The Data Web has undergone a tremendous growth period. It currently consists of more then 3300 publicly available knowledge bases describing millions of resources from various domains, such as life sciences, government or geography, with over 89 billion facts. In the same way, the Document Web grew to the state where approximately 4.55 billion websites exist, 300 million photos are uploaded on Facebook as well as 3.5 billion Google searches are performed on average every day. However, there is a gap between the Document Web and the Data Web, since for example knowledge bases available on the Data Web are most commonly extracted from structured or semi-structured sources, but the majority of information available on the Web is contained in unstructured sources such as news articles, blog post, photos, forum discussions, etc. As a result, data on the Data Web not only misses a significant fragment of information but also suffers from a lack of actuality since typical extraction methods are time-consuming and can only be carried out periodically. Furthermore, provenance information is rarely taken into consideration and therefore gets lost in the transformation process. In addition, users are accustomed to entering keyword queries to satisfy their information needs. With the availability of machine-readable knowledge bases, lay users could be empowered to issue more specific questions and get more precise answers. In this thesis, we address the problem of Relation Extraction, one of the key challenges pertaining to closing the gap between the Document Web and the Data Web by four means. First, we present a distant supervision approach that allows finding multilingual natural language representations of formal relations already contained in the Data Web. We use these natural language representations to find sentences on the Document Web that contain unseen instances of this relation between two entities. Second, we address the problem of data actuality by presenting a real-time data stream RDF extraction framework and utilize this framework to extract RDF from RSS news feeds. Third, we present a novel fact validation algorithm, based on natural language representations, able to not only verify or falsify a given triple, but also to find trustworthy sources for it on the Web and estimating a time scope in which the triple holds true. The features used by this algorithm to determine if a website is indeed trustworthy are used as provenance information and therewith help to create metadata for facts in the Data Web. Finally, we present a question answering system that uses the natural language representations to map natural language question to formal SPARQL queries, allowing lay users to make use of the large amounts of data available on the Data Web to satisfy their information need.

Textmining beschäftigt sich mit der automatisierten Annotierung von Texten und der Extraktion einzelner Informationen aus Texten, die dann für die Weiterverarbeitung zur Verfügung stehen. Texte können dabei kurze Zusammenfassungen oder komplette Artikel sein, zum Beispiel Webseiten und wissenschaftliche Artikel, umfassen aber auch textuelle Einträge in sonst strukturierten Datenbanken. Diese Dissertationsschrift bespricht zwei wesentliche Themen des biomedizinischen Textmining: die Extraktion von Zusammenhängen zwischen biologischen Entitäten ---das Hauptaugenmerk liegt dabei auf der Erkennung von Protein-Protein-Interaktionen---, und einen notwendigen Vorverarbeitungsschritt, die Erkennung von Proteinnamen. Diese Schrift beschreibt Ziele, Herausforderungen, sowie typische Herangehensweisen für alle wesentlichen Komponenten des biomedizinischen Textmining. Wir stellen eigene Methoden zur Erkennung von Proteinnamen sowie der Extraktion von Protein-Protein-Interaktionen vor. Zwei eigene Verfahren zur Erkennung von Proteinnamen werden besprochen, eines basierend auf einem Klassifikationsproblem, das andere basierend auf Suche in Wörterbüchern. Für die Extraktion von Interaktionen entwickeln wir eine Methode zur automatischen Annotierung großer Mengen von Text im Bezug auf Relationen; diese Annotationen werden dann zur Mustererkennung verwendet, um anschließend die gefundenen Muster auf neuen Text anwenden zu können. Um Muster zu erkennen, berechnen wir Ähnlichkeiten zwischen zuvor gefundenen Sätzen, die denselben Typ von Relation/Interaktion beschreiben. Diese Ähnlichkeiten speichern wir als sogenannte `consensus patterns''. Wir entwickeln eine Alignmentstrategie, die mehrschichtige Annotationen pro Position im Muster erlaubt. In Versuchen auf bekannten Benchmarks zeigen wir empirisch, dass unser vollautomatisches Verfahren Resultate erzielt, die vergleichbar sind mit existierenden Methoden, welche umfangreiche Eingriffe von Experten voraussetzen. / Text mining deals with the automated annotation of texts and the extraction of facts from textual data for subsequent analysis. Such texts range from short articles and abstracts to large documents, for instance web pages and scientific articles, but also include textual descriptions in otherwise structured databases. This thesis focuses on two key problems in biomedical text mining: relationship extraction from biomedical abstracts ---in particular, protein--protein interactions---, and a pre-requisite step, named entity recognition ---again focusing on proteins. This thesis presents goals, challenges, and typical approaches for each of the main building blocks in biomedical text mining. We present out own approaches for named entity recognition of proteins and relationship extraction of protein-protein interactions. For the first, we describe two methods, one set up as a classification task, the other based on dictionary-matching. For relationship extraction, we develop a methodology to automatically annotate large amounts of unlabeled data for relations, and make use of such annotations in a pattern matching strategy. This strategy first extracts similarities between sentences that describe relations, storing them as consensus patterns. We develop a sentence alignment approach that introduces multi-layer alignment, making use of multiple annotations per word. For the task of extracting protein-protein interactions, empirical results show that our methodology performs comparable to existing approaches that require a large amount of human intervention, either for annotation of data or creation of models.

This thesis aims to develop a Relation Extraction algorithm to extract knowledge out of automotive data. While most approaches to Relation Extraction are only evaluated on newspaper data dealing with general relations from the business world their applicability to other data sets is not well studied. Part I of this thesis deals with theoretical foundations of Information Extraction algorithms. Text mining cannot be seen as the simple application of data mining methods to textual data. Instead, sophisticated methods have to be employed to accurately extract knowledge from text which then can be mined using statistical methods from the field of data mining. Information Extraction itself can be divided into two subtasks: Entity Detection and Relation Extraction. The detection of entities is very domain-dependent due to terminology, abbreviations and general language use within the given domain. Thus, this task has to be solved for each domain employing thesauri or another type of lexicon. Supervised approaches to Named Entity Recognition will not achieve reasonable results unless they have been trained for the given type of data. The task of Relation Extraction can be basically approached by pattern-based and kernel-based algorithms. The latter achieve state-of-the-art results on newspaper data and point out the importance of linguistic features. In order to analyze relations contained in textual data, syntactic features like part-of-speech tags and syntactic parses are essential. Chapter 4 presents machine learning approaches and linguistic foundations being essential for syntactic annotation of textual data and Relation Extraction. Chapter 6 analyzes the performance of state-of-the-art algorithms of POS tagging, syntactic parsing and Relation Extraction on automotive data. The findings are: supervised methods trained on newspaper corpora do not achieve accurate results when being applied on automotive data. This is grounded in various reasons. Besides low-quality text, the nature of automotive relations states the main challenge. Automotive relation types of interest (e. g. component – symptom) are rather arbitrary compared to well-studied relation types like is-a or is-head-of. In order to achieve acceptable results, algorithms have to be trained directly on this kind of data. As the manual annotation of data for each language and data type is too costly and inflexible, unsupervised methods are the ones to rely on. Part II deals with the development of dedicated algorithms for all three essential tasks. Unsupervised POS tagging (Chapter 7) is a well-studied task and algorithms achieving accurate tagging exist. All of them do not disambiguate high frequency words, only out-of-lexicon words are disambiguated. Most high frequency words bear syntactic information and thus, it is very important to differentiate between their different functions. Especially domain languages contain ambiguous and high frequent words bearing semantic information (e. g. pump). In order to improve POS tagging, an algorithm for disambiguation is developed and used to enhance an existing state-of-the-art tagger. This approach is based on context clustering which is used to detect a word type’s different syntactic functions. Evaluation shows that tagging accuracy is raised significantly. An approach to unsupervised syntactic parsing (Chapter 8) is developed in order to suffice the requirements of Relation Extraction. These requirements include high precision results on nominal and prepositional phrases as they contain the entities being relevant for Relation Extraction. Furthermore, accurate shallow parsing is more desirable than deep binary parsing as it facilitates Relation Extraction more than deep parsing. Endocentric and exocentric constructions can be distinguished and improve proper phrase labeling. unsuParse is based on preferred positions of word types within phrases to detect phrase candidates. Iterating the detection of simple phrases successively induces deeper structures. The proposed algorithm fulfills all demanded criteria and achieves competitive results on standard evaluation setups. Syntactic Relation Extraction (Chapter 9) is an approach exploiting syntactic statistics and text characteristics to extract relations between previously annotated entities. The approach is based on entity distributions given in a corpus and thus, provides a possibility to extend text mining processes to new data in an unsupervised manner. Evaluation on two different languages and two different text types of the automotive domain shows that it achieves accurate results on repair order data. Results are less accurate on internet data, but the task of sentiment analysis and extraction of the opinion target can be mastered. Thus, the incorporation of internet data is possible and important as it provides useful insight into the customer\'s thoughts. To conclude, this thesis presents a complete unsupervised workflow for Relation Extraction – except for the highly domain-dependent Entity Detection task – improving performance of each of the involved subtasks compared to state-of-the-art approaches. Furthermore, this work applies Natural Language Processing methods and Relation Extraction approaches to real world data unveiling challenges that do not occur in high quality newspaper corpora.

The Data Web has undergone a tremendous growth period. It currently consists of more then 3300 publicly available knowledge bases describing millions of resources from various domains, such as life sciences, government or geography, with over 89 billion facts. In the same way, the Document Web grew to the state where approximately 4.55 billion websites exist, 300 million photos are uploaded on Facebook as well as 3.5 billion Google searches are performed on average every day. However, there is a gap between the Document Web and the Data Web, since for example knowledge bases available on the Data Web are most commonly extracted from structured or semi-structured sources, but the majority of information available on the Web is contained in unstructured sources such as news articles, blog post, photos, forum discussions, etc. As a result, data on the Data Web not only misses a significant fragment of information but also suffers from a lack of actuality since typical extraction methods are time-consuming and can only be carried out periodically. Furthermore, provenance information is rarely taken into consideration and therefore gets lost in the transformation process. In addition, users are accustomed to entering keyword queries to satisfy their information needs. With the availability of machine-readable knowledge bases, lay users could be empowered to issue more specific questions and get more precise answers. In this thesis, we address the problem of Relation Extraction, one of the key challenges pertaining to closing the gap between the Document Web and the Data Web by four means. First, we present a distant supervision approach that allows finding multilingual natural language representations of formal relations already contained in the Data Web. We use these natural language representations to find sentences on the Document Web that contain unseen instances of this relation between two entities. Second, we address the problem of data actuality by presenting a real-time data stream RDF extraction framework and utilize this framework to extract RDF from RSS news feeds. Third, we present a novel fact validation algorithm, based on natural language representations, able to not only verify or falsify a given triple, but also to find trustworthy sources for it on the Web and estimating a time scope in which the triple holds true. The features used by this algorithm to determine if a website is indeed trustworthy are used as provenance information and therewith help to create metadata for facts in the Data Web. Finally, we present a question answering system that uses the natural language representations to map natural language question to formal SPARQL queries, allowing lay users to make use of the large amounts of data available on the Data Web to satisfy their information need.

This thesis aims to develop a Relation Extraction algorithm to extract knowledge out of automotive data. While most approaches to Relation Extraction are only evaluated on newspaper data dealing with general relations from the business world their applicability to other data sets is not well studied. Part I of this thesis deals with theoretical foundations of Information Extraction algorithms. Text mining cannot be seen as the simple application of data mining methods to textual data. Instead, sophisticated methods have to be employed to accurately extract knowledge from text which then can be mined using statistical methods from the field of data mining. Information Extraction itself can be divided into two subtasks: Entity Detection and Relation Extraction. The detection of entities is very domain-dependent due to terminology, abbreviations and general language use within the given domain. Thus, this task has to be solved for each domain employing thesauri or another type of lexicon. Supervised approaches to Named Entity Recognition will not achieve reasonable results unless they have been trained for the given type of data. The task of Relation Extraction can be basically approached by pattern-based and kernel-based algorithms. The latter achieve state-of-the-art results on newspaper data and point out the importance of linguistic features. In order to analyze relations contained in textual data, syntactic features like part-of-speech tags and syntactic parses are essential. Chapter 4 presents machine learning approaches and linguistic foundations being essential for syntactic annotation of textual data and Relation Extraction. Chapter 6 analyzes the performance of state-of-the-art algorithms of POS tagging, syntactic parsing and Relation Extraction on automotive data. The findings are: supervised methods trained on newspaper corpora do not achieve accurate results when being applied on automotive data. This is grounded in various reasons. Besides low-quality text, the nature of automotive relations states the main challenge. Automotive relation types of interest (e. g. component – symptom) are rather arbitrary compared to well-studied relation types like is-a or is-head-of. In order to achieve acceptable results, algorithms have to be trained directly on this kind of data. As the manual annotation of data for each language and data type is too costly and inflexible, unsupervised methods are the ones to rely on. Part II deals with the development of dedicated algorithms for all three essential tasks. Unsupervised POS tagging (Chapter 7) is a well-studied task and algorithms achieving accurate tagging exist. All of them do not disambiguate high frequency words, only out-of-lexicon words are disambiguated. Most high frequency words bear syntactic information and thus, it is very important to differentiate between their different functions. Especially domain languages contain ambiguous and high frequent words bearing semantic information (e. g. pump). In order to improve POS tagging, an algorithm for disambiguation is developed and used to enhance an existing state-of-the-art tagger. This approach is based on context clustering which is used to detect a word type’s different syntactic functions. Evaluation shows that tagging accuracy is raised significantly. An approach to unsupervised syntactic parsing (Chapter 8) is developed in order to suffice the requirements of Relation Extraction. These requirements include high precision results on nominal and prepositional phrases as they contain the entities being relevant for Relation Extraction. Furthermore, accurate shallow parsing is more desirable than deep binary parsing as it facilitates Relation Extraction more than deep parsing. Endocentric and exocentric constructions can be distinguished and improve proper phrase labeling. unsuParse is based on preferred positions of word types within phrases to detect phrase candidates. Iterating the detection of simple phrases successively induces deeper structures. The proposed algorithm fulfills all demanded criteria and achieves competitive results on standard evaluation setups. Syntactic Relation Extraction (Chapter 9) is an approach exploiting syntactic statistics and text characteristics to extract relations between previously annotated entities. The approach is based on entity distributions given in a corpus and thus, provides a possibility to extend text mining processes to new data in an unsupervised manner. Evaluation on two different languages and two different text types of the automotive domain shows that it achieves accurate results on repair order data. Results are less accurate on internet data, but the task of sentiment analysis and extraction of the opinion target can be mastered. Thus, the incorporation of internet data is possible and important as it provides useful insight into the customer\''s thoughts. To conclude, this thesis presents a complete unsupervised workflow for Relation Extraction – except for the highly domain-dependent Entity Detection task – improving performance of each of the involved subtasks compared to state-of-the-art approaches. Furthermore, this work applies Natural Language Processing methods and Relation Extraction approaches to real world data unveiling challenges that do not occur in high quality newspaper corpora.

Companies do not exist in isolation. They are embedded in structural relationships with each other. Mapping a given company’s relationships with other companies in terms of competitors, subsidiaries, suppliers, and customers are key to understanding a company’s major risk factors and opportunities. Conventionally, obtaining and staying up to date with this key knowledge was achieved by reading financial news and reports by highly skilled manual labor like a financial analyst. However, with the development of Natural Language Processing (NLP) and graph databases, it is now possible to systematically extract and store structured information from unstructured data sources. The current go-to method to effectively extract information uses supervised machine learning models, which require a large amount of labeled training data. The data labeling process is usually time-consuming and hard to get in a domain-specific area. This project explores an approach to construct a company domain-specific Knowledge Graph (KG) that contains company-related entities and relationships from the U.S. Securities and Exchange Commission (SEC) 10-K filings by combining a pre-trained general NLP with rule-based patterns in Named Entity Recognition (NER) and Relation Extraction (RE). This approach eliminates the time-consuming data-labeling task in the statistical approach, and by evaluating ten 10-k filings, the model has the overall Recall of 53.6%, Precision of 75.7%, and the F1-score of 62.8%. The result shows it is possible to extract company information using the hybrid methods, which does not require a large amount of labeled training data. However, the project requires the time-consuming process of finding lexical patterns from sentences to extract company-related entities and relationships. / Företag existerar inte som isolerade organisationer. De är inbäddade i strukturella relationer med varandra. Att kartlägga ett visst företags relationer med andra företag när det gäller konkurrenter, dotterbolag, leverantörer och kunder är nyckeln till att förstå företagets huvudsakliga riskfaktorer och möjligheter. Det konventionella sättet att hålla sig uppdaterad med denna viktiga kunskap var genom att läsa ekonomiska nyheter och rapporter från högkvalificerad manuell arbetskraft som till exempel en finansanalytiker. Men med utvecklingen av ”Natural Language Processing” (NLP) och grafdatabaser är det nu möjligt att systematiskt extrahera och lagra strukturerad information från ostrukturerade datakällor. Den nuvarande metoden för att effektivt extrahera information använder övervakade maskininlärningsmodeller som kräver en stor mängd märkta träningsdata. Datamärkningsprocessen är vanligtvis tidskrävande och svår att få i ett domänspecifikt område. Detta projekt utforskar ett tillvägagångssätt för att konstruera en företagsdomänspecifikt ”Knowledge Graph” (KG) som innehåller företagsrelaterade enheter och relationer från SEC 10-K-arkivering genom att kombinera en i förväg tränad allmän NLP med regelbaserade mönster i ”Named Entity Recognition” (NER) och ”Relation Extraction” (RE). Detta tillvägagångssätt eliminerar den tidskrävande datamärkningsuppgiften i det statistiska tillvägagångssättet och genom att utvärdera tio SEC 10-K arkiv har modellen den totala återkallelsen på 53,6 %, precision på 75,7 % och F1-poängen på 62,8 %. Resultatet visar att det är möjligt att extrahera företagsinformation med hybridmetoderna, vilket inte kräver en stor mängd märkta träningsdata. Projektet kräver dock en tidskrävande process för att hitta lexikala mönster från meningar för att extrahera företagsrelaterade enheter och relationer.

Seit Jahrhunderten wird menschliches Wissen in Form von natürlicher Sprache ausgetauscht und in Dokumenten schriftlich aufgezeichnet. In den letzten Jahren konnte man auf dem Gebiet der Lebenswissenschaften eine exponentielle Zunahme wissenschaftlicher Publikationen beobachten. Diese Dissertation untersucht die automatische Extraktion von Beziehungen zwischen Eigennamen. Innerhalb dieses Gebietes beschäftigt sich die Arbeit mit der Steigerung der Robustheit für die Relationsextraktion. Zunächst wird der Einsatz von Ensemble-Methoden anhand von Daten aus der "Drug-drug-interaction challenge 2013" evaluiert. Ensemble-Methoden erhöhen die Robustheit durch Aggregation unterschiedlicher Klassifikationssysteme zu einem Modell. Weiterhin wird in dieser Arbeit das Problem der Relationsextraktion auf Dokumenten mit unbekannten Texteigenschaften beschrieben. Es wird gezeigt, dass die Verwendung des halb-überwachten Lernverfahrens self training in solchen Fällen eine höhere Robustheit erzielt als die Nutzung eines Klassifikators, der lediglich auf einem manuell annotierten Korpus trainiert wurde. Zur Ermittlung der Robustheit wird das Verfahren des cross-learnings verwendet. Zuletzt wird die Verwendung von distant-supervision untersucht. Korpora, welche mit der distant-supervision-Methode erzeugt wurden, weisen ein inhärentes Rauschen auf und profitieren daher von robusten Relationsextraktionsverfahren. Es werden zwei verschiedene Methoden untersucht, die auf solchen Korpora trainiert werden. Beide Ansätze zeigen eine vergleichbare Leistung wie vollständig überwachte Klassifikatoren, welche mit dem cross-learning-Verfahren evaluiert wurden. Um die Nutzung von Ergebnissen der Informationsextraktion zu erleichtern, wurde die semantische Suchmaschine GeneView entwickelt. Anforderungen an die Rechenkapazität beim Erstellen von GeneView werden diskutiert und Anwendungen auf den von verschiedenen Text-Mining-Komponenten extrahierten Daten präsentiert. / For several centuries, a great wealth of human knowledge has been communicated by natural language, often recorded in written documents. In the life sciences, an exponential increase of scientific articles has been observed, hindering the effective and fast reconciliation of previous finding into current research projects. This thesis studies the automatic extraction of relationships between named entities. Within this topic, it focuses on increasing robustness for relationship extraction. First, we evaluate the use of ensemble methods to improve performance using data provided by the drug-drug-interaction challenge 2013. Ensemble methods aggregate several classifiers into one model, increasing robustness by reducing the risk of choosing an inappropriate single classifier. Second, this work discusses the problem of applying relationship extraction to documents with unknown text characteristics. Robustness of a text mining component is assessed by cross-learning, where a model is evaluated on a corpus different from the training corpus. We apply self-training, a semi-supervised learning technique, in order to increase cross-learning performance and show that it is more robust in comparison to a classifier trained on manually annotated text only. Third, we investigate the use of distant supervision to overcome the need of manually annotated training instances. Corpora derived by distant supervision are inherently noisy, thus benefiting from robust relationship extraction methods. We compare two different methods and show that both approaches achieve similar performance as fully supervised classifiers, evaluated in the cross-learning scenario. To facilitate the usage of information extraction results, including those developed within this thesis, we develop the semantic search engine GeneView. We discuss computational requirements to build this resource and present some applications utilizing the data extracted by different text-mining components.

Das Finden von zuverlässigen Informationen über gegebene Ereignisse aus großen und dynamischen Textsammlungen, wie dem Web, ist ein wichtiges Thema. Zum Beispiel sind Rettungsteams und Versicherungsunternehmen an prägnanten Fakten über Schäden nach Katastrophen interessiert, die heutzutage online in Web-Blogs, Zeitungsartikeln, Social Media etc. zu finden sind. Solche Fakten helfen, die erforderlichen Hilfsmaßnahmen zu bestimmen und unterstützen deren Koordination. Allerdings ist das Finden, Extrahieren und Aggregieren nützlicher Informationen ein hochkomplexes Unterfangen: Es erfordert die Ermittlung geeigneter Textquellen und deren zeitliche Einordung, die Extraktion relevanter Fakten in diesen Texten und deren Aggregation zu einer verdichteten Sicht auf die Ereignisse, trotz Inkonsistenzen, vagen Angaben und Veränderungen über die Zeit. In dieser Arbeit präsentieren und evaluieren wir Techniken und Lösungen für jedes dieser Probleme, eingebettet in ein vierstufiges Framework. Die angewandten Methoden beruhen auf Verfahren des Musterabgleichs, der Verarbeitung natürlicher Sprache und des maschinellen Lernens. Zusätzlich berichten wir über die Ergebnisse zweier Fallstudien, basierend auf dem Einsatz des gesamten Frameworks: Die Ermittlung von Daten über Erdbeben und Überschwemmungen aus Webdokumenten. Unsere Ergebnisse zeigen, dass es unter bestimmten Umständen möglich ist, automatisch zuverlässige und zeitgerechte Daten aus dem Internet zu erhalten. / Finding reliable information about given events from large and dynamic text collections, such as the web, is a topic of great interest. For instance, rescue teams and insurance companies are interested in concise facts about damages after disasters, which can be found today in web blogs, online newspaper articles, social media, etc. Knowing these facts helps to determine the required scale of relief operations and supports their coordination. However, finding, extracting, and condensing specific facts is a highly complex undertaking: It requires identifying appropriate textual sources and their temporal alignment, recognizing relevant facts within these texts, and aggregating extracted facts into a condensed answer despite inconsistencies, uncertainty, and changes over time. In this thesis, we present and evaluate techniques and solutions for each of these problems, embedded in a four-step framework. Applied methods are pattern matching, natural language processing, and machine learning. We also report the results for two case studies applying our entire framework: gathering data on earthquakes and floods from web documents. Our results show that it is, under certain circumstances, possible to automatically obtain reliable and timely data from the web.