Leaf senescence is an active process required for plant survival, and it is flexibly controlled, allowing plant adaptation to environmental conditions. Although senescence is largely an age-dependent process, it can be triggered by environmental signals and stresses. Leaf senescence coordinates the breakdown and turnover of many cellular components, allowing a massive remobilization and recycling of nutrients from senescing tissues to other organs (e.g., young leaves, roots, and seeds), thus enhancing the fitness of the plant. Such metabolic coordination requires a tight regulation of gene expression. One important mechanism for the regulation of gene expression is at the transcriptional level via transcription factors (TFs). The NAC TF family (NAM, ATAF, CUC) includes various members that show elevated expression during senescence, including ORE1 (ANAC092/AtNAC2) among others. ORE1 was first reported in a screen for mutants with delayed senescence (oresara1, 2, 3, and 11). It was named after the Korean word “oresara,” meaning “long-living,” and abbreviated to ORE1, 2, 3, and 11, respectively. Although the pivotal role of ORE1 in controlling leaf senescence has recently been demonstrated, the underlying molecular mechanisms and the pathways it regulates are still poorly understood. To unravel the signaling cascade through which ORE1 exerts its function, we analyzed particular features of regulatory pathways up-stream and down-stream of ORE1. We identified characteristic spatial and temporal expression patterns of ORE1 that are conserved in Arabidopsis thaliana and Nicotiana tabacum and that link ORE1 expression to senescence as well as to salt stress. We proved that ORE1 positively regulates natural and dark-induced senescence. Molecular characterization of the ORE1 promoter in silico and experimentally suggested a role of the 5’UTR in mediating ORE1 expression. ORE1 is a putative substrate of a calcium-dependent protein kinase named CKOR (unpublished data). Promising data revealed a positive regulation of putative ORE1 targets by CKOR, suggesting the phosphorylation of ORE1 as a requirement for its regulation. Additionally, as part of the ORE1 up-stream regulatory pathway, we identified the NAC TF ATAF1 which was able to transactivate the ORE1 promoter in vivo. Expression studies using chemically inducible ORE1 overexpression lines and transactivation assays employing leaf mesophyll cell protoplasts provided information on target genes whose expression was rapidly induced upon ORE1 induction. First, a set of target genes was established and referred to as early responding in the ORE1 regulatory network. The consensus binding site (BS) of ORE1 was characterized. Analysis of some putative targets revealed the presence of ORE1 BSs in their promoters and the in vitro and in vivo binding of ORE1 to their promoters. Among these putative target genes, BIFUNCTIONAL NUCLEASE I (BFN1) and VND-Interacting2 (VNI2) were further characterized. The expression of BFN1 was found to be dependent on the presence of ORE1. Our results provide convincing data which support a role for BFN1 as a direct target of ORE1. Characterization of VNI2 in age-dependent and stress-induced senescence revealed ORE1 as a key up-stream regulator since it can bind and activate VNI2 expression in vivo and in vitro. Furthermore, VNI2 was able to promote or delay senescence depending on the presence of an activation domain located in its C-terminal region. The plasticity of this gene might include alternative splicing (AS) to regulate its function in different organs and at different developmental stages, particularly during senescence. A model is proposed on the molecular mechanism governing the dual role of VNI2 during senescence. / Der Alterungsprozess lebender Organismen wird seit vielen Jahren wissenschaftlich untersucht. In Pflanzen wird der Alterungsprozess Seneszenz genannt. Er ist für das Überleben der Pflanze von großer Bedeutung. Dennoch ist unser Wissen über die molekularen Mechanismen der Blattseneszenz, dessen komplexe Steuerung und die Wechselwirkungen mit Umweltsignale noch sehr limitiert. Ein wichtiges Steuerungselement besteht in der Aktivierung bestimmter Transkriptionsfaktoren (TFs) die während der Seneszenz unterschiedlich exprimiert werden. Aus der Literatur ist bekannt, dass Mitglieder der NAC TF Familie (NAM/ATAF/CUC) an der Regulation der Seneszenz bei Pflanzen beteiligt sind. ORE1 (ANAC092/AtNAC2), ein NAC TF mit erhöhter Genexpression während der Seneszenz, wurde erstmals in Mutanten mit verzögerte Seneszenz beschrieben, die molekularen Mechanismen, wie ORE1 die Seneszenz kontrolliert und die Stoffwechselwege reguliert, sind aber noch weitgehend unbekannt. Die Arbeiten im Rahmen dieser Dissertation wurden durchgeführt, um einen tieferen Einblick in die Regulationsmechanismen von ORE1 auf natürliche, dunkel induzierte sowie Salzstress-induzierte Seneszenz zu erhalten. Ergebnisse von Untersuchungen an zwei unterschiedlichen Pflanzenspezies (Arabidopsis thalinana und Nicotiana tabacum) deuten auf ein ähnliches Expressionsmuster von ORE1 während der natürlichen als auch der Salz-induzierten Seneszenz hin. In der Promotorregion von ORE1 wurde ein für natürliche Seneszenz charakteristisches Muster identifiziert. In vivo Analysen ergaben darüber hinaus. Hinweise auf zwei weitere ORE1 Regulatoren. Debei handelt es sich umeinen weiteren NAC TF (ATAF1) und (ii) CKOR, einer Calcium-abhängige Protein-Kinase (CDPK).In weiteren Studien wurden sechs Gene identifiziert, die durch ORE1 reguliert werden. In den Promotoren dieser Gene wurden entsprechende Bindestellen für ORE1 lokalisiert. Die ORE1-Bindung an die Promotoren wurde daraufhin sowohl in vitro als auch in vivo verifiziert. Zwei dieser Gene, die BIFUNCTIONAL Nuclease I (BFNI) und VND-Interacting2 (VNI2), wurden zudem auf molekularer und physiologischer Ebene untersucht.

Flavonoids are a large class of dietary polyphenols that have emerged as candidate agents for chemoprevention in prostate cancer. Despite the large number of known flavonoids (over 9000), only a few have been studied in prostate cancer to date. The work presented in this thesis describes the identification of novel anti-proliferative flavonoids, their molecular effects on cell cycle and related proliferation and survival pathways, and their chemopreventive properties in a murine model of prostate carcinogenesis. We identified several novel flavonoids with potent anti-proliferative effects in human prostate cancer cells in vitro. Non-prostate cell lines were generally resistant to the effect of these flavonoids. Two of the most potent flavonoids identified, 2,2-dihydroxychalcone (DHC) and fisetin, induced S and G2 phase cell cycle arrest in LNCaP and PC3 prostate cancer cells. Gene expression studies employing oligonucleotide microarray demonstrated profound down-regulation in gene expression of 75 key cell cycle (predominantly G2 and M phase) genes by DHC and fisetin, and the enhanced expression of 50 stress-response genes with important roles in cell proliferation and survival. DHC and fisetin induced apoptosis, but not accelerated senescence, in prostate cancer cells. The chemopreventive effect of 4 flavonoids identified from the in vitro studies was examined in an autochthonous murine model of prostate cancer (TRAMP). Mice were administered diets supplemented with 1% DHC, 1% fisetin or a combination of flavonoids (0.25% DHC, 0.25% fisetin, 0.25% quercetin, 0.25% luteolin) for 32 weeks. We demonstrated a significant reduction in genitourinary weight, and a reduction in prostate cancer grade in mice administered 1% DHC and combination diets. Flavonoid supplementation was, however, associated with gastrointestinal toxicity in some mice. Liquid chromatography-mass spectrometry demonstrated the accumulation of high levels of flavonoid in the prostates of TRAMP mice. These findings lay the foundation for further studies of flavonoids in clinical chemoprevention trials.

In most eukaryotes, chromosomes ends are protected by telomeres which are formed by repetitive DNA, specialized binding proteins, and higher order structures. Telomeres become shorter following replication due to the positioning and degradation of terminal RNA primers, as well as resection by nucleases. Extensive telomere shortening over many cell cycles elicits a DNA damage checkpoint that culminates in senescence or, in the absence of tumor suppressor pathways, apoptosis. These effects block the expansion of cells with unstable genomes, but can also precipitate disease in tissues that rely on regeneration for function. In many unicellular eukaryotes and proliferative human cells including cancer cells, telomeres can be maintained by the telomerase reverse transcriptase (TERT) and its associated RNA (TR). The elongation of telomeric DNA by telomerase depends on the telomerase essential N-terminal (TEN) and C terminal reverse transcriptase (RT) domains. We found that human TEN interacted with single-stranded telomeric DNA and restored function, in trans, to an hTERT mutant lacking hTEN. Telomerase required hTEN residues for activity, telomere maintenance, and extension of cellular replicative lifespan. Two inactive hTERT variants bearing mutations in TEN and RT domains, respectively, cooperated to regenerate telomerase activity in vitro. hTEN interacted with several regions of hTERT suggesting that dimerization may occur via TEN-TERT interactions. The in vivo defect of certain hTEN mutants may involve an inability to interact with factors that recruit the enzyme to the telomere and/or stimulate activity. Human homologs of the S. cerevisiae recruitment factor Est1 interacted with telomerase in a species-specific manner. The TPR domain of hEST1A interacted with the N-terminus of hTERT. The TPR domain of ScEst1 was required for telomere length maintenance by telomerase, and, paradoxically, also negatively regulated telomere length. In preliminary experiments, hTERT interacted with hPOT1/hTPP1. This interaction may stimulate the elongation of telomeres by telomerase. The DNA and protein interactions described herein expand our knowledge of telomerase and present new targets for the manipulation of telomerase function in human disease.

Background. Radiation therapy is an important treatment regimen for malignant disease. Radiation therapy uses ionizing radiation to induce DNA damage in tumor cells in order to kill them. Tumor cells are more sensitive than normal cells, since they have an increased proliferation rate and often lack the ability to properly repair the induced damage. Radiation can be delivered by an external source outside the body, by brachytherapy delivered inside the patient near the tumor, or systemically by injection into the blood stream. When delivered systemically, the radiation is administered as radioisotope alone or conjugated to antibodies targeting tumor antigens (radioimmunotherapy). Radiotherapy (RT) usually is administered using high doses, causing necrotic cell death. Low doses of radiation (by RT or RIT) have been observed to induce different types of cell deaths, like apoptosis, mitotic catastrophe or senescence.Aims. We wanted to elucidate the molecular and cellular events responsible for the induction of cell death in cells of different origin and p53 status. We also wanted to identify the kinetics behind gene expression alterations induced in response to irradiation and correlate these to cell death specific molecular and cellular events. In the end this research aims to identify key regulators of the main radiation induced cell death modalities in order to improve our understanding and potentially use this knowledge to increase treatment efficacy of radiation therapy. Methods. Four different cell lines were used in these studies to elucidate the role of p53 status cell origin in radiation induced cell death. HeLa Hep2 tumor cells have been used previously in our group in several RIT and RT studies. During these studies we observed morphological alterations in shrinking tumors that were typical for mitotic catastrophe. This led to studies on the underlying mechanisms causing these aberrations. Isogenic solid tumor cell lines HCT116 p53 +/+ and HCT116 p53 -/- were included to further elucidate the role of p53, and also to study senescence, one of the main outcomes in irradiated tumor cells. MOLT-4 was finally included to compare these finding to classical apoptosis. Gene expression analysis was done using Illumina bead chip arrays, and pathway analysis was performed using MetaCore (Thomson Reuters). Results. In paper I, II, and III, transient G2/M arrests were observed in HeLa Hep2 and HCT116 p53 -/- cells following irradiation. The lack of p53 in these cells caused checkpoint adaptation due to an unscheduled accumulation of genes promoting mitosis. Anaphase bridges were observedivin HeLa Hep2 cells, as a consequence of premature mitotic entry with unrepaired DNA damage. Centrosome amplification, as well as deregulation of genes involved in centrosome amplification and clustering was observed in both cell lines. We observed changes in expression of several genes responsible for maintaining the spindle assembly checkpoint (SAC) arrest. A prolonged SAC arrest has been shown to be important for execution of mitotic catastrophe. SAC activation was followed by mitotic slippage and a subsequent failure of cytokinesis. We observed multipolar mitoses (both cell lines), multiple- and micronuclei (HeLa Hep2, paper I), and an increased frequency of tetraploid cells (HeLa Hep2 and HCT116 p53 -/- cells). A fraction of HeLa Hep2 cells also displayed apoptotic features, including caspase activation and DNA fragmentation (paper I). These findings indicate that mitotic catastrophe and the activation of a delayed type of apoptosis are involved in cell death following RIT.HCT116 p53 +/+ cells induced both G1 and G2 arrest following irradiation (paper III). Gene expression analysis revealed significantly decreased expression of genes responsible for cell cycle progression (pronounced decrease compared to HeLa Hep2 and HCT116 p53 -/-), especially mitotic genes. The prolonged arrest transitioned into senescence starting 3 days following irradiation and peaked after 7 days. Several genes associated with SASP were upregulated in the same time frame as senescence was induced, further supporting the fact that senescence is the main radiation induced response in HCT116 p53 +/+ cells.MOLT-4 cells, similar to HCT116 p53 +/+ cells, induced both G1 and G2 arrests in response to irradiation (paper IV). Morphological studies revealed apoptotic features like shrunken cells with condensed DNA. Caspase assays showed increased activity of caspases -3, -8, and -9. Gene expression analysis confirmed an increased expression of genes important for both extrinsic (FAS and TRAIL) and intrinsic (BAX) apoptosis. Furthermore, changed expression also included genes involved in cell cycle checkpoints and their regulation and genes important for T-cell activation/proliferation. Conclusions. RIT is successfully used to treat lymphoma, but treatment of solid tumors with RIT is still difficult. This thesis elucidates cellular alterations characteristic for the 3 main radiation death modalities, i.e. mitotic catastrophe, senescence and apoptosis. Furthermore, cell death specific traits are correlated to alterations in gene expression. Treatment efficacy can potentially be improved by finding key cell death mediators to inhibit in combination with radiation. / Bakgrund. Strålbehandling används för att bota eller lindra symptomen av cancer och består av joniserande strålning vars syfte är att skada DNAt i cellerna vilket leder till att de dör. Tumörceller är känsligare för strålning än normala celler eftersom de delar sig i snabbare takt och ofta saknar förmågan att reparera skadorna som uppstår. Det finns flera typer av strålbehandling: extern strålbehandling, d.v.s. när strålkällan är placerad utanför kroppen, brachyterapi, när strålkällan placeras i en kapsel inuti kroppen, eller systemisk strålning, där en radioisotop injiceras, antingen själv eller kopplad till en antikropp, då kallad radioimmunoterapi (RIT). Vid extern strålbehandling använder man sig ofta av relativt höga doser av strålning under ett kortare tidsintervall. Dessa celler dör ofta en nekrosliknande död. Med RIT kan man behandla patienterna med lägre doser under en längre tid och strålningen kan riktas specifikt till tumören, vilket minskar risken för bieffekter. Dessa celler dör av andra former av celldöd, apoptos, senescence eller mitotisk katastrof. Apoptos är för många synonymt med programmerad celldöd, och sker till exempel i respons till DNA skada. En apoptotisk cell känns igen på sitt utseende med fragmenterat DNA, nedbrutet cytoskelett och apoptotiska kroppar. Senescence är associerat med cellens åldrande men kan även orsakas av DNA-skador, och är en vanlig form av celldöd hos solida tumörceller med funktionell p53-signalering. Bestrålade solida tumörceller som saknar p53-signalering, antingen på grund av mutationer eller på grund av virusinducerad inaktivering, dör oftast i en helt annan celldöd, kallad mitotisk katastrof. Avsaknad av p53 leder till att en cell som erhållit skador på DNAt inte klarar av att uppehålla cellcykeln länge nog för att reparera skadorna. Inte heller apoptos induceras, eftersom p53 saknas. Detta leder till att cellen kommer att gå in i mitos med skador i sitt DNA som ej hunnit repareras. Celler i mitotisk katastrof har ett väldigt typiskt utseende med multipla kärnor, mikrokärnor (kromosomrester), multipla centrosomer och multipolära mitotiska spindlar. En del celler dör i mitosen medan andra försöker dela sig och kan överleva i flera generationer till, dock med skador på DNA. Målet med denna avhandling var att utreda de molekylära och transkriptionella mekanismerna bakom strålningsinducerad celldöd, och p53s roll i detta. Dessa studier kan så småningom leda till att viktiga regulatoriska proteiner av de strålnigsinducerade celldödsmekanismerna kan identifieras. Specifika inhibitorer riktade mot dessa proteiner kan med ökad kunskap strategiskt användas i kombination med strålning och potentiellt leda till förbättrade behandlingseffekter. Metoder. Vi använde fyra cellinjer med olika bakgrund och p53 status. Vi har tidigare studerat HeLa Hep2 (en solid tumörcellslinje infekterad medviHPV som slår ut funktionen av p53) och sett vid både RT och RIT studier, att cellernas morfologi avviker från klassiks apoptos (stora celler med stora mängder DNA, istället för små celler med lite DNA). Detta ledde till studier av mekanismerna bakom denna avvikande cellmorfologin, som är typisk för mitotisk katastrof. Vi utökade studien med HCT116 p53 +/+ och HCT116 p53 -/- som är identiska så när som på p53, där ena cellinjen saknar denna gen. Detta skulle ge ökad förståelse för p53s roll vid mitotisk katastrof och även visa mekanismerna bakom senescence, en annan vanlig celldödsmekanism i strålade solida tumörceller. Även MOLT-4 inkluderades i studien för att kunna jämföra våra resultat med en cellinje som genomgår klassisk apoptos och är mer känslig för strålning. Resultat. I celler där mitotisk katastrof inducerades efter strålning (HeLa Hep2, HCT116 p53-/-) såg vi ett övergående G2 arrest. Eftersom cellerna inte klarade av att underhålla detta arrest, då de saknar p53, fortsatte de in i nästa fas av cellcykeln, mitos. Detta ledde till att DNA skador kvarstod och en ökad frekvens av anafasbryggor. Dessutom skedde en centrosomamplifiering i dessa celler vilket gav upphov till multipolära mitotiska spindlar och en efterföljande icke fungerande cytokines. Detta gav i sin tur celler med multipla kärnor eller mikrokärnor. En ökad frekvens av tetraploida och polyploidaEn förändrad expression av gener som kunde kopplas till flera av dessa för mitotisk katastrof specifika karaktäristika observerades också. Flera gener associerade med reglering av centrosomen och dess amplifiering, med kontrollen av cellens progression från G2 till M-fasen av cellcykeln, samt involverade i kontrollen av en rätt utförd mitos (SAC) hade en ändrad genexpression som korrelerade väl i tid med de ovan nämda fenotyperna. Caspaser som är viktiga för apoptos visade sig vara aktiva i HeLa Hep2, vilket indikerar att mitotisk katastrof kan leda till fördröjd apoptos. Men en del celler lyckas smita undan från apoptosinduktionen och fortsätter i en ny runda i cellcykeln, och detta kunde ses som en växande population viabla celler med ökad mängd DNA (tetraploida celler).HCT116 p53 +/+ celler som har funktionellt p53 kunde inducera både G1 and G2 arrest och genexpressionen visade att många gener som styr övergången till mitos var nedreglerade och förhindrade detta (till skillnad från HeLa Hep2 och HCT116 p53 -/-, där dessa nivåer var högre). Dessa arrester övergick till senescence 3 dagar efter strålning och många gener kopplade till senescence visade ett ökat uttryck. Vi såg ingen markant ökning av centrosomer eller polyploida celler vilket skiljde sig från HeLa Hep2 och HCT116 p53 -/-. Detta tyder på att senescence skiljer sig markant åt från mitotisk katastrof och att p53 är viktig för induktionen av denna form av celldöd.viiVi såg att MOLT-4, precis som HCT116 p53 +/+, inducerar både G1 and G2 arrest. Denna arrest resulterade dock i ökad expression av gener viktiga för cellcykelarrest och apoptosinduktion, och vi såg även en ökad aktivitet av caspaser. Morfologiska studier visade att strålade MOLT-4 celler ofta var små och hade kondenserat DNA, vilket är typiska kännetecken för apoptos. Strålning av MOLT-4 celler ledde till aktivering av klassisk apoptos, och tidsförloppet var mycket snabbare jämfört med de övriga cellinjerna. Slutsats. RIT är en framgångsrik metod för att behandla hematologiska maligniteter, men solida tumörer svarar fortfarande dåligt på denna form av behandling. Denna avhandling visar på komplexiteten bakom strålningsinducerad celldöd och att det är viktigt att identifiera de reglerande mekanismerna för att kunna förbättra RIT av solida tumörer. Vi visar även på vikten av p53 vad gäller tumörens respons av strålbehandling. Genom att identifiera viktiga proteiner för mitotisk katastrof, senescence, och apoptos, kan man utveckla inhibitorer mot dessa och använda de i kobination med RT och RIT för att förbättra behandlingseffekten.

Plant development is complex and highly regulated. Tens of thousands of genes have been sequenced for the model plant <em>Arabidopsis thaliana</em>, yet few have been functionally annotated and characterized. This thesis describes the expression analysis and characterization of four genes in <em>Arabidopsis</em>. Three of these belong to the eukaryotic translation initiation factor 5A (eIF5A) gene family, and the fourth encodes diacylglycerol acyltransferase 1 (DGAT1). Putative roles for these genes in the development of <em>Arabidopsis thaliana</em> are described. <br /><br /> eIF5A is the only known protein to contain the amino acid hypusine. It has been demonstrated previously that eIF5A acts as a shuttle protein, moving specific mRNAs from the nucleus to the cytoplasm for translation. In <em>Arabidopsis thaliana</em> (At), there are three isoforms of eIF5A, and it is clear from the present study that they each have a unique temporal and spatial expression pattern. AteIF5A-1 and -2 are up-regulated during natural senescence and wounding/pathogenesis, respectively, and it is proposed that they regulate the onset of programmed cell death during these events. AteIF5A-3 is up-regulated in elongating meristem of the root, and it is proposed that this isoform is involved in cell growth. <br /><br /> Over-expression of the individual <em>AteIF5A</em> isoforms <em>in planta</em> resulted in pleiotropic phenotypes. When <em>AteIF5A-1</em> or <em>AteIF5A-2</em> was over-expressed, the phenotypes observed were indicative of their putative roles in the translation of proteins required for programmed cell death. When <em>AteIF5A-3</em> was over-expressed, the phenotypes were indicative of a role for this protein in the regulation of cell and tissue elongation. <br /><br /> Lipid analysis of rosette leaves from <em>Arabidopsis thaliana</em> revealed an accumulation of triacylglycerol with advancing leaf senescence coincident with an increase in the abundance and size of plastoglobuli. The terminal step in the biosynthesis of triacylglycerol in <em>Arabidopsis</em> is catalyzed by DGAT1. When gel blots of RNA isolated from rosette leaves at various stages of development were probed with the <em>Arabidopsis</em> EST clone, E6B2T7, which has been annotated as DGAT1, a steep increase in DGAT1 transcript levels was evident in the senescing leaves coincident with the accumulation of triacylglycerol. The increase in DGAT1 transcript correlated temporally with enhanced levels of DGAT1 protein detected immunologically. Two lines of evidence indicated that the triacylglycerol of senescing leaves is synthesized in chloroplasts and sequesters fatty acids released from the catabolism of thylakoid galactolipids. First, triacylglycerol isolated from senescing leaves proved to be enriched in hexadecatrienoic acid (16:3) and linolenic acid (18:3), which are normally present in thylakoid galactolipids. Second, DGAT1 protein in senescing leaves was found to be associated with chloroplast membranes. These findings collectively indicate that DGAT1 plays a role in senescence by sequestering fatty acids de-esterified from galactolipids into triacylglycerol.

Ethephon treatment caused SPCP3 gene expression (Chen et al., 2006), reduction of chlorophyll content, decrease of Fv/Fm value, increase of H2O2 amount, and more cell death, and accelerated leaf senescence in detached sweet potato leave. Exogenous application of modulators such as reduced glutathione, EGTA or cycloheximide delay leaf senescence and cell death caused by ethephon. These data suggest that oxidative stress, calcium influx and de novo synthesized protein may influence ethephon-mediated leaf senescence and cell death. When ethephon induced leaf senescence and cell death, granulin-containing cysteine protease SPCP3 gene was induced. Transgenic Arabidopsis system was used to explore the possible physiological role and function of SPCP3. The results showed that ectopic expression of SPCP3 in transgenic Arabidopsis plants caused earlier flowering, less rosette leaves when flowering, higher yellowing silique percentage during harvest, and lower germination percentage than that in control. During drought treatment, transgenic plants also exhibited reduction of Fv/Fm value and relative water content, but an increase in H2O2 content and cell death. These data suggest that ecopic expression of SPCP3 caused altered developmental characteristics and drought stress sensitivity. Previous report suggests that granulin-like domain may play a role in regulating enzymatic activity of granulin-containing cysteine protease (Yamada et al., 2001). In this report we demonstrate that pre-removal of granulin-like domain of SPCP3 does not affect significantly drought stress sensitivity compared to full-length SPCP3 in transgenic Arabidopsis plants. Based on these data we conclude that oxidative stress, calcium influx, and de novo synthesized proteins may be involved in ethylene signaling leading to leaf senescence and SPCP3 gene expression in detached sweet potato leaves, and ectopic SPCP3 expression in transgenic Arabidopsis plants caused altered developmental characteristics and enhanced drought sensitivity. Granulin-like domain may have no significant influence on SPCP3-mediated effect on drought stress sensitivity.

A major sweet potato leaf-type catalase was detected and identified from fullyexpandedmature leaves using in-gel activity staining assay with native- andSDS-PAGEs. The putative catalase activity band was inhibited by a catalaseinhibitor 3-amino-1,2,4-triazole. The major leaf-type catalase activity wasoptimal over 8, and was significantly repressed by £]-mercaptoethanol. However,its activity was much less affected by temperature within the range of 5 to 450C.Temporal and spatial expression showed that it was specifically detected inleaves, but not in roots and stems. Its activity increased from the immature L2leaves, and reached the maximal at the fully-expanded mature L3 leaves, thenslightly decreased in partial yellowing senescent L4 leaves, and was almost notdetected in completely yellowing L5 leaves similar to folding unopenedimmature L1 leaves. The catalase level showed approximately inversecorrelation with the H2O2 amounts in leaves of different developmental stages.Dark and ethephon, an ethylene-releasing compound, also temporarily enhancedthe catalase activities from 6 h to 24 h, however, the enhanced activitydecreased from 24 h to 48 h in detached leaves after treatment. The catalaselevel also showed approximately negative correlation with the H2O2 amounts intreated leaves. The major leaf-type catalase activity was repressed by EGTA,and the repression can be reversed by exogenous CaCl2. The major leaf-typecatalase activity was also repressed by calmodulin inhibitor chlorpromazine,and the repression can be reversed by exogenous purified SPCAM calmodulinfusion protein. Chlorpromazine-treated leaves also elevated H2O2 amount.Based on these data we conclude that a major leaf-type catalase with maximalactivity in L3 leaf was identified in sweet potato. Its activity was temporarilyenhanced by dark and ethephon, and was modulated by external calcium ion(Ca2+) and calmodulin. A possible physiological role and function in associationwith cellular H2O2 homeostasis in cope with developmental and environmentalcues in sweet potato leaves is suggested.

According to our previous results, ethephon-induced sweet potato leaf senescence and senescence-associated gene SPCP1 expression was affected by reduced glutathione, EGTA, and cycloheximide (Chen et al., 2009). These data suggest that calcium influx, reactive oxygen species (ROS) and de novo synthesized proteins can affect ethephon-mediated effects. Therefore, PCR-selective substractive hybridization and RACE-PCR methods were used to clone 5 full-length cDNAs encoded putative calmodulin (SPCAM), catalase (SPCATA), anionic peroxidase (SPPA), ACC oxidase (SPACO), and DSS1-like protein (SPDSS1) from mixed samples of ethephon-treated leaves for 6 and 24 hours. The ORF of SPCAM contains 450 nucleotides and encodes 149 amino acids. There are 4 putative EF-motifs in the deduced protein structure. SPCAM exhibited amino acid sequence identity with isolated Arabidopsis calmodulins from 48% to 100%, and was completely the same as CaM7 calmodulin. The ORF of SPCATA contains 1479 nucleotides and encodes 492 amino acids. SPCAM exhibited high amino acid sequence identity with other plant catalases from 71.2% to 80.9%, and had the highest identity with mangrove catalase. The ORF of SPPA contains 1068 nucleotides and encodes 355 amino acids. SPPA exhibited amino acid sequence identity with other published sweet potato peroxidase isoforms from 28.7% to 97.5%, and had the highest identity with anionic peroxidase SWPA4. The ORF of SPACO contains 930 nucleotides and encodes 309 amino acids. SPACO exhibited high amino acid sequence identity with other plant ACC oxidases from 62.3% to 81.5%, and had the highest identity with tobacco ACC oxidase. The ORF of SPDSS1 contains 228 nucleotides and encodes 75 amino acids. SPDSS1 exhibited amino acid sequence identity with other DSS1 from 25.2% to 62.3%, and had the highest identity with maize DSS1. The chlorophyll contents and Fv/Fm values were significantly reduced, however, the isolated gene expression was remarkably enhanced in natural senescent leaves. DAB staining showed that H2O2 amount was remarkably elevated at S3 senescent leaves compared to leaves of the other developmental stages. Evan blue staining also demonstrated that S3 senescent leaf had more cell death compared to S0 young leaves. In addition ethephon-induced leaf senescence exhibited similar results. The chlorophyll contents and Fv/Fm values were significantly reduced, however, the isolated gene expression was remarkably enhanced in ethephon-treated leaves compared to dark control. DAB staining showed that H2O2 amount was remarkably elevated at 72 hours in ethephon-treated leaves compared to dark control. Evan blue staining also demonstrated that ethephon-treated leaf for 72 hours had more cell death compared to dark control. Based on these data we conclude that SPCAM, SPCATA, SPPA, SPACO and SPDSS1 gene expression were significantly increased in natural and ethephon-induced senescent leaves. The possible functions of these isolated genes in association with events in ethephon-induced leaf senescence, including calcium influx, ROS elevation or scavenge, and following signaling will be discussed.

During every cell cycle and upon exogenous stress, tumor suppression programs are engaged to ensure genomic stability. In response to replicative aging and oncogenic stimuli, the p53 and Rb pathways are activated to prevent the proliferation of damaged cells. Several lines of evidence suggest that escape from senescence is a crucial early step in oncogenic progression. A major challenge in the cancer field is to combine genomic information regarding cancer-associated genetic changes with high-throughput functional studies, in order to confirm genetic requirements and pinpoint biological roles of these perturbed genes in oncogenesis. Furthermore, a complete genetic understanding of replicative senescence, and how it might be bypassed, is lacking. We describe here two genome scale loss-of-function genetic screens that interrogate these tumor suppressor programs. We utilized a unique sensitization approach to isolate senescence pathways and unmask compensatory mechanisms that may have been difficult to identify in previous studies. These genetic screens have generated comprehensive and validated datasets of putative senescence and p53 pathway genes. We present this dataset as a high-quality resource for further investigation into these biological pathways. We have uncovered several genes in distinct biological pathways which have not been demonstrated to have a functional role in senescence, and which may be putative tumor suppressors. We have identified BRD7 and BAF180, two SWI/SNF components, as critical regulators of p53. BRD7 and BAF180 are required for p53 activity and p21 expression during replicative and oncogene-induced senescence, and evidence suggests that they are inactivated in human cancer. In addition, we have uncovered a role for the deubiquitinating enzyme USP28 in the regulation of p53 accumulation during senescence, such that loss of USP28 results in bypass of the senescence program. We have also investigated several other novel senescence genes including SEMA6A, SEMA3b, and TMEM154. We have found that the expression of these genes is highly regulated during senescence by distinct means, including both p53-dependent and p53-independent mechanisms. These results demonstrate the efficacy of our sensitized screening approach, and also highlight the emerging view that the senescence program requires the combined action of multiple biological pathways for its execution.

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