The objective of this research is to present a set of powerful simulation, design, and characterization tools suitable for studying novel nanophotonic devices. The simulation tools include a three-dimensional finite-difference time-domain code adapted for parallel computing that allows for a wide range of simulation conditions and material properties to be studied, as well as a semi-analytical Green's function-based complex mode technique for studying loss in photonic crystal waveguides. The design tools consist of multifunctional photonic crystal-based template that has been simulated with nonlinear effects and measured experimentally, and planar slab waveguide structure that provides highly efficient second harmonic generation is a chip-scale device suitable for photonic integrated circuit applications. The characterization tool is composed of a phase-sensitive measurement system using a lock-in amplifier and high-precision optical stages, suitable for probing the optical characteristics of nanoscale devices. The high signal-to-noise ratio and phase shift data provided by the lock-in amplifier allow for accurate transmission measurements as well as a phase spectrum that contains information about the propagation behavior of the device beyond what is provided by the amplitude spectrum alone.

This thesis investigates the generation of second harmonic bulk waves in the presence of a free boundary. Second harmonic waves have proven to be useful in the field of nondestructive evaluation to detect fatigue in a material at an early stage. Since most experimental setups include a free surface, the influence of such a boundary is of significant practical interest. As a result, the objective of this research is to develop a quantitative understanding of the complete process of second harmonic generation at a free boundary. This research shows that the interaction of primary waves (with each other) in the nonlinear framework leads to the generation of second harmonic bulk waves. We distinguish between self-interaction of a single primary wave and the cross-interaction of two different primary waves. The proposed approach uses the perturbation method to solve the nonlinear equations of motion, and shows two fundamentally different solutions. In the case of resonance, the secondary waves grow with propagation distance. This is the most important practical case, since the growing amplitudes of these waves should be easier to experimentally measure. In the second, non-resonant case, the amplitudes of the secondary waves are constant. The complete process of second harmonic generation is analyzed for an incident Pand an incident SV-wave, with the primary and secondary fields given. Finally, the degenerate case of normal incidence is presented. Normal and oblique incidence are compared with regard to their feasibility in experimental setups. The specific behavior of second harmonic waves propagating in aluminum is numerically determined. These results enable a variety of physical insights and conclusions to be drawn from the analytical and numerical investigations.

Spectroscopic second-harmonic generation (SHG) and reflectance-anisotropy spectroscopy (RAS) are used to probe molecular adsorption on clean reconstructed single-domain stepped Si(001) in ultra-high vacuum (UHV). We implement a simplified bond hyperpolarizability model (SBHM) as a common microscopic analysis for SHG and RAS. Three different scenarios are studied: (i) The dissociative adsorption of molecular hydrogen on dangling bonds of D[subscript B] step-edges. (ii) Structural changes to rebonded r-D[subscript B] steps induced by exposure to atomic hydrogen. (iii) The adsorption of cyclopentene on Si(001)(2x1) terrace dimers in a [2+2] cycloaddition pathway. Using the SBHM we develop a new optical fingerprinting method to isolate, identify and monitor individual types of bonds (e.g. dimers, rebonds, dangling bonds, backbonds) and their chemical activity on a single-domain stepped Si(001) surface using nonresonant, but rotationally-anisotropic, second-harmonic generation (RA-SHG). The methods presented here will be applicable to many material systems and allow to track, in-situ and in real-time, the chemical action of adsorbates on surfaces. / text

Nonlinear coherent scattering phenomena from single nanoparticles have been recently proposed as alternative processes for fluorescence in multiphoton microscopy staining. Commonly applied nanoscale materials, however, have reached a certain limit in size dependent detection efficiency of weak nonlinear optical signals. None of the recent efforts in detection of second-harmonic generation (SHG), the lowest order nonlinear process, have been able to cross a ~40 nm size barrier for nanoparticles (NPs), thus remaining at the level of "large" nanoscatterers, even when resorting to the most sensitive detection techniques such as single-photon counting technology. As we realize now, this size limitation can be significantly lowered when replacing dielectric insulators or wide gap semiconductors by direct-gap semiconducting quantum dots (QDs). Herein, a new type of highly nonlinear nanoprobes is engineered in order to surpass above mentioned size barrier at the single nanoparticle scale. We consider two-photon resonant excitation in individual zinc-blende CdTe QDs of about 12.5 nm diameter, which provide efficient coherent SHG radiation, as high as 105 Hz, furthermore exhibiting remarkable sensitivity to spatial orientation of their octupolar crystalline lattice. Moreover, quantum confinement effects have been found to strongly contribute to the second-order nonlinear optical susceptibility χ(2) features. Quantitative characterization of the χ(2) of QDs by way of their spectral dispersion and size dependence is therefore undertaken by single particle spectroscopy and ensemble Hyper-Rayleigh Scattering (HRS) studies. We prove that under appropriate conditions, χ(2) of quantum confined semiconducting structures can significantly exceed that of bulk. Furthermore, a novel type of semiconducting hybrid rod-on-dot (RD) QDs is developed by building up on crystalline moieties of different symmetries, in order to increase their effective quadratic nonlinearity while maintaining their size close to a strong quantum confinement regime. The new complex hybrid χ(2) tensor is analyzed by interfering the susceptibilities from each component, considering different shape and point group symmetries associated to octupolar and dipolar crystalline structures. Significant SHG enhancement is consequently observed, exceeding that of mono-compound QDs, due to a coupling between two nonlinear materials and slower decoherence, which we attribute to the induced spatial charge separation upon photoexcitation.

Histology has long recognized the intimate link between structure and function. Over centuries histologists have utilized an assortment of optical microscopy techniques to elucidate functional attributes of tissues through investigating tissue architecture. This thesis includes developments in the field of nonlinear optical microscopy for use in histology and pathology. The main contributions focused on the study of fibrillar collagen in the extracellular matrix (ECM) with polarization-dependent second harmonic generation (P-SHG) microscopy and the study of harmonophore-stained cellular nuclei with third harmonic generation (THG) microscopy. The P-SHG microscopy technique, “polarization-in, polarization-out” (PIPO), was developed to accurately determine the second-order polarization properties of thin tissue sections. The polarization instrumentation was implemented into a nonlinear optical microscope and a custom fitting algorithm extracted ratios of the second-order nonlinear susceptibility elements at every pixel of an obtained image. Hierarchical organization, at every level of structure, can contribute significantly to the macroscopic second-order polarization properties of fibrillar collagen in the ECM and quantifiable differences between the various tissue architectures were observed. A framework was developed, based on the collagen hierarchical organization, to interpret the submicron polarization properties of various tissues. Complimentary to the P-SHG study of connective tissue, the structure of hematoxylin and eosin (H&E) stained nuclei was revealed by THG microscopy. Imaging the 3D organization of nuclei was possible using the inherent optical sectioning provided by nonlinear microscopy. The origin of THG was investigated with spectrally- and temporally-resolved measurements, as well as the THG ratio method. A rather complex situation involving multiple dye complexes was revealed. The structure of dye aggregates was investigated with THG PIPO microscopy. The techniques of PIPO and harmonophore-stained harmonic generation microscopy show great potential for ultimately furthering understanding of tissue structure and function. H&E stained tissue investigations with THG microscopy has applications as a tool for cancer diagnostics. PIPO can elucidate the symmetry and organization of materials beyond tissues, including starch, nanowires, and protein crystals. In pathology, the developed collagen framework has strong implications, as collagen is recognized as playing a more active role in a number of diseases including idiopathic pulmonary fibrosis, wound repair, and tumour development and progression.

Histology has long recognized the intimate link between structure and function. Over centuries histologists have utilized an assortment of optical microscopy techniques to elucidate functional attributes of tissues through investigating tissue architecture. This thesis includes developments in the field of nonlinear optical microscopy for use in histology and pathology. The main contributions focused on the study of fibrillar collagen in the extracellular matrix (ECM) with polarization-dependent second harmonic generation (P-SHG) microscopy and the study of harmonophore-stained cellular nuclei with third harmonic generation (THG) microscopy. The P-SHG microscopy technique, “polarization-in, polarization-out” (PIPO), was developed to accurately determine the second-order polarization properties of thin tissue sections. The polarization instrumentation was implemented into a nonlinear optical microscope and a custom fitting algorithm extracted ratios of the second-order nonlinear susceptibility elements at every pixel of an obtained image. Hierarchical organization, at every level of structure, can contribute significantly to the macroscopic second-order polarization properties of fibrillar collagen in the ECM and quantifiable differences between the various tissue architectures were observed. A framework was developed, based on the collagen hierarchical organization, to interpret the submicron polarization properties of various tissues. Complimentary to the P-SHG study of connective tissue, the structure of hematoxylin and eosin (H&E) stained nuclei was revealed by THG microscopy. Imaging the 3D organization of nuclei was possible using the inherent optical sectioning provided by nonlinear microscopy. The origin of THG was investigated with spectrally- and temporally-resolved measurements, as well as the THG ratio method. A rather complex situation involving multiple dye complexes was revealed. The structure of dye aggregates was investigated with THG PIPO microscopy. The techniques of PIPO and harmonophore-stained harmonic generation microscopy show great potential for ultimately furthering understanding of tissue structure and function. H&E stained tissue investigations with THG microscopy has applications as a tool for cancer diagnostics. PIPO can elucidate the symmetry and organization of materials beyond tissues, including starch, nanowires, and protein crystals. In pathology, the developed collagen framework has strong implications, as collagen is recognized as playing a more active role in a number of diseases including idiopathic pulmonary fibrosis, wound repair, and tumour development and progression.

[pt] Neste trabalho apresenta-se a implementação de um sistema de medição de pulsos ópticos curtos gerados por lasers semicondutores. Através de uma técnica indireta de medida, que usa a radiação de segundo harmônico gerada internamente nesses lasers, a duração dos pulsos curtos de luz é estimada. São apresentadas as principais considerações teóricas e experimentais envolvidas com a emissão de segundo harmônico em diodos lasers e são discutidas as principais limitações da técnica. Mostra-se que embora a determinação exata da duração dos pulsos exija medidas adicionais, é possível inferir com boa resolução temporal a duração de pulsos ópticos gerados nos regimes de chaveamento de ganho e mode-locking. / [en] In this work the implementation of a measurement system of short optical pulses generated by semiconductor lasers is presented. This indirect method estimates the pulse duration using the internally generated second harmonic radiation from these lasers. The main theoretical and experimental considerations related with the second harmonic emission are also presented. Although the precise pulse duration requires aditional measurements it is possible to estimate the duration of optical pulses generated by gain-switching and mode-loching regimes with good time-resolution.

Les nanocristaux à structure non-centrosymétrique présentent des propriétés optiques non linéaires prometteuses pour une utilisation en tant que marqueurs optiques en imagerie biomédicale, avec un intérêt significatif en termes de suivi sur de longues durées et de profondeur de pénétration dans les tissus biologiques. Le développement de ces marqueurs nécessite la détermination de leurs efficacités optiques non linéaires afin de pouvoir sélectionner les nanocristaux les plus prometteurs. Pour cela, la technique de diffusion Hyper-Rayleigh a été adaptée à la caractérisation de suspensions de nanoparticules (BaTiO3, KNbO3, KTP, LiNbO3 et ZnO, BiFeO3) pour lesquelles l’influence de paramètres comme la taille, la concentration ou l’état d’agrégation a été analysée et discutée. Les nanocristaux de BiFeO3 possèdent une efficacité optique non linéaire largement supérieure aux autres particules, démontrant leur potentiel pour la réalisation de nano-sondes optiques particulièrement performantes. Des mesures résolues en polarisation ont également été mises en œuvre pour déterminer les coefficients optiques non linéaires indépendants des particules étudiées. Dans ce cadre, une étude a permis de mettre en évidence l’influence de la forme des nanocristaux sur cette réponse. / Non-centrosymetric nanocrystals show promising nonlinear optical properties for being used as optical labels in bio-imaging applications, with significant interest for observations of long duration and for penetration depth into biological tissues. The development of such biomarkers requires the determination of their nonlinear optical properties to select the best potential markers. In this thesis, Hyper-Rayleigh Scattering (HRS) technique is used to determine nonlinear efficiencies of several nanocystals (BaTiO3, KNbO3, KTP, LiNbO3, ZnO and BiFeO3). These ensemble measurements have been performed on nanocrystals suspensions, for which the influence of parameters such as size, concentration and aggregation state was discussed. BiFeO3nanocrystals offer the best nonlinear optical efficiency compared to other particles, showing their potential as efficient optical biomarkers. Polarisation-resolved measurements have also been performed to retrieve individual coefficients of the nonlinear tensor of the investigated materials and influent parameters such as nanocrystals shape have been identified.

O diagnóstico preciso das características morfológicas e metabólicas de um tecido e/ou órgão com a finalidade de identificar alterações patológicas, ou avaliar um determinado tratamento, é de grande importância nas áreas de biologia e medicina. Uma excelente alternativa para este diagnóstico, e que permite uma visualização com resolução celular, são imagens de microscopia óptica. Tradicionalmente, analisam-se as características celulares através de processos histológicos; contudo, mais recentemente essa mesma análise tornou-se possível em tecidos sem a necessidade deste preparo histológico. Fenômenos de óptica não-linear, como a fluorescência devido à absorção de dois fótons e a geração de segundo harmônico, são exemplos de processos que podem ser realizados sem preparo histológico com o objetivo de se obter imagens microscópicas em diferentes profundidades com resolução celular. Este projeto teve por objetivo desenvolver um microscópio óptico de varredura a laser baseado em processos ópticos não lineares, para adquirir imagens de tecidos e órgãos, nas condições in vitro, in vivo e ex vivo. O microscópio óptico montado é composto por: um laser de pulsos ultracurtos sintonizável (Ti:Safira), um sistema de varredura espacial (dois espelhos conectados a galvanômetros e conjugados por dois espelhos esféricos, para varredura lateral, e uma plataforma piezoelétrica para varredura axial), uma lente objetiva (20X, abertura numérica de 1,0, imersão em água e distância funcional de 2,0 mm) e um sistema de aquisição e controle. A resolução lateral obtida foi de (0,8±0,1) μm e axial de (4,4±1,5) μm, suficiente para a realização de imagens com resolução subcelular de tecidos biológicos. Imagens de fluorescência e por geração de segundo harmônico foram obtidas com sucesso a partir de tecido ex vivo de pele e fígado de rato, pele de porco e de membrana corioalantóica. Estas imagens revelaram aspectos tidos como relevantes na análise morfo-histopatológica – como estruturas nucleares e de membrana, e a presença de colágeno, e com vantagens como coleta de informação vinda de diferentes camadas do tecido. A montagem desse sistema apresenta potencial para contribuir em estudos em diagnóstico e tratamento de lesões sejam feitos de modo que, no futuro, essa análise resulte em diagnósticos mais precisos e tratamentos mais efetivos. / Accurate diagnosis of the morphological and metabolic conditions of a tissue and/or an organ is essential to define the presence of pathological changes, and to evaluate the response during a number of treatments. The use of optical techniques for biological tissue imaging is an excellent alternative for this purpose. Such techniques allow non-invasive diagnostic procedures, with cellular resolution, and usually provide almost instantaneous response. The use of nonlinear optical techniques such as fluorescence promoted by two-photon absorption is one example of optical technique in which we obtain images of living tissue with spatial resolution at cellular level. The purpose of this study is the assembly and characterization of a custom-made non-linear microscope. This microscope allows customized adjustment for in vitro, in vivo and ex vivo imaging of biological samples. The excitation is done using a tunable femtosecond Ti:Sapphire laser. Two galvanometer mirrors conjugated by two spherical mirrors are used for the lateral scan and for the axial scan a piezoeletric stage is utilized. The light is focused in tissue by an 20X objective lens, in water immersion, numerical aperture of 1.0, and working distance of 2.0 mm. The lateral resolution obtained was (0.8 ± 0.1) μm and (4.4 ± 1.5) μm for axial resolution, which is sufficient for images with sub-cellular resolution to be achieved in biological tissues. Fluorescence and second harmonic generation images were performed using epithelial and hepatic tissue. Those images revealed aspects considered relevant in morpho-histopathology – such as nuclear and citoplasm membrane structures, and the presence of collagen. By means of the microscope it is possible to have images in different depths of tissues with sub-cellular resolution. The assembly of such an equipment shall represent a potential contribution to diagnostics and lesion treatment fields, so that it may result in more precise detection of diseases and more effective treatments in the future.

Filmes ultrafinos de polímeros que contém azocromóforos são importantes para muitas aplicações como armazenamento óptico, formação de grades de relevo superficiais, alinhamento de camadas de cristal líquido e dispositivos ópticos com propriedades não-lineares. Dentre as muitas técnicas de fabricação de filmes orgânicos ultrafinos, a técnica de Automontagem eletrostática camada a camada (Layer-by-Layer, LBL) é muito atrativa devido a sua simplicidade e versatilidade, permitindo o controle na espessura e na composição dos filmes em escalas nanométricas. Contudo, a completa caracterização estrutural de tais filmes enfrenta dificuldades devido à falta de técnicas experimentais apropriadas. Utilizamos a Geração de Segundo Harmônico (SHG) para estudar a orientação molecular de filmes automontados de um polieletrólito catiônico (PAH - Poli(alilamina hidroclorada)) e um polieletrólito aniônico contendo azocromóforos como grupos laterais (Ma-co-DR13) sobre substrato de vidro. O sinal de SHG é proporcional à susceptibilidade não-linear de segunda ordem do filme, que por sua vez depende da distribuição orientacional dos azocromóforos nesse filme. Os resultados indicam que existem uma orientação preferencial dos azocromóforos, que leva a uma não-linearidade óptica significativa. Entretanto, a intensidade do sinal e a anisotropia não são homogêneas por toda a amostra, indicando a presença de domínios orientacionais, que é verificado por meio da Microscopia a Ângulo de Brewster (BAM). O sinal médio de SHG não aumenta com a espessura do filme, indicando que a ordem orientacional das sucessivas bicamadas são independentes. Analisando o sinal de SHG em função das polarizações de saída e entrada, alguns parâmetros da distribuição orientacional dos azocromóforos podem ser deduzidos. Ajustando as medidas de SHG a uma distribuição modelo concluímos que os cromóforos possuem uma certa distribuição angular com um ângulo médio em relação à superfície do plano de aproximadamente 40° e uma pequena anisotropia ao longo do plano do filme. Utilizamos também o Método da Máxima Entropia (MEM) para determinar a distribuição mais larga possível compatível com nossos dados experimentais e comparar então com a distribuição modelo obtida através dos procedimentos de ajuste. / Ultrathin films of polymers containing azochromophores are important for many applications such as optical data storage, formation of surface relief gratings, liquid crystal alignment layers and non-linear optical devices. Among several techniques for fabricating organic thin films, the Layer-By-Layer electrostatic self-assembly (LBL) is very attractive due to its simplicity and versatility, allowing one to control film thickness and composition in the nanometer scale. However, thorough structural characterization of such films is often difficult due to lack of appropriate experimental techniques. We have used optical second-harmonic generation (SHG) to study the molecular orientation of Layer-by-Layer films of a cationic polyelectrolyte ((PAH - Poly(allylamine hydrochloride)) and a anionic polyelectrolyte containing azochromophores with azo side groups (PAH/Ma-co-DR13) on a glass substrate. The SHG signal is proportional to the second-order nonlinear susceptibility of the film, which in turn depends on the orientational distribution of the azo chromophores in the film. The results indicate that there is a preferential orientation of the azo chromophores in the film, leading to a significant optical nonlinearity. However, both the signal strength and its anisotropy are not homogeneous throughout the sample, indicating the presence of orientational domains. This is verified through Brewster Angle Microscopy (BAM). The average SHG signal does not increase with film thickness, indicating that the orientational order of successive bilayers are independent. Analyzing the SHG signal as a function of the input and output polarizations, a few parameters of the azochromophore orientational distribution can be deduced. Fitting the SHG signal to a simple model distribution, we have concluded that the chromophores have an angular distribution with a mean tilt from the surface plane of approximately 41° and a slight in-plane anisotropy. We have also used the Maximum-Entropy Method (MEM) to determine the widest orientational distribution compatible with our data and compared it to the model distribution obtained by the fitting procedure.