid and gentle feasibility. To date, the protein electrophoresis can only be recommended with restrictions for practitioners, however for specialized institutions, it can be useful as additional diagnostic tool if all its specific features are taken into account.

La leucémie lymphoïde chronique (LLC) est le lymphome avec phase circulante le plus fréquent chez l’adulte dans les pays occidentaux. Elle est caractérisée par une grand hétérogénéité dans son évolution naturelle avec des formes indolentes ne nécessitant jamais de traitement spécifique et des formes agressives requérant une chimiothérapie rapidement après le diagnostic. Dans ce travail de thèse, nous avons posé la question du rôle des anomalies moléculaires et en particulier des gènes des immunoglobulines dans l’histoire naturelle de la maladie, tant au plan mécanistique que pour le pronostic. Nous avons étudié trois remaniements atypiques impliquant un gène des immunoglobulines et un partenaire inconnu dans la LLC/lymphome lymphocytique. Les points de cassure ont pu être identifiés et nous ont permis de mettre en évidence l’implication dans 2 cas d’ARN longs non codants en 17q25 et 8q24. De plus, deux cas ont des points de cassure dans une région chromosomique restreinte (espacés de 200 kb en 17q25). Il pourrait s’agir d’un locus important dans la lymphomagénèse, de même que pour la région 8q24 contenant MYC et de nombreux gènes non codants jusqu’ici peu explorés. Par ailleurs, dans l’ère du séquençage haut débit, de nombreux marqueurs pronostiques moléculaires sont décrits dans la LLC. Nous avons démontré que l’électrophorèse des protéines sériques normale (immunoglobulines polyclonales sans hypogammaglobulinémie) au diagnostic, un marqueur simple et peu couteux, reste dans l’ère du NGS, un marqueur indépendant de bon pronostic dans la LLC. Sa combinaison avec un statut IGHV muté identifie un groupe de patients qui n’auront probablement jamais besoin de traitement spécifique. Ce travail nous a conduit à mettre au point un outil performant de détection des anomalies de nombre de copies par séquençage haut débit. Celui-ci permet la mise en évidence de disomies uniparentales dont la signification pronostique n’est actuellement pas établie dans la LLC. Ces anomalies pourraient être le reflet d’une instabilité chromosomique et il serait intéressant d’étudier leur impact pronostique dans la LLC. / Chronic lymphocytic leukemia (CLL) is the most frequent lymphoma with leukemic phase in the elderly in Western countries. It is characterized by a great heterogeneity in its natural history with indolent forms never requiring any specific treatment and aggressive forms needing chemotherapy rapidly after diagnosis. In this work of thesis, we asked the question of the role of molecular abnormalities, and in particular of the immunoglobulin genes in the natural history of the disease, at mechanistic level and for prognosis. We studied three atypical rearrangements implicating an immunoglobulin gene and an unknown partner in CLL/lymphocytic lymphoma. The breakpoints have been identified and the implication of long non coding RNA was highlighted in two cases in 17q25 and 8q24. Moreover, two cases harboured breakpoints in a restricted chromosomic region (200 kb spaced in 17q25). It could be an important locus in lymphomagenesis, as is 8q24 region containing MYC and numerous other non coding genes poorly characterized by now. Furthermore, in high throughput sequencing (HTS) era, many molecular prognosis markers have been described in CLL. We demonstrated that normal serum protein electrophoresis (polyclonal immunoglobulin without hypogammaglobulinemia) at diagnosis, a simple and unexpensive marker, stays in HTS era an independent good prognosis marker in CLL. Its combination with unmutated IGHV genes status identifies a group of patients who will probably never require any specific treatment. This work led us to develop an efficient tool to detect copy number variations by THS. This tool allows to highlight uniparental disomy whose prognosis signification is not established in CLL. These abnormalities could reflect chromosomal instability and it could be interesting to study their prognosis impact in CLL.

Mitochondriopathien sind Multisystemerkrankungen die durch verschiedene Defekte in den Energie (ATP) produzierenden Stoffwechselwegen der Mitochondrien verursacht sind. Will man Mitochondriopathien auf molekularer Ebene diagnostizieren, stößt man auf folgende Schwierigkeiten: (A) Ungefähr 1000 Gene sind an der Biogenese des Mitochondriums beteiligt. Die Dysfunktion jedes einzelnen dieser Gene kann potentiell zur Mitochondriopathie führen. (B) Mitochondriale Proteine werden durch zwei Genome, durch die mitochondriale und durch die nukleäre DNA kodiert. (C) Die klinischen Symptome der Patienten weisen selten auf die molekulare Diagnose, da der Phänotyp oft nur auf einem sekundären Energiemangel beruht. In der Regel besteht keine sichere Genotyp-Phänotyp-Relation. Mit den gegenwärtig zur Verfügung stehenden Methoden lassen sich bei nur 20% der Patienten Mutationen finden. Wir wollten daher eine neue Screening-Methode entwickeln, mit deren Hilfe wir hoffen, die Aufspürungsrate für mitochondriale Mutationen zu erhöhen. Die Gesamtheit der Proteine einer Organelle oder einer ganzen Zelle (ihr "Proteom") stellt das Verbindungsglied zwischen Geno- und Phänotyp dar. Aus diesem Grunde wollten wir das mitochondriale Proteom von gesunden Kontrollpersonen und von Patienten mit Mitochondriopathien untersuchen. Protein-Muster, die zwischen diesen beiden Gruppen abweichen, könnten die Aufmerksamkeit auf Gene und Proteine richten, die an der Entstehung des Krankheits-Phänotyps beteiligt sind. Um solch eine vergleichende Studie durchzuführen, muß zunächst eine Referenzkarte des normalen mitochondrialen Proteoms erstellt werden. In meinem Dissertationsprojekt habe ich diese grundlegende Arbeit durchgeführt und zahlreiche Proteine auf der Proteomkarte menschlicher Mitochondrien identifiziert, die aus Epstein-Barr-Virus-transformierten lymphoblastoiden Zellen gewonnen worden waren. Ich wählte diese Zellsorte als Untersuchungsmaterial, da sie nicht nur einfach von Patienten gewonnen werden, sondern auch potentiell permanent wachsen kann. Dies erlaubt die Züchtung einer hohen Zellzahl ohne übermäßigen Aufwand. Ich optimierte ein Protokoll zur Zentrifugation in einem hybriden Gradienten, mit dem genug gereinigte Mitochondrien aus 108 Zellen gewonnen werden konnten. Für die Referenzkarte benutzte ich die lymphoblastoide Zellline einer gesunden Kontrollperson. Die Methode der Wahl zur Proteinidentifikation in Proteom-Projekten ist die zweidimensionale Proteinelektrophorese gekoppelt mit der MALDI-TOF-Massenspektrometrie. Ich entdeckte mehr als 400 Punkte in meinem silbergefärbten zweidimensionalen Gel und analysierte die 141 stärksten Punkte nach in-gel Trypsin-Verdau und anschließender MALDI-TOF-Massenspektrometrie in einem Verfahren, das als "Peptide Mass Fingerprinting" (Peptidmassen-Fingerabdruck) bezeichnet wird. Mit Hilfe entsprechender Datenbanken konnte ich schließlich 115 verschiedene Proteinpunkte (entsprechen 95 verschiedenen Proteinen) identifizieren. 90 dieser Punkte (entsprechend 74 verschiedenen Proteinen) waren sicher mitochondrialer Herkunft und sind Komponenten aller wesentlichen im Mitochondrium lokalisierten Stoffwechselwege. 16 der 74 identifizierten mitochondrialen Proteine gehören zur Atmungskette. Obwohl 18 mitochondriale Proteine in der Datenbank SWISS-PROT als "Membran-assoziiert" annotiert sind, identifizierte ich nur vier Proteine mit sicheren Transmembrandomänen. Ich entdeckte keine der 13 durch die mitochondriale DNA kodierten Proteine, die alle stark hydrophobe Membranproteine sind. Andere Forscher sind bei dem Versuch diese Proteine zu identifizieren, auf die gleichen Schwierigkeiten gestoßen. Mit meiner Dissertationsarbeit habe ich unsere eigene Datenbank und Referenzkarte des mitochondrialen Proteoms lyphoblastoider Zellen erstellt. Diese Daten ermöglichen nun die Analyse des mitochondrialen Proteoms von Patienten. Meine weiteren Untersuchungen auf diesem Gebiet werden sich nun auf die genetische Variabilität des Proteoms gesunder Kontrollpersonen und auf das Proteom der Patienten mit Mitochondriopathien beziehen. / Mitochondrial disorders are multisystem diseases that can be caused by any defect in the energy (ATP) generating pathways in the mitochondria. The difficulty in diagnosing mitochondrial diseases on the molecular level arises from several obstacles: (A) About 1000 genes are involved in the biogenesis of mitochondria. The dysfunction of each of them may potentially cause mitochondriopathy. (B) The mitochondrial proteins are encoded by two genomes: the mitochondrial DNA and the nuclear DNA. (C) The clinical symptoms of the patients rarely suggest a molecular diagnosis since in most cases, the phenotype is a secondary phenomenon to energy depletion. Generally there is no genotype-phenotype relation. Based on current diagnostic methods in only 20% of the patients a mutation can be found. We therefore wanted to develop a new screening method by which we hope to increase the identification rate. Since the numerous proteins of an organelle or of a whole cell (its "proteome") connect the genotype with the phenotype, we set out to study the proteome of the mitochondrion in healthy individuals and in patients with mitochondrial diseases. Deviating protein patterns between the two individuals could direct the attention to disease-specific proteins and genes, which might be involved in the expression of a disease-phenotype. In order to perform such a comparison I first had to establish a normal reference map. In my dissertation project I performed this basic task and identified numerous mitochondrial proteins on the proteome-map of human mitochondria, which had been extracted from lymphoblastoid cells. I selected Epstein-Barr-Virus-transformed lymphoblastoid cells as samples not only because they are easily obtained from patients, but also due to their potential permanent growth. This approach allows the cultivation of high cell numbers without excessive expenditure of work and cost. I optimized a protocol for hybrid gradient centrifugation, by which enough mitochondria can be purified from 108 cells. I used a cultured lymphoblastoid cell line from a normal control patient and isolated mitochondria from it by using hybrid gradient centrifugation. In proteomics the combination of the high-resolution two-dimensional electrophoresis and matrix assisted laser desorption/ionization-time-of-flight-mass spectrometry (MALDI-TOF-MS) is currently the method of choice for protein identification. I detected more than 400 spots in a silver-stained two-dimensional gel. I analyzed the 141 strongest spots of it by trypsin in gel digestion and subsequent MALDI-TOF mass spectrometry in a process termed "peptide mass fingerprinting". After database search, I finally identified 115 protein spots (corresponding to 95 different proteins), 90 of which (corresponding to 74 different proteins) are of confirmed mitochondrial origin. These identified proteins are components of the main biological pathways located in the mitochondrion. 16 of the 74 identified mitochondrial proteins belong to the respiratory chain. Despite the fact that 18 mitochondrial proteins are annotated in the SWISS-PROT-database as "membrane associated proteins", only four of them have clear transmembrane domains. None of the proteins encoded by the mitochondrial DNA could be detected. All of them are hydrophobic membrane proteins. A similar difficulty in resolving these proteins was encountered by other research groups. With my dissertation I established our own database and reference map of the mitochondrial proteome of lymphoblastoid cells. These data will facilitate the analysis of the mitochondrial proteome in patients. My future research based on this dissertation will mainly focus on the genetic variation of the proteome of healthy individuals and on patients with mitochondrial diseases.

Τρεις ευρέως χρησιμοποιούμενες μέθοδοι τυποποίησης, μια βιοχημική (API20NE), μια φαινοτυπική (SDS-PAGE) και μια μοριακή (RAPD) χρησιμοποιήθηκαν για την ταυτοποίηση και ταξινόμηση 160 περιβαλλοντικών ψευδομονάδων που απομονώθηκαν από το υδάτινο περιβάλλον της Νοτιοδυτικής Ελλάδας και συγκεκριμένα από εμφιαλωμένα νερά (46%), νερά δικτύου ύδρευσης (16%), κολυμβητικών δεξαμενών (9%) και θαλασσών (29%). Οι ψευδομονάδες ταυτοποιήθηκαν με βάση το βιοχημικό τους αποτύπωμα δια μέσου του συστήματος ΑΡΙ20ΝΕ, και στη συνέχεια υποβλήθηκαν σε ηλεκτροφόρηση των ολικών πρωτεϊνών τους (SDS-PAGE) και σε ανάλυση του γενετικού τους υλικού με τη μέθοδο RAPD (Random Amplified Polymorphic DNAs) με χρήση δύο διαφορετικών δεκαμερών εκκινητών (primers). Το σύστημα API20NE ταυτοποίησε το 88% των στελεχών διακρίνοντας 14 ομάδες-είδη, ενώ η SDS-PAGE ταξινόμησε το 98.1% σε 20 ομάδες και η RAPD το 94% των στελεχών σε 22 και 34 ομάδες, με εκκινητή τον OPA-13 και τον OPD-13 αντίστοιχα. Η ταξινόμηση προέκυψε με εφαρμογή της ανάλυσης κατά συστάδες (cluster analysis) των αποτυπωμάτων (πρωτεϊνικών και γενετικών) που παρήγαγαν τα στελέχη. Τα 20 στελέχη που δεν ταυτοποιήθηκαν σε επίπεδο είδους με το API20NE, ταξινομήθηκαν με την SDS-PAGE σε ποσοστό 100%, ενώ με την RAPD σε ποσοστό 90%. Οι τρεις μέθοδοι συγκρίθηκαν ως προς την επαναληψιμότητα (reproducibility), την ικανότητα τυποποίησης (typeability) και τη διακριτική ικανότητα (discriminatory power). Την μεγαλύτερη επαναληψιμότητα έδωσαν το API20NE και η RAPD με τον εκκινητή OPA-13, την μεγαλύτερη ικανότητα τυποποίησης η SDS-PAGE, ενώ τη μεγαλύτερη διακριτική ικανότητα έδωσε η RAPD με τον εκκινητή OPD-13. Η πλέον σωστή ταξινόμηση, όπως προέκυψε από τη διακριτή ανάλυση, επιτεύχθη με τη μέθοδο SDS-PAGE. Η παρούσα εργασία αποδεικνύει ότι τα βιοχημικά συστήματα ταυτοποίησης (όπως το API20NE) μπορούν να χρησιμοποιηθούν με αξιοπιστία μόνο για αδρή αναγνώριση των περιβαλλοντικών ψευδομονάδων. Πληροφορίες σε βάθος για την ταυτότητα και τη φύση τους μπορούν να εξαχθούν με τη περαιτέρω εφαρμογή ηλεκτροφορητικών και μοριακών μεθόδων. Δεδομένης της ευρείας διασποράς, της ετερογένειας και της, έστω και δυνητικής, παθογόνου δράσης των ψευδομονάδων, είναι σημαντικό, από πλευράς δημόσιας υγείας, ο προσδιορισμός της ταυτότητάς τους να γίνεται με συνδυασμένη εφαρμογή βιοχημικών, ηλεκτροφορητικών και μοριακών μεθόδων ώστε να καθίσταται δυνατή η αναγνώριση στελεχών που μπορούν να αποτελέσουν αιτιολογικούς παράγοντες ασθενειών, ιδιαίτερα σε ομάδες υψηλού κινδύνου. / Three broadly used typing techniques, one biochemical (API20NE), one phenotypic (SDS-PAGE) and one molecular (RAPD), were employed for the identification and taxonomy of 160 environmental pseudomonas isolated from the aquatic environment in Southwestern Greece. In particular, the isolates were obtained from bottled waters (46%), potable waters (16%), waters from swimming pools (9%) and seawaters (29%). The isolates were identified by the system API20NE and then subjected to whole-cell protein electrophoresis (SDS-PAGE) and Random Amplified Polymorphic DNAs (RAPD) using two 10-mer primers. The API20NE system identified 88% of the whole bacterial population and classified them in 14 species, while SDS-PAGE classified 98.1% of the isolates in 20 groups and RAPD classified 94% of the strains in 22 groups using the primer OPA-13 and 34 groups using the primer OPD-13. The classification was achieved by applying cluster analysis in the protein or RAPD fingerprints of the isolates. Twenty isolates that could not be identified by the API20NE system, at least to the species level, were classified by the SDS-PAGE and the RAPD in a percentage of 100% and 90%, respectively. The reproducibility, typeability and discriminatory power of the three methods were compared to evaluate their application. The API20NE and the RAPD assay with primer OPA-13 showed better reproducibility in comparison with the other methods; the higher typeability was achieved by the SDS-PAGE assay while the higher discriminatory power was that obtained by the RAPD method with the primer OPD-13. The SDS-PAGE gave the higher percentage of “correctly classified” isolates, as it was assessed by discriminant analysis. This study shows that the rapid identification systems, such as the API20NE, may be reliable only for a rough characterization of environmental Pseudomonas. In order to acquire further information about their identities, other phenotypic and molecular techniques have to be applied. Given the ubiquity, heterogeneity and pathogenicity, either established or potential, of the environmental pseudomonas it is important, from a public health point of view, to monitor the identities of environmental Pseudomonas isolates using the combination of specific methods, so as to be possible for strains, which can serve as causative agents of diseases, especially in high risk population, to be recognizable.