A organização da membrana biológica em microdomínios tem um papel chave em vários processos celulares semelhante a receptores protéicos e a transdução de sinal. A existência de microdomínios, também denominados de rafts tem sido explicada pela separação das membranas lipídicas em duas fases: liquida cristalina (L) e fase liquida ordenada (Lo) rica em colesterol e esfingolipídeos. Assim, o enfoque deste projeto foi correlacionar mecanismos de controle da atividade da fosfatase alcalina (TNAP) com a organização intermolecular e o estado de fase de alguns lipídios que compõem as vesículas da matrix. Foi estudada a modulação da atividade da enzima e sua inserção à sistemas de lipossomos constituídos com diferentes composições lipídicas (Dipalmitoilfosfatidilcolina, Colesterol, Esfingomielina e Gangliosídeo) como um mecanismo de regulação e transdução entre enzimas que não compartilham intermediários metabólicos comuns. Isto é, verificar como mudanças de organização molecular, induzida por colesterol e/ou outros lipídios, podem modular a atividade de enzimas regulando a produção de mensageiros lipídicos secundários e/ou processos de fusão e recombinação topológica da bicamada lipídica, modulando concomitantemente a atividade da fosfatase alcalina. Com tal propósito, a TNAP foi reconstituída em lipossomos constituídos de DPPC e lipossomos mistos formando sistemas binários DPPC:Chol, DPPC:SM e DPPC:GM1 com razões molares de (9:1); sistemas terciários DPPC:Chol:SM, DPPC:Chol:GM1 e DPPC:SM:GM1 com razões molares de (8:1:1) e por fim sistemas quaternários constituídos de DPPC:Chol:SM:GM1 (7:1:1:1). Estes sistemas foram propostos com o intuito de mimetizarmos os lipid rafts existentes nas membranas biológicas, porém utilizando lipídios que já foram identificados e quantificados nas vesículas da matrix. Foram avaliados os efeitos da composição lipídica dos lipossomos na inserção da enzima aos sistemas vesiculares. Além disso, foram realizados estudos biofísicos de calorimetria analisando como os parâmetros termodinâmicos são afetados com as diferentes composições lipídicas e pela presença da enzima ancorada aos sistemas. A reconstituição da enzima a lipossomos constituídos de DPPC proporcionou uma incorporação em torno de 80% da atividade enzimática. Estudos termodinâmicos dos proteolipossomos formados evidenciaram uma queda significativa nos valores de variação de entalpia em relação aos sistemas de lipossomos (de 7,63 a 1,88 kcal.mol-1). Lipossomos binários constituídos de DPPC:Chol em concentrações crescentes (9:1, 9:2, 9:3, 7:3, 9:4 e 9:5 razão molar) foram estudados tanto pelos parâmetros biofísicos como pela habilidade de inserção da enzima a tais sistemas. Foi observado um significativo decréscimo nos valores de variação entalpia com o aumento da proporção de colesterol no lipossomo. Além disso, a presença do colesterol proporcionou uma redução na inserção da atividade catalítica em até 42%, quando utilizada a composição lipídica de 9:5 DPPC:Chol. Dos sistemas binários formados com razões molares 9:1, o que apresentou maior porcentagem de reconstituição da TNAP foi o sistemas DPPC:Chol, apresentando em torno de 62% de incorporação da enzima. Os sistemas terciários apresentaram ao redor de 30% de incorporação da atividade catalítica e o sistema quaternário em torno de 25%. Além dos ensaios de atividade enzimática, a incorporação da enzima aos sistemas vesiculares também pôde ser comprovada pelas mudanças nos parâmetros termodinâmicas detectados por DSC. Nos estudos de calorimetria de todos os sistemas de proteolipossomos formados, foram observadas significativas diminuições nos valores de variação de entalpia quando comparados aos sistemas de lipossomos correspondentes. Deste modo, os resultados aqui apresentados fornecem novas informações que poderão contribuir tanto para a compreensão do comportamento da atividade da fosfatase alcalina na presença de diferentes composições lipídicas dos microdomínios existente membrana, quanto para o entendimento dos processos de regulação da enzima durante o processo de biomineralização. / The organization of the biological membrane in microdomains has a key roll in many cellular processes similar to proteic receptors and signal transduction. The existence of microdomains, also called rafts, has been explained by the lipid membrane separation in two phases: crystalline phase (L) and ordinate liquid phase (Lo), rich in cholesterol and sphingolipids. The focus of this Project was to correlate activity control mechanisms of the alkaline phosphatase (TNAP) with the intermolecular organization and the phase stat of some lipids that comprise the matrix vesicles. The enzyme activity modulation and its insertion into liposomes systems, constituted by different lipid compositions (DPPC, Chol, SM e GM1) as a regulation and transduction mechanism between enzymes that do not share common intermediary metabolites, was studied. That is, to verify how molecular organization changes, induced by cholesterol and/or other lipids, can modulate the enzyme activity regulating the production of secondary lipid messengers and/or fusion processes and topological recombination of the lipidic bilayer, concomitantly modeling the alkaline phosphatase activity. TNAP was then reconstituted in liposomes constituted by DPPC and mixed liposomes forming binary systems DPPC:Chol , DPPC:SM , DPPC: Chol:GM1 with (9:1) molar rates; tertiary systems DPPC:Chol:SM, DPPC:Chol:GM1 and DPPC:SM:GM1 with (8:1:1) molar rates and finally quaternary system constituted by DPPC:Chol:SM:GM1 (7:1:1:1). These systems were proposed aiming the mimetization of lipid rafts existent in biological membranes, but using lipids that had already been identified and quantified in the matrix vesicles. The effects of liposome lipid composition in the enzyme insertion to the vesicular systems were assayed. Besides that, calorimetry biophysical studies were done analyzing how the thermodynamic parameters are affected by the different lipid compositions e by the presence of the systems anchored enzyme. The enzyme reconstruction to the DPPC constituted liposomes has provided an incorporation of around 80% of the enzyme activity. Thermodynamic studies of the proteoliposomes formed have shown a significant decrease in the H values in relation to the liposomes systems (from 7.63 to 1.88 kcal.mol-1). Binary liposomes constituted of DPPC:Chol in increasing concentrations (9:1, 9:2, 9:3, 7:3, 9:4 e 9:5 molar ratio) were studied by the biophysical parameters as well as by the insertion ability of the enzyme into those systems. A significant decrease in the enthalpy values with the increase of the cholesterol proportion in the liposome was observed. Besides that, the presence of cholesterol has allowed a reduction in the insertion of the catalytic activity in up to 42% when the lipid composition 9:5 DPPPC:Chol was used. Among the binary systems formed with molar ratios of 9:1, the one which showed the highest percentage of TNAP reconstitution was the DPPC:Chol system, with around 62% enzyme incorporation. The tertiary systems had around 30% incorporation of the catalytic activity, and the quaternary system around 25%. Besides the enzymatic activity assays, the enzyme incorporation to the vesicular systems can also be verified by the thermodynamic parameters change detected by DSC. In the calorimetry studies of all the proteoliposomes formed, significant decreases in the enthalpy values were observed when compared to the corresponding liposomes systems. Thereby, the results presented here provide new information that can contribute to understand the alkaline phosphatase behavior in the presence of different microdomain lipid compositions existent in the membrane, as well as understanding the regulation processes of the enzyme during the biomineralization process.

The cellular membrane is a complex biological entity, far from being an inert assembly of protein and lipids which separates cells from the surrounding environment. A multitude of biological processes, ranging from active transport of ions into and out of the cell, to the immune response, are regulated at the level of the plasma membrane. The understanding of their molecular basis is among the central goals of modern biological research. In order to dissect the complexity of actual cell membranes, which involves a very complex network of intermolecular interactions, a “divide and conquer” strategy proves very useful. To this end, researchers try to isolate molecules from complex biological contexts to understand their function in simple model systems under controlled conditions. A variety of model membranes have thus been developed in order to gain insight into membrane processes. This approach has resulted in a deeper knowledge on how lipids and proteins interact and how these interactions govern the function of cellular membranes. In the recent past in fact, a connection has been established between the lateral structure of the plasma membrane and its biological function. Furthermore, a large range of biophysical techniques have been used to characterize protein-lipid microdomains. For example, atomic force microscopy (AFM) is a powerful technique which allows a highly detailed topographical characterization of lipid domains in physiological conditions. While AFM imaging offers an extremely high spatial resolution, up to the nanometer scale, the limited image acquisition speed (minutes) can pose a severe drawback in adequately studying fast dynamic processes. On the other hand, fluorescence based imaging techniques are much faster (10-3-100 s), but certainly lack the high spatial resolution that AFM offers. FCS in particular can also provide information about dynamic processes, like diffusion of fluorescent membrane components. For these reasons, implementing a combination of the above mentioned techniques on the same sample (e.g. cell membrane models) would prove extremely beneficial in the complete dynamic and structural characterization of molecular interactions. . The work described in this thesis can be summarized in two main points: i) the development of a novel combined approach of atomic force microscopy (AFM), laser scanning imaging (LSM), and fluorescence correlation spectroscopy (FCS) and ii) the study of the effects of ceramide in the lateral organization of model plasma membranes. We described one of the first simultaneous applications of AFM and FCS on biologically relevant systems. More specifically, model membranes showing complex phase separation were investigated with a combined approach of AFM, confocal fluorescence imaging, force measurements and FCS, based on commercially available instruments. AFM conveys information about the structural and mechanical properties of the different lipid phases. Different membrane domains can be distinguished based on height difference, elastic properties and line tension as measured by the AFM tip. Simultaneous optical measurements offer the correlation of these data in real time with the partition behavior and diffusion of fluorescent lipids and proteins. We established a clear link between the local membrane viscosity, probed by FCS, and the lipid-lipid interactions involved in line tension, probed by AFM force measurements. An example of a significant drawback circumvented by the AFM-FCS approach involves the use of AFM micromanipulation to eliminate unwanted interactions between lipid particles — similar to intra-cellular vesicles found in vivo experiments — and the membrane, which usually result in distorted FCS autocorrelation curves. Finally, the combined application of AFM and FCS on membrane-anchored proteins reconstituted in lipid bilayers has been instrumental in clarifying inconsistencies that arose in work that focused solely on either AFM or fluorescence techniques. We have shown that, in the case of proteins diffusing in the plane of the membrane, AFM can unambiguously detect only a small immobile fraction. Furthermore, since AFM detection of proteins might be facilitated by high local membrane viscosity (e.g. in ordered lipid phases), the measurement of protein partition between disordered and ordered membrane domains might be biased toward the latter. In this case, the use of FCS as a complementary technique allows a more thorough investigation and deeper understanding of the system of interest. The second part of this thesis dealt with the study of complex lipid mixtures which are used to model the putative lipid/proteins domains in cells, called “rafts”. Firstly, we proved how the combined fluorescence imaging/AFM approach is useful in general for studying supported lipid membranes and the role of lipid domains in biological contexts. We investigated the effect of environmental stress on biological membranes and the protective effects of several substances. Our experimental approach was shown to be a new valuable method to visualize the dehydration damage and its effects on the lateral organization of lipid domains. Our results demonstrated that disaccharides like trehalose or sucrose are effective in protecting lipid membranes, not only on a macroscopic scale — preserving the overall integrity of the bilayer — but also on a microscopic scale, preventing the clustering of microdomains. These phenomena are interesting in the context of biological damage to living cells which need to be stored for long time, like organs to be transplanted or blood platelets. Finally, a large section of this thesis focused on the effects of a specific lipid called “ceramide” on the lateral organization of proteins and lipids in the plasma membrane. Ceramide is produced by cells in several situations, like bacterial infections or apoptosis. As consequence of ceramide production in vivo, the local concentration and the dynamic behavior of lipids and membrane receptors are supposed to exhibit strong variations. In order to understand the molecular mechanisms responsible for these effects, we applied a combination of AFM, FCS and fluorescence imaging on simple model membranes containing ceramide. We could show for the first time that, in presence of raft-like Lo/Ld phase separation, physiological quantities of ceramide induced the formation of a highly ordered gel phase, constituted of ceramide and sphingomyelin. The enzymatic production of ceramide was monitored both in supported and in free-standing bilayers. In the second case, ceramide production was connected to selective vesicle budding from the raft-like phase. Since short-chain analogues are often used in both medical applications and biochemical research to mimic the effect of long-chain ceramides, we investigated the effect of chain-length on ceramide-induced membrane reorganization. We could show that only long-chain ceramides (C18 and C16) form highly ordered domains. Interestingly, FCS measurements indicated that the physical properties of the Lo raft-like domains are hardly affected by the presence of ceramide domains. Furthermore, the increased thickness of the Ld phase — as measured by AFM — and its higher viscosity — as measured by FCS — strongly support the hypothesis of ceramide-induced cholesterol displacement from rafts. On the other hand, short-chain ceramides showed completely different biophysical properties that lead to a destabilization of the raft domains, possibly acting as surfactants between the different lipid phases. Our findings contribute to the explanation of in vivo experiments where short-chain ceramides inhibit cell signaling by disrupting the lipid order in the plasma membrane. We have so far demonstrated that ceramide plays a fundamental role in lipid-lipid interactions. In a physiological context, it is also known to produce dramatic effects in living cells. Since a majority of the processes in vivo are thought to be governed by the activity of proteins, it is highly likely that ceramide not only affects lipid organization but also modifies protein-protein and protein-lipid interactions to produce its effects. To test this hypothesis, we reconstituted several membrane proteins in lipid bilayers containing Ld, Lo, and ceramide-rich domains. We were able to show that some membrane proteins are sorted into ceramide-rich domains. More specifically, the raft-associated proteins we tested were enriched in the highly ordered ceramide-rich domains, while the Ld-associated components were excluded from them. Furthermore, the inclusion of any membrane component in ceramide-rich domains is directly connected to a dramatic reduction of its in-plane diffusion. In an in vivo context, such a reorganization of membrane receptors might be used by the cell to alter the signaling process, for example, by i) separating raft receptors from inhibitors with lower raft affinity, ii) bringing both raft-associated receptors and raft-associated signaling molecules into contact, or iii) stabilizing the interactions between a receptor and its ligand by decreasing their diffusion coefficients. In conclusion, this thesis describes a novel combination of AFM, LSM, and FCS for the investigation of the lateral organization of biological membranes. Our results show that this approach applied on model membranes of increasing complexity is an effective tool for understanding the molecular mechanisms behind the organization of biological membranes. This report opens up new possibilities for further investigation in living cell membranes using the same methodology we have described.

Au cours de ces dernières décennies, l’augmentation de la consommation de glucides, d’acides gras et de cholestérol liée aux changements des habitudes alimentaires dans la plupart des pays industrialisés est à l’origine de nombreuses pathologies telles que l’obésité, les troubles cardiovasculaires, le développement du diabète de type II et la survenue de cancers. Plusieurs arguments bibliographiques suggèrent notamment que le cholestérol puisse être un élément à risque dans la survenue du cancer de la prostate. D’une part, l’hypercholestérolémie est associée à une augmentation des cas de cancer de la prostate et, d’autre part, les cellules cancéreuses présentent des dérèglements du métabolisme des lipides associés à l’accumulation de cholestérol dans les tumeurs solides. Les objectifs de ces travaux ont été d’analyser le rôle du cholestérol dans le développement du cancer de la prostate et d’étudier le rôle des récepteurs nucléaires LXRs (liver X receptors), régulateurs fondamentaux de l’homéostasie du cholestérol, dans les mécanismes associés à l’initiation et à la progression tumorale. Nos résultats montrent qu’une accumulation de cholestérol, induite par un régime chez les souris déficientes en LXRs, peut initier les premières étapes du développement tumoral par des mécanismes épigénétiques mettant en jeu l’action répressive de l’histone méthyltransférase EZH2 sur des gènes suppresseurs de tumeur. En parallèle, l’activation pharmacologique des LXRs dans des cellules cancéreuses humaines réduit la croissance tumorale en augmentant la mort des cellules par des mécanismes faisant intervenir les rafts lipidiques. Au total, nos travaux révèlent l’existence d’une relation entre la consommation excessive de cholestérol et la modification d’empreintes épigénétiques, mécanisme de plus en plus associé aux processus carcinogéniques. Nos données indiquent également que les LXRs, en s’opposant à l’accumulation de cholestérol intracellulaire, ralentissent l’initiation et la progression du cancer de la prostate. Ainsi, toute stratégie thérapeutique visant à diminuer le cholestérol intra-tumoral, telle que l’activation pharmacologique des LXRs, peut être considérée comme une piste thérapeutique dans le cadre du cancer de la prostate. / In the recent decades, increased consumption of carbohydrates, fatty acids and cholesterol, linked to changes in dietary habits in most industrialized countries, is the cause of various diseases such as obesity, cardio-vascular troubles, development of type II diabetes and the onset of cancer. Literature reveals several arguments suggesting that cholesterol may be a risk factor in the occurrence of prostate cancer. First, hypercholesterolemia has been associated with an increased incidence of prostate cancer and, second, cancer cells exhibit deregulations of lipid metabolism associated with cholesterol accumulation in solid tumors. The objectives of this work were to analyze the role of cholesterol in the development of prostate cancer and to study the role of nuclear receptors LXRs (liver X receptors), fundamental regulators of cholesterol homeostasis, in the mechanisms associated with tumor initiation and progression. Our results show that cholesterol overload induced by a diet in lxr knockout mice may initiate the early stages of tumor development by epigenetic mechanisms involving the repressive action of histone methyltransferase EZH2 on tumor suppressor genes. In parallel, the pharmacological activation of LXRs in human cancer cells reduced tumor growth by increasing cell death through mechanisms involving lipid rafts.Taken together, our data reveal the existence of a relationship between environmental factors such as diet consumption of cholesterol and changes of epigenetic imprinting, a mechanism increasingly associated with carcinogenic process. Our data also indicate that LXRs protect from the initiation and progression of prostate cancer by blocking the accumulation of intracellular cholesterol. Thus, all therapeutic strategies leading to intra-tumoral cholesterol lowering, such as pharmacological activation of LXRs, may be relevant treatments of prostate cancer.

Os mastócitos são células multifuncionais do sistema imunológico que participam em diversos processos biológicos. As funções dos mastócitos estão diretamente relacionados com a sua ativação e, subsequente, liberação de mediadores químicos. Os eventos iniciais da ativação dos mastócitos e da transdução de sinais ocorrem em microdomínios lipídicos (lipid rafts) da membrana plasmática. Os gangliosídeos derivados do GD1b são constituintes dos lipid rafts de mastócitos de roedores. O intercruzamento destes gangliosídeos pelo mAb AA4, resulta na formação de agregados (caps) na superfície celular e promove uma ativação parcial dos mastócitos, sem que ocorra a desgranulação. A ativação é semelhante a observada quando os FcRIs são intercruzados por antígenos multivalentes ligados a IgEs, mas neste caso ocorre a desgranulação. O presente estudo tem como objetivo caracterizar o papel dos gangliosídeos derivados do GD1b na liberação de mediadores de mastócitos da linhagem RBL-2H3. O intercruzamento dos gangliosídeos derivados do GD1b resulta na ativação dos fatores de transcrição NFAT e NFB e esta ativação é mediada pela proteína quinase Syk. A ativação destes fatores de transcrição resulta na liberação de mediadores neo-sintetizados, tais como: TNF-, interleucina (IL)-4. Por outro lado, o intercruzamento dos gangliosídeos derivados de GD1b não induz a liberação dos mediadores neoformados como o leucotrieno B4 (LTB4) e o leucotrieno C4 (LTC4). A agregação dos gangliosídeos derivados do GD1b resulta na desorganização dos lipid rafts e na redistribuição de seus componentes, como demostrado pela análise proteômica. Estes dados mostraram proteínas capazes de desencadear uma ativação parcial dos mastócitos e proteínas reguladoras negativas da desgranulação estão up reguladas, enquanto que proteínas críticas para a transdução do sinal estão down reguladas. Os resultados obtidos neste trabalho demonstram que os gangliosídeos derivados do GD1b desempenham papel crucial na integridade dos lipid rafts modulando a ativação e liberação de mediadores de mastócitos. / Mast cells are immunoregulatory cells that participate in diverse biological events. The action of mast cells is directly related to their activation and subsequent mediator release. Early signal transduction events occur in lipid rafts in the plasma membrane. GD1b-derived gangliosides are known constituents of lipid rafts in rodent mast cells. The cross-linking of these gangliosides by mAb AA4 results in a partial activation of mast cells similar to that observed when FcRIs are cross-linked, but does not result in the mast cell degranulation. With time, the gangliosides bound to mAb AA4 cap on the cell surface. The present study aims to characterize the role of the rodent mast cell specific gangliosides derived from GD1b in mediator release from RBL-2H3 mast cells. Cross-linking the GD1b-derived gangliosides activated the transcription factors NFAT and NFB and this activation was mediated by Syk. The activation of theses transcription factors by cross-linked GD1b-derived gangliosides results in the release of the neo-synthesized mediators TNF- and interleukin (IL)-4. However, cross-linking GD1b-derived gangliosides did not stimulate release of the newly formed mediators leukotriene B4 (LTB4) and leukotriene C4 (LTC4). Capping of GD1b-derived gangliosides disorganized lipid rafts and resulted in a redistribution of lipid raft components. Proteomic analysis showed that proteins that trigger mast cell activation and negative regulatory proteins of degranulation are up regulated, whereas proteins critical for signal transduction are down regulated in mast cells where the gangliosides are capped. The results of this work demonstrate that the mast cell-specific GD1b-derived gangliosides are crucial in maintaining the functional integrity of the lipid rafts and modulate cell activation and subsequent mediator release from mast cells.

A organização da membrana biológica em microdomínios tem um papel chave em vários processos celulares semelhante a receptores protéicos e a transdução de sinal. A existência de microdomínios, também denominados de rafts tem sido explicada pela separação das membranas lipídicas em duas fases: liquida cristalina (L) e fase liquida ordenada (Lo) rica em colesterol e esfingolipídeos. Assim, o enfoque deste projeto foi correlacionar mecanismos de controle da atividade da fosfatase alcalina (TNAP) com a organização intermolecular e o estado de fase de alguns lipídios que compõem as vesículas da matrix. Foi estudada a modulação da atividade da enzima e sua inserção à sistemas de lipossomos constituídos com diferentes composições lipídicas (Dipalmitoilfosfatidilcolina, Colesterol, Esfingomielina e Gangliosídeo) como um mecanismo de regulação e transdução entre enzimas que não compartilham intermediários metabólicos comuns. Isto é, verificar como mudanças de organização molecular, induzida por colesterol e/ou outros lipídios, podem modular a atividade de enzimas regulando a produção de mensageiros lipídicos secundários e/ou processos de fusão e recombinação topológica da bicamada lipídica, modulando concomitantemente a atividade da fosfatase alcalina. Com tal propósito, a TNAP foi reconstituída em lipossomos constituídos de DPPC e lipossomos mistos formando sistemas binários DPPC:Chol, DPPC:SM e DPPC:GM1 com razões molares de (9:1); sistemas terciários DPPC:Chol:SM, DPPC:Chol:GM1 e DPPC:SM:GM1 com razões molares de (8:1:1) e por fim sistemas quaternários constituídos de DPPC:Chol:SM:GM1 (7:1:1:1). Estes sistemas foram propostos com o intuito de mimetizarmos os lipid rafts existentes nas membranas biológicas, porém utilizando lipídios que já foram identificados e quantificados nas vesículas da matrix. Foram avaliados os efeitos da composição lipídica dos lipossomos na inserção da enzima aos sistemas vesiculares. Além disso, foram realizados estudos biofísicos de calorimetria analisando como os parâmetros termodinâmicos são afetados com as diferentes composições lipídicas e pela presença da enzima ancorada aos sistemas. A reconstituição da enzima a lipossomos constituídos de DPPC proporcionou uma incorporação em torno de 80% da atividade enzimática. Estudos termodinâmicos dos proteolipossomos formados evidenciaram uma queda significativa nos valores de variação de entalpia em relação aos sistemas de lipossomos (de 7,63 a 1,88 kcal.mol-1). Lipossomos binários constituídos de DPPC:Chol em concentrações crescentes (9:1, 9:2, 9:3, 7:3, 9:4 e 9:5 razão molar) foram estudados tanto pelos parâmetros biofísicos como pela habilidade de inserção da enzima a tais sistemas. Foi observado um significativo decréscimo nos valores de variação entalpia com o aumento da proporção de colesterol no lipossomo. Além disso, a presença do colesterol proporcionou uma redução na inserção da atividade catalítica em até 42%, quando utilizada a composição lipídica de 9:5 DPPC:Chol. Dos sistemas binários formados com razões molares 9:1, o que apresentou maior porcentagem de reconstituição da TNAP foi o sistemas DPPC:Chol, apresentando em torno de 62% de incorporação da enzima. Os sistemas terciários apresentaram ao redor de 30% de incorporação da atividade catalítica e o sistema quaternário em torno de 25%. Além dos ensaios de atividade enzimática, a incorporação da enzima aos sistemas vesiculares também pôde ser comprovada pelas mudanças nos parâmetros termodinâmicas detectados por DSC. Nos estudos de calorimetria de todos os sistemas de proteolipossomos formados, foram observadas significativas diminuições nos valores de variação de entalpia quando comparados aos sistemas de lipossomos correspondentes. Deste modo, os resultados aqui apresentados fornecem novas informações que poderão contribuir tanto para a compreensão do comportamento da atividade da fosfatase alcalina na presença de diferentes composições lipídicas dos microdomínios existente membrana, quanto para o entendimento dos processos de regulação da enzima durante o processo de biomineralização. / The organization of the biological membrane in microdomains has a key roll in many cellular processes similar to proteic receptors and signal transduction. The existence of microdomains, also called rafts, has been explained by the lipid membrane separation in two phases: crystalline phase (L) and ordinate liquid phase (Lo), rich in cholesterol and sphingolipids. The focus of this Project was to correlate activity control mechanisms of the alkaline phosphatase (TNAP) with the intermolecular organization and the phase stat of some lipids that comprise the matrix vesicles. The enzyme activity modulation and its insertion into liposomes systems, constituted by different lipid compositions (DPPC, Chol, SM e GM1) as a regulation and transduction mechanism between enzymes that do not share common intermediary metabolites, was studied. That is, to verify how molecular organization changes, induced by cholesterol and/or other lipids, can modulate the enzyme activity regulating the production of secondary lipid messengers and/or fusion processes and topological recombination of the lipidic bilayer, concomitantly modeling the alkaline phosphatase activity. TNAP was then reconstituted in liposomes constituted by DPPC and mixed liposomes forming binary systems DPPC:Chol , DPPC:SM , DPPC: Chol:GM1 with (9:1) molar rates; tertiary systems DPPC:Chol:SM, DPPC:Chol:GM1 and DPPC:SM:GM1 with (8:1:1) molar rates and finally quaternary system constituted by DPPC:Chol:SM:GM1 (7:1:1:1). These systems were proposed aiming the mimetization of lipid rafts existent in biological membranes, but using lipids that had already been identified and quantified in the matrix vesicles. The effects of liposome lipid composition in the enzyme insertion to the vesicular systems were assayed. Besides that, calorimetry biophysical studies were done analyzing how the thermodynamic parameters are affected by the different lipid compositions e by the presence of the systems anchored enzyme. The enzyme reconstruction to the DPPC constituted liposomes has provided an incorporation of around 80% of the enzyme activity. Thermodynamic studies of the proteoliposomes formed have shown a significant decrease in the H values in relation to the liposomes systems (from 7.63 to 1.88 kcal.mol-1). Binary liposomes constituted of DPPC:Chol in increasing concentrations (9:1, 9:2, 9:3, 7:3, 9:4 e 9:5 molar ratio) were studied by the biophysical parameters as well as by the insertion ability of the enzyme into those systems. A significant decrease in the enthalpy values with the increase of the cholesterol proportion in the liposome was observed. Besides that, the presence of cholesterol has allowed a reduction in the insertion of the catalytic activity in up to 42% when the lipid composition 9:5 DPPPC:Chol was used. Among the binary systems formed with molar ratios of 9:1, the one which showed the highest percentage of TNAP reconstitution was the DPPC:Chol system, with around 62% enzyme incorporation. The tertiary systems had around 30% incorporation of the catalytic activity, and the quaternary system around 25%. Besides the enzymatic activity assays, the enzyme incorporation to the vesicular systems can also be verified by the thermodynamic parameters change detected by DSC. In the calorimetry studies of all the proteoliposomes formed, significant decreases in the enthalpy values were observed when compared to the corresponding liposomes systems. Thereby, the results presented here provide new information that can contribute to understand the alkaline phosphatase behavior in the presence of different microdomain lipid compositions existent in the membrane, as well as understanding the regulation processes of the enzyme during the biomineralization process.

Interleukin-1-beta (IL-1β) is a potent proinflammatory cytokine. A primary outcome of IL-1β signaling is the activation of NFκB, a transcription factor that induces a large number of immune molecules, apoptotic factors, anti-apoptotic factors, and other transcription factors. Recent work has demonstrated that the activation of NFκB involves a multistep redox-signaling cascade that requires endocytosis of the interleukin receptor (IL-1R1)/ligand pair and superoxide production by NADPH oxidase 2 (Nox2) within the resulting newly formed early endosome. Hydrogen peroxide produced by the rapid dismutation of superoxide is necessary for the subsequent downstream recruitment of IL-1R1 effectors (TRAF6, IKK kinases) and ultimately the activation of NFκB. In this thesis, I have further dissected the spatial and temporal events that coordinate signaling processes of the IL-1β pathway. Using a combination of biophotonic imaging, immunofluorescence imaging, and lipid raft density gradient isolation, I demonstrate that both Nox2 and IL-1R1 are constitutively present in lipid raft microdomains on the plasma membrane. Stimulation by IL-1β induces endocytosis of Nox2 and IL-1R1 from the plasma membrane into caveolin-1, lipid raft positive early endosomes. Further, inhibition of lipid raft mediated endocytosis or deletion of caveolin-1 inhibits activation of NFκB, by IL-1β. We have also identified Vav1 as the Rac1 guanine exchange factor that is recruited to caveolin-1 positive lipid rafts following IL-1β stimulation, and demonstrated that dominant negative Vav1 inhibits NFκB activation by IL-1β. Following this work, I utilized assays for redox sensitivity and mass spectrometry to demonstrate that C70, C73, and C105 are hydrogen peroxide sensitive cysteines within the RING domain of TRAF6. I further demonstrate that hydrogen peroxide does not alter the E3 ubiquitin ligase activity associated with the TRAF6 RING domain. My findings suggest that the redox sensitivity of the RING domain mediates TRAF6 recruitment to the receptor complex. This is supported by the observation that hydrogen peroxide treatment of TRAF6, but not early signaling effectors (IL-1R1, IRAK1, IRAK4, MyD88) mediates TRAF6 recruitment to the IL-1 receptor complex. Further, mutation of the identified redox sensitive cysteines inhibits IL-1β signaling and NFκB activation. This research has helped to refine the understanding of the IL-1β signaling pathway, and may ultimately lead to new therapeutic targets for controlling inflammation.

Hyper-activation of N-methyl-D-aspartate receptors (NRs) is associated with excitotoxic cell death during secondary injury following traumatic brain injury (TBI). The efficiency of the NR is dependent on the location of receptors in membrane raft microdomains that provide a platform for coupling of NRs and effector proteins. In many neurodegenerative diseases, activation of the autophagy pathway has been suggested to contribute to glutamate excitotoxicity, but whether increased autophagy signaling contributes to pathology after TBI has not been defined. In these studies, I investigate whether membrane rafts mediate NR signaling and autophagy in cortices of adult male rats subjected to moderate TBI and in sham-operated controls. These studies demonstrate that membrane rafts of the normal rat cortex contain a novel multi-protein signaling complex that links the NR2B glutamate receptor and the autophagic protein Beclin 1. TBI caused a rapid disruption of this complex in which NR2B and pCaMKII were recruited to membrane microdomains. Alteration in NR2B-Beclin 1 association in membrane rafts resulted in activation of autophagy as demonstrated by increased expression of key autophagic proteins Beclin 1, ATG 5 and ATG 7, and significant increases in autophagic vacuoles in neurons of traumatized brains. Administration of the NR2B antagonist RO 25-6981 significantly blocked TBI-induced redistribution of NR2B signaling intermediates and Beclin 1 and delayed the increase in autophagy protein expression in traumatized cortices. Thus, stimulation of autophagy by NR2B signaling may be regulated by redistribution of Beclin 1 in membrane rafts after TBI.

The thesis is divided into two major parts. The first part focuses on the localisation of probes in lipid/polymeric bilayers and in GM1 micelles. Included in this thesis is a new approach based on electronic energy transfer/migration (FRET/DDEM), which efficiently determines transversal positions of fluorescent molecules in lipid bilayers. This approach has been used to locate newly synthesized lipid probes in DOPC bilayers. The label was introduced at the end of sn-2 acyl chains of variable length. Analytical models accounting for FRET exist for a limited number of basic geometries. Here, a combination of FRET and Monte Carlo simulations enables the localisation of probes in bicelles and in bilayers containing pores, i.e. in lipid systems with variable curvature, or in non-homogenous lipid systems. This approach has been used to test whether conical-like fluorescence probes have an increased affinity to highly curved regions, which would enable preferential labelling of membrane pores. A simplified FRET model has been applied to localize 2-pyridones, a class of potential drugs, in GM1 micelles. Since the localisation of drugs within nanoparticles might influence the release kinetics and loading efficiency, knowledge about the drug location is highly relevant. It turned out that all derivatives were localised at the core-shell interface of GM1 micelles. The second part of the thesis focuses mainly on the estimation of lipid nanodomain size by means of FRET, which still remains the most powerful method in this field. Limitations of FRET in the determination of domain size have been explored. We showed that the limitations of FRET are mainly caused by a low probes affinity to either the liquid-ordered or liquid-disordered phase. In the continuing work we provided a detailed dynamic and structural study of crosslinker-triggered formation of nanodomains. Here, two different domains have been revealed, i.e. i) domains whose size grows with increasing amount of added cholera toxin (CTxB), and to which CTxB binds tightly; ii) domains formed in membranes containing a slightly increased amount of sphingomyelin (as compared to i) whose size does not change during titration by additional CTxB and to which CTxB binds less tightly. / Disertace je rozdělena do dvou hlavníchčástí. Prvníčást se zabývá lokalizací značek v lipidových/polymerních dvojvrstvách a v GM1micelách. V práci prezentujeme nový přístup založený na přenosu/migraci elektronické energie (FRET/DDEM), jež umožňuje efektivně určovat vertikální pozici fluorescenčních molekul uvnitř lipidové dvojvrstvy. Tato metoda byla použita k lokalizaci nově syntetizovaných lipidových značek značených na konci sn-2 acylového řetězce s různou délkou v DOPC dvojvrstvách. Analytické modely popisující FRET existují pouze pro limitovaný počet základních geometrií. Kombinace FRETu s Monte Carlo simulacemi nicméně umožňuje lokalizaci značek v bicelách a v dvojvrstvách obsahujících póry, tj. v lipidových systémech s proměnlivým zakřivením a v nehomogenních lipidových útvarech. Tento přístup umožnil např. zjistit, zda kuželovitětvarované značky mají zvýšenou afinitu k vysoce zakřiveným oblastem dvojvrstvy, což by umožnilo preferenční značení pórů. Lokalizovány byly rovněž tři deriváty 2-pyridonů(potencionálních léčiv) v GM1micelách za použití jednoduchého modelu zohledňujícího FRET mezi donory a akceptory nacházejícími se v micelách. Lokalizace léčiv v nanočásticích ovlivňuje kinetiku uvolňování (release kinetics) a množství látky solubilizované v micelách (loading efficiency). Druhá část se především zabývá určováním velikostí lipidových nanodomén pomocí FRETu, který stále zůstává nejvíce výkonnou metodou v této oblasti. Zkoumány byly limitace FRETu v určování lipidových nanodomén. Ukázalo se, že tato omezení jsou především způsobena nízkou afinitou značek buď k Lonebo k Ldfázi. V navazující studii jsme poskytnuli detailní dynamickou a strukturní studii formace nanodomén indukované crosslinkerem. Objevili jsme dva typy domén: a) domény, jejichž velikost se zvětšuje s rostoucím množstvím přidaného cholera toxinu (CTxB) a k nimž se CTxB váže pevně a b) domény vzniklé v membránách se zvýšeným množstvím sfingomyelinu (ve srovnání s a)), jejichž velikost se nemění během titrace dodatečným CTxB a k nimž se CTxB váže méně pevně. / This thesis has been elaborated within the framework of the Agreement on JointSupervision (co-tutelle) of an International Doctoral Degree Programmebetween Charles University in Prague, Czech Republic and the Department of Chemistry at Umeå University, Sweden.

Understanding the assembly of monomeric components into specific molecular motifs is a central theme in materials and surface engineering. Motif designs, specifically using a controllable template, can yield materials with desired optical or electronic properties. The objective of this thesis is to understand the aggregate size, packing, and monomer orientation for the cationic dye, pseudoisocyanine. These organic molecules assemble into crystals in solution, on planar bilayer templates, and on the membranes of living cells. Pseudoisocyanine J-aggregates were found to form on top of the heterogeneous lipid domains in a phospholipid bilayer. This behaviour is limited to a few headgroup chemistries and lateral packing motifs, allowing one to control aggregation via a combination of these two factors. These aggregates are low-dimensional and display polymorphism. Using atomic force microscopy and visible-light spectroscopy, distinct optical characteristics can be correlated to different bilayer templated J-aggregate morphologies. The molecular packing of a similar J-aggregate crystal was resolved using both atomic force microscopy and selected area electron diffraction. The infrared absorption spectra of different polymorphs also displayed distinct differences. These separate examinations enabled a perspective that clarifies the geometry, packing, orientation, and size of templated J-aggregates. Insights into the templating of J-aggregates on the molecular scale reveals that they are sensitive reporters of membrane phase in adherent cells, and are compatible with established cell biology techniques. Lipid domains in live mammalian cells were visualized using fluorescent J-aggregates in combination with endogenous marker proteins of the endocytic process. Analysis of live cell images and additional biophysical work revealed that pseudoisocyanine J-aggregates formed on domains of the anionic lipid bis(monoacylglycerol)phosphate. Only by using J-aggregates can this lipid be shown to form well-ordered domains during endosomal maturation, leading to multivesicular body formation. These data demonstrate that a correlated optical and topographical approach is necessary to understand the structure of fluorescent molecular assemblies, and form the basis for utilizing such aggregates in a biological context.

Understanding the assembly of monomeric components into specific molecular motifs is a central theme in materials and surface engineering. Motif designs, specifically using a controllable template, can yield materials with desired optical or electronic properties. The objective of this thesis is to understand the aggregate size, packing, and monomer orientation for the cationic dye, pseudoisocyanine. These organic molecules assemble into crystals in solution, on planar bilayer templates, and on the membranes of living cells. Pseudoisocyanine J-aggregates were found to form on top of the heterogeneous lipid domains in a phospholipid bilayer. This behaviour is limited to a few headgroup chemistries and lateral packing motifs, allowing one to control aggregation via a combination of these two factors. These aggregates are low-dimensional and display polymorphism. Using atomic force microscopy and visible-light spectroscopy, distinct optical characteristics can be correlated to different bilayer templated J-aggregate morphologies. The molecular packing of a similar J-aggregate crystal was resolved using both atomic force microscopy and selected area electron diffraction. The infrared absorption spectra of different polymorphs also displayed distinct differences. These separate examinations enabled a perspective that clarifies the geometry, packing, orientation, and size of templated J-aggregates. Insights into the templating of J-aggregates on the molecular scale reveals that they are sensitive reporters of membrane phase in adherent cells, and are compatible with established cell biology techniques. Lipid domains in live mammalian cells were visualized using fluorescent J-aggregates in combination with endogenous marker proteins of the endocytic process. Analysis of live cell images and additional biophysical work revealed that pseudoisocyanine J-aggregates formed on domains of the anionic lipid bis(monoacylglycerol)phosphate. Only by using J-aggregates can this lipid be shown to form well-ordered domains during endosomal maturation, leading to multivesicular body formation. These data demonstrate that a correlated optical and topographical approach is necessary to understand the structure of fluorescent molecular assemblies, and form the basis for utilizing such aggregates in a biological context.