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Cancer therapies are often limited by bulk and cellular barriers to transport. Nanoparticle or chemotherapeutic compound intracellular transport has implications in understanding therapeutic effect and toxicity. The scope of this thesis was to study the intracellular transport of carbon nanohorns and to improve the efficacy of various chemotherapeutic agents through increased intracellular transport. In the first study, fluorescent probes (quantum dots) were conjugated to carbon nanohorns to facilitate the optical visualization of the nanohorns. These hybrid particles were characterized with transmission electron microscopy, electron dispersive spectroscopy and UV-VIS/FL spectroscopy. Their cellular uptake kinetics, uptake efficiencies, and intracellular distribution were determined in three malignant cell lines (breast – MDA-MB-231, bladder – AY-27, and brain – U87-MG) using flow cytometry and confocal microscopy. Intracellular distribution did not vary greatly between cell lines; however, the uptake kinetics and efficiencies were highly dependent on cell morphology. In the second study, the efficacy of various chemotherapeutic agents (i.e., doxorubicin, cisplatin, and carboplatin) was evaluated in AY-27 rat bladder transitional cell carcinoma cells. In the future, severe hyperthermia and chemothermotherapy (chemotherapy + hyperthermia) will also be evaluated. Doxorubicin and cisplatin compounds were more toxic compared to carboplatin. Hyperthermia has previously shown to increase the cellular uptake of chemotherapeutic agents; therefore, chemothermotherapy is expected to have synergistic effects on cell death. This work can then be translated to carbon nanohorn-based laser heating to generate thermal energy in a local region for delivery of high concentrations of chemotherapeutic agents. Although these two concepts are small pieces of the overall scope of nanoparticle-based therapies, they are fundamental to the advancement of such therapies. / Master of Science

Ce travail porte sur différentes méthodes de détection de protéines par des anticorps (Acs) marqués par des boîtes quantiques (QD, « quantum dots »). La première partie de la thèse porte sur le développement et l'optimisation de méthodes de conjugaison d'Acs polyclonaux à des QDs. Une étude de 2007 avait démontré que les conjugués anticorps-quantum dots (Acs-QDs) commerciaux ne présentent que de très rares anticorps fonctionnels à leur surface [Pathak et al., 2007]. Nous avons donc : (i) développé des conditions de réduction ménagée des ponts disulfures des Acs en utilisant soit du dithiothreitol, soit du 2-mercapotethanolamine, (ii) purifié les fragments d'Acs fonctionnels grâce à une colonne d'affinité, (iii) conjugué ces fragments fonctionnels d'Acs aux QDs en utilisant l'agent de liaison amine-thiol SMCC et (iv) développé une méthode de purification des conjugués sur gel d'agarose afin d'éliminer les fragments d'Acs non conjugués et les QDs libres. Des tests en cytométrie en flux ont permis de déterminer l'efficacité des conjugués pour détecter l'expression de la molécule CD4 à la surface de lymphocytes T humains. Un marquage de CD4 réalisé avec des conjugués préparés selon notre méthode s'avère être cinq fois plus sensible qu'en utilisant des conjugués réalisés selon les recommandations commerciales. Une autre méthode de préparation des Acs pour la conjugaison aux QDs a été testée : l'ajout de groupements fonctionnels sulfhydriles sur des amines primaires grâce au N-succinimidyl S-acetylthioacetate (SATA). Cependant, cette méthode ne permet pas d'avoir un contrôle précis du nombre ni de l'emplacement des groupements fonctionnels sulfhydriles ainsi ajoutés. Les tests de conjugaison aux QDs qui ont été réalisés avec ces Acs-SH, en utilisant l'agent de liaison SMCC, a entraîné la formation d'agrégats de taille variable. Cette méthode a donc été abandonnée.La seconde partie de la thèse porte sur la démonstration de la faisabilité et l'optimisation d'un marquage de l'antigène carcino-embryonnaire (CEA, « carcinoembryonic antigen ») humain à la surface de lignées cellulaires murines avec un anticorps simple domaine (sdAb) anti-CEA biotinylé détecté grâce à des conjugués streptavidine-QDs commerciaux et analysé par cytométrie en flux. Ces sdAbs ont été biotinylés selon deux approches : (i) avec des agents de biotinylation chimique qui permettent d'ajouter une biotine sur les amines primaires (biotinylation in vitro) et (ii) par une enzyme lors de leur production par E. coli (biotinylation in vivo). La détection du CEA humain à la surface des 100 000 cellules (lignées cellulaires murine MC38 et MC38-CEA) par ces sdAbs biotinylés a été testée en cytométrie de flux puis comparée à celle obtenue par un anticorps monoclonal biotinylé in vitro. Les résultats ont démontré que les sdAbs biotinylés ont une sensibilité de détection similaire que la biotinylation soit réalisée in vitro ou in vivo. Par contre, la sensibilité de la détection du CEA est environ cinquante fois meilleure en utilisant des sdAbs biotinylés (0,6 fmol d'anticorps sont nécessaires pour détecter le CEA) qu'avec des anticorps monoclonaux biotinylés (33 fmol). / We have been working on different ways to detect proteins with antibodies (Abs) labeled by quantum dots (QDs). The first part of his work is to develop and optimize the conjugation of polyclonal antibodies to quantum dot. A study has reported that commercial antibody-quantum dots conjugates (Abs-QDs) present very few functional Ab fragments at the surface of the conjugate [Pathak et al., 2007]. We had: (i) developed an advanced procedure of antibody reduction using dithiothreitol (DTT) or 2-mercaptoethanolamine (2-MEA) (to prevent the loss of antibody functions), (ii) purified the active fragments by affinity purification on column, (iii) conjugated the active reduced antibody fragments to QDs using the amine-thiol crosslinker SMCC for SH coupling, and (iv) developed the purification of the conjugates on agarose gel to remove free QDs and unconjugated antibody fragments. Our conjugates present about a five times better ability to detect CD4 by flow cytometry on 500 000 isolated human lymphocyte T cells than those made after the commercial procedure. Another procedure for antibody preparation was addition of sulfhydryl groups on primary amines using N-succinimidyl S-acetylthioacetate (SATA). However this procedure presents some variable yield and the number and the localization of sulfhydryl groups added on antibody cannot be fully controlled. Thereby, the conjugation of these Abs-SH to QDs using SMCC chemistry leads to the creation of aggregates. This Ab preparation in preparation for conjugation to QDs was abandoned.The second part of our work focusses on testing and comparing the ability to detect carcinoembryonic antigen (CEA) by flow cytometry with anti-CEA single domain antibodies (sdAbs) labeled by QDs. The sdAbs were biotinylated by using two methods: (i) in vitro chemical biotinylation reagent which adds biotins on primary amines, and (ii) enzymatic in vivo biotinylation during their production in E. coli. These anti-CEA sdAb biotinylation methods were compared to in vitro biotinylated monoclonal Abs against CEA for their respective ability to detect human CEA on 100 000 mice cells (MC38 and MC38-CEA cell lines) using flow cytometry. The results show that the limit detection for biotinylated sdAbs is similar between in vitro and in vivo biotinylation. Furthermore the limit detection with biotinylated sdAb (0.6 fmol are required to detect CEA) is about fifty times better than with biotinylated monoclonal Abs (33 fmol).

Many-Body Perturbation Theory is put to test as a method for reliable calculations of the electron-electron interaction in two-dimensional quantum dots. We show that second order correlation gives qualitative agreement with experiments on a level which was not found within the Hartree-Fock description. For weaker confinements, the second order correction is shown to be insufficient and higher order contributions must be taken into account. We demonstrate that all order Many-Body Perturbation Theory in the form of the Coupled Cluster Singles and Doubles method yields very reliable results for confinements close to those estimated from experimental data. The possibility to use very large basis sets is shown to be a major advantage compared to Full Configuration Interaction approaches, especially for more than five confined electrons. Also, the possibility to utilize two-electron correlation in combination with tailor made potentials to achieve useful properties is explored. In the case of a two-dimensional quantum dot molecule we vary the interdot distance, and in the case of a two-dimensional quantum ring we vary the ring radius, in order to alter the spectra. In the latter case we demonstrate that correlation in combination with electromagnetic pulses can be used for the realization of quantum logical gates. / At the time of the doctoral defense, the following papers were unpublished and had a status as follows: Paper 5: Manuscript.

Quantum dots exhibit strongly size-dependent optical and electrical properties. The ability to join the dots into complex assemblies creates many opportunities for scientific discovery. This motivated our present research work on QDIPs, DWELLs, and graphene like QDs. The intention of this research was to study the size dependent achievements of QDIPs, DWELLs, and graphene like QDs with those of competitive technologies, with the emphasis on the material properties, device structure, and their impact on the device performance. In this dissertation four research studies pertaining to optical properties of quantum dot and dot-in-a-well infrared photodetectors, I-V characteristics of graphene quantum dots, and energy and spin texture of germanene quantum dots are presented. Improving self-assembled QD is a key issue in the increasing the absorption and improving the performance. In the present research work, an ideal self-assembled QD structure is analyzed theoretically with twenty-hole levels (Intraband optical transitions within the valence band) and twenty-electron energy levels (DWELL). Continuing the efforts to study self-assembled QDs we extended our work to graphene like quantum dots (graphene and germanene) to study the electronic transport properties. We study numerically the intraband optical transitions within the valence band of InxGa1-xAs/GaAs pyramidal quantum dots. We analyze the possibility of tuning of corresponding absorption spectra by varying the size and composition of the dots. Both ‘x ’ and the size of the quantum dot base are varied. We have found that the absorption spectra of such quantum dots are more sensitive to the in-plane incident light. We present numerically obtained absorption optical spectra of n-doped InAs/In0.15Ga0.85As/GaAs quantum dot-in-a-well systems. The absorption spectra are mainly determined by the size of the quantum dot and have weak dependence on the thickness of the quantum well and position of the dot in a well. The dot-in-a-well system is sensitive to both in-plane and out-of-plane polarizations of the incident light with much stronger absorption intensities for the in-plane-polarized light. We also present theoretically obtained I-V characteristics of graphene quantum dots, which are realized as a small piece of monolayer graphene. We describe graphene within the nearest-neighbor tight-binding model. The current versus the bias voltage has typical step-like shape, which is due to discrete energy spectrum of the quantum dot. The current through the dot system also depends on the position of the electrodes relative to the quantum dot. In relation to graphene quantum dots, we present our study of buckled graphene-like materials, like germanene and silicene. We consider theoretically germanene quantum dot, consisting of 13, 27, and 35 germanium atoms. Due to strong spin-orbit interaction and buckled structure of the germanene layer, the direction of the spin of an electron in the quantum dot depends on both the electron energy and external perpendicular electric field. With variation of energy, the direction of spin changes by approximately 4.50. Application of external electric field results in rotation of electron spin by approximately 0.50, where the direction of rotation depends on the electron energy.

In this thesis, the strength of the LBIC system is enhanced in different aspects that includes its feasibility as a non-destructive characterization tool, the signal analysis and development of analytical solution to have better understanding on the defects and inhomogeneities in the quantum dot based hetero-structures for device applications, finally understanding its limits due to the size of the laser beam and interpretation of artefacts in the signal appearance due to the presence of co-devices. Chapter#1 provides the introduction and literature survey of the LBIC system. It covers the importance and area of application of the LBIC. Chapter#2 various tools and instrumentation are discussed briefly for the systems that are developed in the lab as well as standard tools utilised for the material characterization. A LBIC instrumentation a novel colloidal quantum dots (CQD) thin film deposition system is discussed. In the last part along with the standard characterization systems a software tool (semiconductor device simulator) is discussed, which is used to visualize and understand the LBIC profile that is obtained experimentally. Chapter#3 provides the information of colloidal synthesis of PbS and HgxCd1-xTe quantum dots. Device fabrication process is explained step by step for the following devices. p-n junction silicon diodes, PbS-CQD/Si hetero-structures, ITO/PbS-CQD/Al crossbar structures and HgCdTe-CQD/Si hetero-structures. Chapter#4 deals with the major constraints imposed on the LBIC due to the need of Ohmic contacts. To overcome this major limitation, in this work, the origin of the signal is studied with the remote contact geometry for silicon p-n junction devices. It was observed that the signals can be collected with the capacitively coupled remote contacts, where LBIC was ultimately demonstrated as contactless measurement tool without any compromise on the measurements and thus obtained physical parameters. The effect of finite laser beam size is also described, which was found to have effect on the actual dimensions measured with the LBIC images. LBIC utility is further enhanced with the Si/CQD based hetero-structure devices, which are the potential candidates in the evolving device technology to be utilized in various modular systems such as PDs and LED applications. Chapter#5 discusses the origin and possible mechanisms for lateral photo-voltage which is closely monitored in the PbS-CQD/Si hetero-junction device systems. Interestingly, it is observed that there are two different line profiles for n and p type Si substrates. Different mechanisms that give rise to this kind of profiles were found to be distinct and are related to the band alignment of the CQD/Si hetero-structure. It lead to the revelation of an interesting phenomenon and believed to be universally observed irrespective of the materials involved in the formation of hetero-junction. Simulations and experimental results are quite consistent and in agreement with each other, which confirm the underlying physical mechanism that connects the LBIC anomalies with the band alignment. Chapter#6 deals with the spatial variations in the transverse photocurrent in the PbS-CQD film which is studied as a function of applied bias. Analytical equation is setup for the photocurrent in the CQD film under applied bias with the help of available transport mechanism and equations from the literature. The spatial non-uniformity that exists in the photocurrent proved to be the result of spatial inhomoginities in the physical parameters. By correlating the spatial data to the analytical equation, it is shown that the inhomoginities can be predicted. This approach is important for the devices, where monolithic detectors are fabricated by depositing CQD film on Read-Out-Integrated-Circuit (ROIC), where the manifestation of non-uniformity can be understood and probably fixed. Chapter#7 HgCdTe CQD based devices are studied for the purpose of photo-detector applications in MWIR (3  5 μm) region. HgxCd1-xTe Colloidal quantum dots are technologically important due to their wide absorption range that covers different regions of the atmospheric window. HgxCd1-xTe are successfully synthesised, which covers the absorption edge up to ~6.25 m in the IR region. Absorption and photo-response studies are carried out on HgxCd1-xTe/Si hetero-junctions under incident IR radiation. It is observed that the band gap of the quantum dots can be tuned easily by controlling the growth time as a parameter, thus moulded HgxCd1-xTe CQD/Si hetero-structures were found to have good photo-response. Chapter#8 the summary and the future direction and scope of the work is discussed. This includes the interesting observations during this thesis work which are not reported here in details.

Ma thèse concerne le développent de systèmes ultra compactes auto-alignés et à faible coût intégréssur fibre optique monomode pour la collection fibrée de la luminescence locale. Dans un premiertemps, un axicon fibré auto-aligné (AXIGRIN) est proposé permettant de fournir la première imagerierésolue ultra-compacte fibrée de quantum dots PbS infrarouges. Ensuite, la première nano-imagerie(système entièrement fibrée) de quantum dots PbS uniques est réalisée à l’aide d’une nano-antenneà ouverture bowtie intégrée sur pointe fibrée. Enfin, le concept d’≪antenne cornet≫ nano-optiqueest proposé pour le couplage direct et efficace de la luminescence excitée par rayons X à une fibreoptique, dans le but de générer les premiers capteurs et dosimètres fibrés à rayons X. / My thesis is devoted to develop ultra-compact, plug-and-play and low-cost single-mode optical fibersystems for in-fiber luminescence collection. First, a new fiber self-aligned axicon is proposed toprovide the first resolved infrared fluorescence imaging of PbS quantum dots in far field. Then,all-fiber near-field imaging of single PbS quantum dots is achieved by double resonance bowtienano-aperture antenna (BNA) with nanometer resolution. Finally, the concept of fiber nano-opticalhorn antenna is proposed for in-fiber X-ray excited luminescence out-coupling, with the purpose ofgenerating the first generation of fiber X-ray sensors and dosimeters

The ability to fabricate semiconductor wafers with spatially selected regions of different bandgap material is required for the fabrication of monolithic photonic integrated circuits (PIC's). Although this subject has been studied for three decades and many semiconductor engineering approaches have been proposed, the problem of achieving reproducible results has constantly challenged scientists and engineers. This concerns not only the techniques relaying on multiple sequential epitaxial growth and selective area epitaxy, but also the conventional quantum well intermixing (QWI) technique that has been investigated as a post-growth approach for bandgap engineering. Among different QWI techniques, those based on the use of different lasers appear to be attractive in the context of high-precision and the potential for cost-effective bandgap engineering. For instance, a tightly focused beam of the infrared (IR) laser could be used for the annealing of small regions of a semiconductor wafer comprising different quantum well (QW) or quantum dot (QD) microstructures. The precision of such an approach in delivering wafers with well defined regions of different bandgap material will depend on the ability to control the laser-induced temperature, dynamics of the heating-cooling process and the ability to take advantage of the bandgap engineering diagnostics. In the frame of this thesis, I have investigated IR laser-induced QWI processes in QW wafers comprising GaAs/A1GaAs and InP/InGaAsP microstructures and in InAs QD microstructures grown on InP substrates. For that purpose, I have designed and set up a 2-laser system for selective area rapid thermal annealing (Laser-RTA) of semiconductor wafers. The advantage of such an approach is that it allows carrying out annealing with heating-cooling rates unattainable with conventional RTA techniques, while a tightly focused beam of one of the IR lasers is used for `spot annealing'. These features have enabled me to introduce a new method for iterative bandgap engineering at selected areas (IBESA) of semiconductor wafers. The method proves the ability to deliver both GaAs and InP based QW/QD wafers with regions of different bandgap energy controlled to better than « 1nm of the spectral emission wavelength. The IBESA technique could be used for tuning the optical characteristics of particular regions of a QW wafer prepared for the fabrication of a PIC. Also, this approach has the potential for tuning the emission wavelength of individual QDs in wafers designed, e.g., for the fabrication of single photon emitters. In the 1st Chapter of the thesis, I provide a short review of the literature on QWI techniques and I introduce the Laser - RTA method. The 2nd Chapter is devoted to the description of the fundamental processes related to the absorption of laser light in semiconductors. I also discuss the results of the finite element method applied for modeling and semi-quantitative description of the Laser - RTA process. Details of the experimental setup and developed procedures are provided in the 3rd Chapter. The results concerning direct bandgap engineering and iterative bandgap engineering are discussed in the 4th and 5th Chapters, respectively.

V této teoretické práci se zabýváme kvantově mechanickými jevy, jež jsou spjaté s vodi- vostními elektrony uzavřenými v kvantových tečkách. Nejprve je odvozen model nanokrys- talu jakožto potenciálové jámy. Při tom se ukazuje, že pouze objem, ne tvar, je významným parametrem modelu pro účely terahertzové spektroskopie. Studované geometrie jsou tak vzájemně zaměnitelné a výběr mezi nimi m·že zjednodušit dané úlohy. Pro zkoumání depo- larizačních efekt·, které jsou zahrnuty v depolarizačním faktoru v Maxwell Garnettově teorii efektivního prostředí, je zvolena sférická symetrie. V rámci poruchy prvního řádu je vyřešena Poissonova rovnice pro elektrony rozmístěné uvnitř koule podle vlnové funkce a je určen depo- larizační faktor. Zatímco v klasické limitě tento nabývá p·vodní hodnoty, pro nanokrystaly se zvyšuje a maxima je dosaženo v ne-degenerovaném režimu, kdy je obsazen pouze základní stav. Navýšení depolarizačního faktoru posouvá plasmonovou rezonanci směrem k vyšším frekvencím. 1