Doctor of Philosophy / Department of Agronomy / Scott A. Staggenborg / Grain sorghum yield has notably increased from the beginning of hybrid production and commercialization in the late 1950s. The yield increases were the result of improved agronomic practices and hybrid advancement. The objectives of my research were: (1) to determine the magnitude of yield change in the hybrid era in irrigated and rain fed sorghum production, (2) to determine the contribution of agronomic and hybrid changes for yield in the hybrid era, (3) to investigate changes in sorghum morphology, physiology, and water use that contributed to yield increases, (4) to investigate changes that accompanied yield increase with hybrid improvement, and (5) to understand sorghum water and nutrient use and variations between hybrids in these regards. Fifty-two years of grain sorghum hybrid performance trial data (1957-2008), were analyzed and greenhouse and field studies were conducted on five selected hybrids to meet our objectives. The greenhouse and field studies were conducted from the summer of 2007 to the fall of 2009 on five selected hybrids, each representing a decade from the past fifty years. Results indicated that there was an increase in hybrid yield of nearly 50 kg ha-1 yr-1 in dryland sites over the 52 yrs (1957-2008) analyzed. Irrigated grain sorghum yields, however, remained unchanged over the same period. Agronomic practices such as planting date, phosphorus fertilizer use, and planting density changed over these years but were not found to contribute to increased dryland sorghum yields. There was no difference found between old and new hybrids tolerance to different densities. Hybrid advancement and increased nitrogen fertilizer application were responsible for changes in dryland yields. Total water use changed with hybrid advancement. New hybrids used the greatest total water and also had greater root-to-total biomass ratio than the old hybrids. Leaf biomass was also greater for the newest hybrid. There was a difference in amount of total nutrients extracted by hybrids, and there were differences among hybrids in allocation of nutrients to different tissues. In general the yield focus of sorghum hybrid development was effective in dryland sorghum production, likely because of intentional or inadvertent selection of hybrids with better drought tolerance. Results indicated that breeding programs created hybrids with improved morphological characteristics that might have resulted in better resource use (water and nutrient) and ultimately increased yield.

Master of Science / Department of Agronomy / Michel D. Ransom / Many soils in southeastern Kansas are characterized by high clay contents and high shrink-swell potentials. Their vertic properties and claypan characteristics cause soil management to be difficult and pose problems for agricultural, environmental, and engineering uses. Thus, collecting more information and improving our understanding of these soils is an important step towards bettering our soil management techniques. The objectives of this study were to examine the morphology, processes of soil genesis, clay mineralogy, micromorphology, and potassium fixation potential of the soils of interest and how these characteristics varied between and within individual pedons. Ten pedons expected to represent varying degrees of vertic expression were selected. Methods included the use of field descriptions, routine soil laboratory characterization, micromorphological investigations, the determination of clay mineralogy by X-ray diffraction, and the measurement of potassium fixation potential. Field morphology reflected the geologic parent materials available in the region. The fine sediments that compose these clayey soils are primarily provided by the Pennsylvanian and Permian shales and limestones underlying this region and the Flint Hills to the west. Dominant pedogenic processes currently at work are clay illuviation and shrink-swell processes. Silty, non-expansive surface soils at all but sites 6 and 7 are thought to buffer the rapid wetting and drying cycles needed for maximum vertic expression. Four of the soils were dominated by smectitic minerals in the clay fraction while the rest exhibited a more mixed mineralogy. Disruption of illuvial clay features by shrink-swell movement was evident in thin section. Striated b-fabrics dominated the micromorphology except in non-expansive surface soils. K fixation of the soil surface was found to be negative in all soils, thus K fixation potential is considered very low. In subsurface horizons, K fixation generally increased with increasing vermiculite content. In addition to limited quantities of K-fixing clay minerals, naturally high K levels limited the amount of K fixation in this study. The information presented can be used to improve our understanding and management of high clay, vertic and claypan soils in southeastern Kansas.

Thesis (PhD (Soil Science))--Univ ersity of Stellenbosch, 2008. / The (semi-)arid Namaqualand region on the west coast of South Africa is wellknown for its spring flower displays. Due to the aridity of the region, soils research has lagged behind that of the more agriculturally productive parts of South Africa. However, rehabilitation efforts after the hundred or so years of mining, coupled with the increasing ecology and biodiversity research, have prompted a recent interest in Namaqualand soils as a substrate for plant growth. The area is also notable for the abundance of heuweltjies. Much of the previous heuweltjie-work focussed on biogenic aspects such as their spacing, origin and age, but although heuweltjies are in fact a soil feature, there have been few published studies on the soil forming processes within heuweltjies. However, the depositional history of the sediments on the Namaqualand coastal plain is well constrained, which is in stark contrast to the paucity of data on their subsequent pedogenesis. Given that the regolith has been subaerially exposed in some parts for much of the Neogene, the soil formation forms an important part of the sediments’ history. The primary aim of this thesis, therefore, was to examine the soil features of the Namaqualand coastal plain to further the understanding of pedogenesis in the region. The regolith of the northern Namaqualand coastal plain, often ten or more metres deep, comprises successive late Tertiary marine packages, each deposited during sea-level regression. The surface soil horizons formed from an aeolian parent material. The relatively low CaCO3 in the aeolian sands dictated the pedogenic pathway in these deposits. The non-calcareous pathway lead to clay-rich, redder apedal horizons that show a stronger structure with depth, and generally rest directly on marine sands via a subtle discontinuity that suggests pedogenesis continues into the underlying marine facies. The calcareous pathway lead to similar clay-rich, redder apedal B horizons, but which differ in that they are calcareous, and rest on a calcrete horizon often via a stoneline of rounded pebbles. Deeper in the profile, there is generally a regular alteration of sedimentary units, with the upper shoreface facies showing reddening, and the lower shoreface sands remaining pale. This seems to be a function of the grain size, since the upper shoreface materials are coarser, and the redder parts of the lower shoreface are also associated with slightly coarser sands. In some strata the oxidation of glauconite-rich sediments resulted in an orange colour. In an area with abundant heuweltjies, a strongly-cemented calcretized nest was present about 2 m deep within a silica cemented, locally calcareous dorbank profile. Vertical termite burrows are present up to 12 m deep, and appear to have been conduits for preferential vertical flow. Soil formation and termite activity is at least as old as the Last Interglacial. E horizons may have formed in a wetter Last Interglacial paleoclimate, but they are still active in the present day. The Namaqualand coastal plain, with its extensive areas of calcrete development, is almost a textbook setting for calcrete development by inorganic processes. However, these calcretes also show microscale biogenic features. These include M rods, MA rods, and fungal filaments. Abiotic alpha-fabric seems dominant in mature calcrete horizons, and beta-fabric in calcareous nodules in a calcic B horizon above calcrete. The apparent absence of Mg-calcite and dolomite, and abundance of sepiolite in the calcretes of coastal Namaqualand suggests that these Mg-rich clay minerals are the main Mg-bearing phase. Deformation (pseudo-anticlines) in the calcrete appear to result primarily from the displacive effect of calcite crystallization. Although evidence of shrink/swell behaviour is present in the form of accommodating planes, it does not appear to be as volumetrically significant as displacive calcite. Indurated light-coloured horizons that resembled calcrete but are non- to mildly calcareous, break with a conchoidal fracture, resist slaking in both acid and alkali, turn methyl-orange purple, and show a bulk-soil sepiolite XRD peak are similar to palygorskite-cemented material (‘palycrete’) from Spain and Portugal, and so were tentatively named ‘sepiocrete’. Sepiolite and palygorskite are often reported from arid region soils but there has been no recorded cementation of soils by sepiolite. The degree of induration in some of these horizons suggest that amorphous silica could play a role in cementation, and so this thesis compares the two silica-cemented horizons encountered in Namaqualand (silcrete and dorbank (petroduric)) to these ‘sepiocrete’ horizons. Both silica and sepiolite are present in the matrix, although the degree to which silica and sepiolite dominate seems to vary even within same horizon. It seems most probable that both contribute to the structural properties of the horizon. Sepiolitic horizons do not form a diagnostic horizon in the World Reference Base, Soil Taxonomy, or the South African system. To fit the existing soil classification schemes, the terms ‘sepiolitic’ and ‘petrosepiolitic’ (in the same sense as ‘calcic’ and ‘petrocalcic’) would be appropriate. The term ‘sepiolitic’ should be used for horizons which: contain sepiolite in amounts great enough for it to be detected by XRD in the bulk soil, peds (a fractured surface and not just the cutan) cling strongly to the wetted tongue, and methyl orange turns from orange to purple-pink over most of a fragmented surface. The term can be easily be applied as a adjective to other hardpans where sepiolite is significant but not necessarily cementing, such as ‘sepiolitic’ petrocalcic/petroduric. If the horizon is in addition to the above criteria cemented to such a degree that it will slake neither in acid (so cannot be classified as petrocalcic) nor in alkali (and so cannot be classified as petroduric) then the term ‘petrosepiolitic’ would be appropriate. The ‘sepiolitic’ criteria distinguish the ‘petrosepiolitic’ horizon from a ‘silcrete’, a silica-cemented horizon which does not fit the definition of petroduric. Sepiolite is more prominent than palygorskite in the XRD traces. The <0.08 μm fraction is the only size fraction where palygorskite could be detected before acetate treatment. It is unlikely that these fibrous clay minerals are inherited from either the marine or aeolian parent materials, they appear to be pedogenic in origin. Sepiolite and palygorskite are associated with the presence of calcite in the soil profile. Trends in MgO, Al2O3 and SiO2 show that the soil clay fractions lie on a mixing line between sepiolite and mica end-members, with a contribution from smectite, and is consistent with the XRD and TEM results. There is a good correlation between Fe2O3 and TiO2, which can be attributed to the ubiquitously presence of mica. There was no TEM evidence of fibrous mineral degradation to sheet silicates, nor for the evolution of mica laterally to a fibrous mineral. SEM analyses show that much of the sepiolite/palygorskite occurs as fringed sheets, but higher magnification often revealed these sheets to be composed of fibres. These are found coating (rather than evolving from) mica/illite particles, as free-standing mats, and are common on the grain-side of cutans. Some of these textures suggest illuviation of the fibrous clay minerals, but another explanation may be that sites such as that immediately adjacent to silicate grains have the highest concentration of silica for their formation. There was no conclusive evidence for or against the presence of kerolite in the clay fraction, although it does not appear to be a dominant phase in the <2 μm fraction. The hypothesis was that the permeable upper horizons in Namaqualand soils constitute a shallow ephemeral aquifer, which can be considered the pedogenic analogue of the saline lake environments in which sepiolite typically forms. The chemical evolution of the soil solution and clay mineral genesis could therefore be considered in the same terms as the geochemical evolution of closed-basin brines. The Namaqualand coastal plain, like other maritime areas, shows a trend of decreasing pH, increasing Ca and increasing Mg with increasing evaporation. This can be explained by their seawater-influenced initial ratios, and is consistent with the ‘chemical divides’ of the Hardie-Eugster model of brine evolution. Halite remains undersaturated at all concentrations in the saturated paste extracts. At higher concentrations, gypsum reaches saturation, and sulfate is removed from solution. H4SiO4 activity remains unchanged for all levels of evaporation and pH. Calcite remains close to saturation, and is only dependent on the HCO−3 activity and pH for the range of Cl− activity encountered. Most of the soils for which there is a positive sepiolite identification show a positive sepiolite saturation index. The sepiolite saturation index is independent of Mg2+ and H4SiO4 and only increases with increasing pH. Evidence of the pH control on sepiolite saturation is that sepiolite is commonly associated with calcareous horizons. Sepiolite precipitation is therefore more likely to be triggered when a solution encounters a pH barrier than by the concentration of ions by evaporation. The effect of a pH change on the sepiolite saturation index is much greater than that of the effect on calcite. The marine-influenced high Mg coupled with the Hardie- Eugster model of brine evolution offers an explanation for sepiolite-dominance at the coast, and palygorskite-dominance inland. Coastal areas, unlike continental areas, have Mg>HCO−3 initially, which results in an increasing Mg trend with evaporation during the precipitation of sepiolite according to the Hardie-Eugster scheme. The result is that after sepiolite precipitation is initiated by a geochemical pH-barrier, Mg levels will rise causing the increasing (Mg+Si)/Al ratio to continue to favour sepiolite precipitation. This suggests that once sepiolite has begun to precipitate, the subsequent salinity with its accompanying Mg increase makes substantial palygorskite formation unlikely to follow. The hardpan horizons in heuweltjies commonly grade from a ‘sepiolitic’ petrocalcic in the centre through ‘sepiolitic’/‘petrosepiolitic’ to the petroduric horizon on the edges. Noteworthy sepiolite-related pedofeatures in the calcrete include ‘ooids’ with successive sepiolite (hydrophilic and therefore a precipitational substrate) and micrite/acicular calcite layers in the coatings; and limpid yellow nodules with pseudo-negative uniaxial interference figures. They superficially resemble the spherulites in the fresh termite frass. Their fibrous nature and low birefringence, together with the low Ca, high Mg, Si composition, and molar Mg/Si ratios consistent with sepiolite. The pedogenesis of the hardpans in the heuweltjie is proposed to be as follows: enrichment of cations such as Ca and Mg in the heuweltjie centre caused by termite foraging results in calcite and clay authigenesis in the centre of the heuweltjie, leaving the precipitation of pure silica to occur on the periphery. The decaying organic matter concentrated in the centre of the mound by the termites is sufficient to supply the components for calcite precipitation in the centre of the heuweltjie. Following calcite precipitation, the pH is suitable for sepiolite precipitation. The movement of the Mg-Si enriched water downslope, coupled with the decrease in HCO−3 and increase in Mg2+ due to sepiolite precipitation, allows for the precipitation of the ‘sepiolitic’ zone on the outer side of the calcrete, and extend beyond the calcrete in some heuweltjies. The Namaqualand coastal plain is well positioned for further work on its regolith, particularly because of the mining excavations which provide excellent exposures of well-defined layers of the regolith down to bedrock. Soil formation and termite activity is at least as old as the Last Interglacial, and so more detailed work would further the understanding of the subaerial alteration history in southern Africa, as well as providing better-constrained information on the Namaqualand soils that can be used by land-use management and biosphere studies.

Soil erosion is a major issue that threatens to undermine our current system of agriculture. Due to the fact that this system is in turn the number one cause of erosion, agricultural practices in the United States need to be rethought. This study explores how traditional ideas of erosion risks are related to observed erosion on organic strawberry farms along California’s Central Coast. In addition, diversified farming systems are addressed as a possible solution for the current unsustainability of our farming practices. The data from this research suggest that diversity of crops on farms could be linked to less soil erosion. These results are promising for the future of diversification as a new framework for agriculture.

Cable ampacity analysis is generally performed assuming constant worst-state environmental conditions, which often correspond to a dry soil condition or to a condition with uniform ambient soil moisture content. The characteristic time scale of thermal variation in the soil is large, on the order of several weeks, and is similar to the time scale between rainfall events in many geographic locations. Intermittent rainfall events introduce significant transient fluctuations that influence the thermal conditions and moisture content around a buried cable both by increasing thermal conductivity of the soil and by increasing the moisture exposure of the cable insulation. This paper reports on a computational study of the effect of rainfall events on the thermal and moisture transients surrounding a buried cable. The computations were performed with a finite-difference method using an overset grid approach, with an inner polar grid surrounding the cable and an outer Cartesian grid. The thermal and moisture transients observed in computations with periodic rainfall events were compared to control computations with a steady uniform rainfall. Under periodic rainfall conditions, the temperature and moisture fields are observed to approach a limit-cycle condition in which the cable surface temperature and moisture content oscillate in time, but with mean values that are significantly different than the steady-state values.

Anthropogenic activities surrounding horticulture, agriculture and recreation have increased dispersal of invasive earthworms. The introduction of earthworms initiates many physical and chemical alterations in forest soils previously unoccupied by earthworms. Three trials were performed to assess the effects of earthworms on soil-water dynamics, C and N and defensive/storage compound production by a native plant. The first trial was a greenhouse experiment, performed to assess the impact of two ecologically contrasting invasive earthworm species on percolate and evaporative soil water loss. Mesocosms were constructed to simulate a typical forest Entisol commonly penetrated by the species of interest, Lumbricus terrestris and Amynthas agrestis. Earthworms were added in pair and combination to replicate an average population density observed in Vermont. Percolate water was collected and evaporative water loss balance was recorded over a period of 140 days. C and N were quantified in A-horizon bulk and aggregate soil as well as the subsoil. Residual surface leaf litter was also quantified. Results indicated significantly increased evaporative water loss where either worm was present. Conversely, percolate water loss was significantly reduced in presence L. terrestris alone. C and N analysis revealed that only L. terrestris had a significant effect on aggregate soil C. While the abundance of many herbaceous species is reduced at invasive earthworm sites, Arisaema triphyllum anecdotally have greater densities where earthworms are present. It has been hypothesized that the greater density is caused by a trait that allows this plant to store Ca, often observed at increased concentrations in earthworm invaded soils as Ca-oxalate Here, we tested the hypothesis that oxalate increases in A. triphyllum when earthworms are present. As such, we conducted a two-way factorial greenhouse trial to test whether the changes to soil properties made by two invasive earthworm species (Amynthas agrestis and Lumbricus rubellus) or their physical presence (and bioturbation) had an effect on the plant production of oxalate. Upon quantification of variable soluble oxalate in corms after senescence, we found that earthworm presence increased water soluble and total oxalate significantly as well as marginally significantly in the case of HCl soluble oxalate. No significant changes in oxalate concentrations were observed under soil treatments alone. Carbon and nitrogen are found extensively in both terrestrial and atmospheric cycles. A shift in the equilibrium of these elements can suggest a strong interaction between an introduced variable (invasive earthworms in this case) and the abiotic environment. To better understand changes in soil properties with earthworm invasion, a 112-day mesocosm study was undertaken to examine C and N dynamics. Two epi-endogeic invasive earthworm species Lumbricus rubellus and Amynthas agrestis were selected for study. Greenhouse gas production by total mesocosm and soil were monitored. Gas flux measurements on 11 dates indicate both worm species increase CO2 and N2O emitted from mesocosm system as well as soil. Mesocosm total C and N (mass balance) indicate significantly more N but no change in C where earthworms are present. This indicates a disruption of denitrification by earthworm invasion that results in increased N2O emissions. This research is the first to examine these variables in concert and confirms holistic view is essential when examining natural systems.

Doctor of Philosophy / Department of Biology / Michael A. Herman / Determining the genetic mechanisms involved in organismal response to environmental change is essential for understanding the effects of anthropogenic disturbance. The composition of the bacterial-feeding nematode community is an excellent biological indicator of disturbance, particularly in grassland ecosystems. We have previously shown that grassland soil nematodes are responsive to perturbations in the field including the addition of nitrogen fertilizer. We are interested in how this perturbation affects the microbial community and downstream effects on the next trophic level, the bacterial-feeding nematodes. To determine the effects of disturbance on soil bacterial communities we used massively parallel sequencing and found that chronic nitrogen addition on tallgrass prairie significantly impacts overall bacterial community diversity and the abundance of specific bacterial taxa. Because native soil nematodes lack well developed genomic tools, we employed Caenorhabditis elegans as a model for native soil nematode taxa and used transcriptional profiling to identify 204 candidate genes regulated in response to altered bacterial diets isolated from grassland soils. To biologically validate our results we used mutations that inactivate 21 of the identified genes and showed that most contribute to fitness or lifespan in a given bacterial environment. Although these bacteria may not be natural C. elegans food sources, this study aimed to show how changes in food source, as can occur in environmental disturbance, has large effects on gene expression and those genes whose expression are affected, contribute to fitness. Furthermore, we identified new functions for genes of unknown function as well as previously well-characterized genes, demonstrating the utility of this approach to further describe C. elegans genome. We also investigated the function of previously well-characterized C. elegans defense pathways in our grassland soil bacterial environments and found that some are environment specific. Additionally, we found that cuticular collagen genes are important for lifespan, and appear to function downstream of known defense pathways. Overall, our results suggest that anthropogenic disturbance in grasslands alters the most basal components of the soil food web, bacteria and bacterial-feeding nematodes through the genes they possess and how they are expressed, and resultant bottom-up effects could have profound consequences on ecosystem health and function.

Master of Science / Department of Agronomy / Dorivar A. Ruiz Diaz Suarez / Soybeans have expanded into Western Kansas during the last 50 years, increasing in area by 14,500%. There are several limitations that come with trying to grow soybeans in this region, including fertility constraints, moisture stress, and improper use of fertilizers. However, the largest constraint at this time seems to be the presence of micronutrient deficiencies, specifically iron. This thesis has an introduction, and three major chapters.The objective of the first study on agronomics was the evaluation of the effect of Fe fertilizer application using foliar and seed-applied methods in combination with variety selection for Fe deficiency management of soybean grown under irrigated conditions in Western Kansas. The second study uses multivariate analysis as an exploratory tool useful in determining simultaneous observation and analysis of more than one variable in a multidimensional space. Factor analysis is used to find underlying factors that one variable alone cannot measure. The objective of this study was to determine the underlying factors and the multi-linear models that are associated with soil parameters that can create Fe chlorosis in the Great Plains. The third study looked at different application rates of seed-applied Fe fertilizer to try and determine the optimum application rate for application of chelated Fe in Western Kansas.

This study was undertaken for the purpose of determining the relation existing between the native forest cover and the chemical and physical properties of the soils of the Mammoth Cave National Park area. The study was suggested by certain references in the literature to a correlation existing between forest cover and the geological, chemical and physical nature of soils of this area. The recent attempt at reforestation in the Mammoth Cave National Park area renders such a study timely, and it is believed that the results reported in this paper will materially aid the Mammoth Cave National Park Commission and other interested agencies to more judiciously plan for reforestation in this area. Much additional study of this subject is needed, however, before final conclusion can be drawn.

Orientador: Enéas Rente Ferreira / Banca: Darlene Aparecida Oliveira Ferreira / Banca: Marcos Antônio de Castro Marques Teixeira / Banca: Alexandre Carvalho de Andrade / Banca: Silvio Carlos Bray / Resumo: As características da sociedade se refletem diretamente no arranjo espacial da cidade, na forma como as pessoas habitam, trabalham e se deslocam em seu cotidiano. Na cidade moderna, produto da economia de mercado, é comum a tentativa de aglutinação da população segundo estratos econômicos, com as pessoas buscando a proximidade com seus assemelhados. Nesse contexto, atuam diferentes agentes sociais, cada um centrado principalmente em estratégias e práticas espaciais de valorização espacial, expandindo-se em todo o território, inclusive em Áreas de Preservação Permanente - APP. Em consonância com os objetivos propostos, buscou-se, inicialmente, na literatura, o aporte teórico para a temática a ser desenvolvida, bem como os procedimentos a serem adotados no tratamento dos dados estatísticos quantitativos apresentados em forma de mapas temáticos. Conceituaremos termos que julgamos necessários, os seus respectivos, entendimentos na analise dessa pesquisa. Nas considerações finais, apontamos uma análise teórica metodológica pertinente a um novo redirecionamento urbano, baseado em uma Geografia Critica de construção espacial para uma qualidade de vida em Teresina, onde prevaleça a construção e reconstrução do espaço e sua continua análise / Abstract: Society's characteristics are reflected directly in the spatial arrangement of the city, in the way people live, work and travel in their daily lives. In the modern city, a product of the market economy, it is common to attempt to agglutination of the population according to economic strata, with people seeking proximity to their counterparts. Where different actors, each centered mainly on spatial strategies and practices of spatial enhancement, however, expanding throughout the country, including in Permanent Preservation Areas - APP. In line with the goals we sought initially in the literature, the theoretical basis for the theme to be developed, and the procedures to be adopted in the treatment of quantitative statistical data presented in the form of thematic maps. We conceptualize terms which we believe are necessary, their respective, understandings in the analysis of this research. In the final considerations, we point out a methodological theoretical analysis relevant to a new urban redirection based on a Critical Geography spatial construction for a quality of life in Teresina. Where prevails the construction and reconstruction of space and continues its analysis / Doutor