<p>Crystallographic and spectroscopic studies have been performed of structures, coordination and chemical bonding for series of trivalent metal ions solvated by two oxygen-coordinating solvents, water and dimethyl sulfoxide (DMSO). The hydrated scandium(III) and lanthanoid(III) ions, La to Lu, are surrounded by tricapped trigonal prisms of aqua ligands in the isomorphous series of trifluoromethanesulfonates, [M(H₂O)_n](CF₃SO₃)₃. For the smallest ions, M = Er, Tm, Yb, Lu, Sc, the hydration numbers decrease, <i>n</i> = 8.96(5), 8.8(1), 8.7(1), 8.5(1), 8.0(1), respectively, with decreasing size of the ion. The crystal structures at ambient temperature indicate randomly distributed vacancies of the capping oxygen atoms, and ²H solid-state NMR of the diamagnetic [M(H₂O)_n](CF₃SO₃)₃, M = Sc, Lu, Y and La compounds revealed increasing mobility of the water ligands in the coordination sphere with increasing temperature, also for the fully nonahydrated La^III and Y^III ions. The stretching force constants of the Ln-O bonds, evaluated from vibrational spectroscopy, increased from 0.81 to 1.16 N cm^-1 for the Ln-6O trigonal prism in a smooth correlation with the bond distances from La to Lu. For the capping Ln-3O bonds the increase from 0.49 to 0.65 N cm^-1 reflects the increased ligand-ligand repulsion with decreasing ion size. This is also the reason for the water deficiency of the Er, Tm, Yb, Lu and Sc salts, and for [Sc(H₂O)_8.0](CF₃SO₃)₃ the repulsion induced a phase transition at about 185 K that, by low temperature crystallography, was found to distort the coordination of water molecules toward a monocapped trigonal prism around the scandium(III) ion.</p><p>All crystal structures of the octakis(dimethyl sulfoxide)lanthanoid(III) iodides comprise discrete [Ln(dmso)₈]³⁺ complexes surrounded by iodide ions. The lanthanum(III) and praseodymium(III) compounds crystallize in the orthorhombic space group <i>Pbca</i> with more efficient packing than for the heavier and smaller ions in the lanthanoid series, which crystallize in the monoclinic space group <i>P2</i>₁/<i>n</i>. The group 13 metal ions, aluminium(III), gallium(III), indium(III), thallium(III), and also scandium(III) of group 3, form crystalline hexakis(dimethyl sulfoxide) solvates in the space group <i>R</i> 3, with octahedral MO₆ coordination entities, which are increasingly compressed along one threefold axis for increasing ionic size. EXAFS measurements on the solvated ions display similar M-O bond distances in dimethyl sulfoxide solution as in the solid solvates. For all the solid dimethyl sulfoxide solvates the strength and nature of the metal-oxygen bond has been evaluated by normal coordinate analysis of vibrational spectra, and correlated with the S-O stretching vibrational mode.</p><p>Distortions from regular octahedral six coordination are discussed for the hydrated isoelectronic soft mercury(II) and thallium(III) ions in the solid bisaquamercury(II) and trisaquatallium(III) trifluoromethanesulfonates, in terms of pseudo Jahn-Teller effects (PJTE). Mercury(II), generally more strongly influenced by PJTE distortions, displays a 2 + 4 Hg-O coordination forming chains that are held together in sheets by hydrogen bonds and in layers by van der Waals interactions, which explain the fragile structure of the crystals.</p>

Crystallographic and spectroscopic studies have been performed of structures, coordination and chemical bonding for series of trivalent metal ions solvated by two oxygen-coordinating solvents, water and dimethyl sulfoxide (DMSO). The hydrated scandium(III) and lanthanoid(III) ions, La to Lu, are surrounded by tricapped trigonal prisms of aqua ligands in the isomorphous series of trifluoromethanesulfonates, [M(H2O)n](CF3SO3)3. For the smallest ions, M = Er, Tm, Yb, Lu, Sc, the hydration numbers decrease, n = 8.96(5), 8.8(1), 8.7(1), 8.5(1), 8.0(1), respectively, with decreasing size of the ion. The crystal structures at ambient temperature indicate randomly distributed vacancies of the capping oxygen atoms, and 2H solid-state NMR of the diamagnetic [M(H2O)n](CF3SO3)3, M = Sc, Lu, Y and La compounds revealed increasing mobility of the water ligands in the coordination sphere with increasing temperature, also for the fully nonahydrated LaIII and YIII ions. The stretching force constants of the Ln-O bonds, evaluated from vibrational spectroscopy, increased from 0.81 to 1.16 N cm-1 for the Ln-6O trigonal prism in a smooth correlation with the bond distances from La to Lu. For the capping Ln-3O bonds the increase from 0.49 to 0.65 N cm-1 reflects the increased ligand-ligand repulsion with decreasing ion size. This is also the reason for the water deficiency of the Er, Tm, Yb, Lu and Sc salts, and for [Sc(H2O)8.0](CF3SO3)3 the repulsion induced a phase transition at about 185 K that, by low temperature crystallography, was found to distort the coordination of water molecules toward a monocapped trigonal prism around the scandium(III) ion. All crystal structures of the octakis(dimethyl sulfoxide)lanthanoid(III) iodides comprise discrete [Ln(dmso)8]3+ complexes surrounded by iodide ions. The lanthanum(III) and praseodymium(III) compounds crystallize in the orthorhombic space group Pbca with more efficient packing than for the heavier and smaller ions in the lanthanoid series, which crystallize in the monoclinic space group P21/n. The group 13 metal ions, aluminium(III), gallium(III), indium(III), thallium(III), and also scandium(III) of group 3, form crystalline hexakis(dimethyl sulfoxide) solvates in the space group R 3, with octahedral MO6 coordination entities, which are increasingly compressed along one threefold axis for increasing ionic size. EXAFS measurements on the solvated ions display similar M-O bond distances in dimethyl sulfoxide solution as in the solid solvates. For all the solid dimethyl sulfoxide solvates the strength and nature of the metal-oxygen bond has been evaluated by normal coordinate analysis of vibrational spectra, and correlated with the S-O stretching vibrational mode. Distortions from regular octahedral six coordination are discussed for the hydrated isoelectronic soft mercury(II) and thallium(III) ions in the solid bisaquamercury(II) and trisaquatallium(III) trifluoromethanesulfonates, in terms of pseudo Jahn-Teller effects (PJTE). Mercury(II), generally more strongly influenced by PJTE distortions, displays a 2 + 4 Hg-O coordination forming chains that are held together in sheets by hydrogen bonds and in layers by van der Waals interactions, which explain the fragile structure of the crystals.

The electronic and geometrical structure of free neutral clusters and liquids have been studied using synchrotron-radiation based photoelectron and Auger electron spectroscopy in combination with lineshape modeling. A novel experimental setup has been developed for studies of liquids, based on the liquid microjet technique. Theoretical lineshapes have been computed using both classical (molecular dynamics) and quantum mechanical (mainly density functional theory) methods. Clusters are finite ensembles of atoms or molecules, ranging in size from a few to several thousand atoms. Apart from being fundamentally interesting, clusters are also promising as building blocks for nano-technology. In this thesis results are presented for rare-gas and molecular clusters, ranging from weakly van-deer-Waals bonded to hydrogen bonded. It is shown that the combination of core-level photoelectron spectroscopy (XPS) and lineshape modeling can be used to estimate the sizes of clusters. A model for treating the effect of inter-molecular nuclear relaxation upon ionization is proposed. The structure of single-component molecular clusters are investigated by molecular dynamics simulations, validated against XPS data. Finally, the radial structure of a two-component molecular cluster is investigated by XPS. Liquids have been studied for centuries, but still many questions remain regarding the microscopic properties. With the recent development of the liquid microjet technique, new insight into the atomic structure can be obtained. In this thesis we study aqueous solutions using photoelectron and Auger electron spectroscopy (AES). We investigate the structure of surface active molecules by XPS, study the Auger decay after core-level ionization in aqueous potassium chloride (KCl), and follow the changes in molecular structure of glycine as a function of pH.

Knowledge about the insertion and stabilization of membrane proteins is a key step towards understanding their function and enabling membrane protein design. Transmembrane helices are normally quite hydrophobic to insert efficiently, but there are many exceptions with unfavorable polar or titratable residues. Since evolutionary conserved these amino acids are likely of paramount functional importance, e.g. the four arginines in the S4 voltage sensor helix of voltage-gated ion channels. This has lead to vivid discussion about their conformation, protonation state and cost of insertion. To address such questions, the main focus of this thesis has been membrane protein solvation in lipid bilayers, evaluated using molecular dynamics simulations methods. A main result is that polar and charged amino acids tend to deform the bilayer by pulling water/head-groups into the hydrophobic core to keep their hydrogen bonds paired, thus demonstrating the adaptiveness of the membrane to allow specific and quite complex solvation. In addition, this retained hydration suggests that the solvation cost is mainly due to entropy, not enthalpy loss. To further quantify solvation properties, free energy profiles were calculated for all amino acids in pure bilayers, with shapes correlating well with experimental in vivo values but with higher magnitudes. Additional profiles were calculated for different protonation states of the titratable amino acids, varying lipid composition and with transmembrane helices present in the bilayer. While the two first both influence solvation properties, the latter seems to be a critical aspect. When the protein fraction in the models resemble biological membranes, the solvation cost drops significantly - even to values compatible with experiment. In conclusion, by using simulation based methods I have been able to provide atomic scale explanations to experimental results, and in particular present a hypothesis for how the solvation of charged groups occurs.

In this thesis methodological developments have been made for the description of flexible conjugated dyes in room temperature spectrum calculations. The methods in question target increased accuracy and efficiency by combining classical molecular dynamics (MD) simulations with time-dependent response theory spectrum calculations. For absorption and fluorescence spectroscopies a form of conformational averaging is used, where the final spectrum is obtained as an average of spectra calculated for geometries extracted from ground and excited state MD simulations. For infrared and Raman spectroscopies averaged spectra are calculated based on individual spectra, obtained for zero-temperature optimized molecular structures, weighted by conformational statistics from MD trajectories. Statistics for structural properties are also used in both cases to gain additional information about the systems, allowing more efficient utilization of computational resources. As it is essential that the molecular mechanics description of the system is highly accurate for methods of this nature to be effective, high quality force field parameters have been derived, describing the molecules of interest in either the MM3 or CHARMM force fields. These methods have been employed in the study of three systems. The first is a platinum(II) actylide chromophore used in optical power limiting materials, for which a ultraviolet/visible absorption spectrum has been calculated. The second is a family of molecular probes called luminescent conjugated oligothiophenes, used to detect and characterize amyloid proteins, for which both absorption and fluorescence spectra have been calculated. Finally, infrared and Raman spectra have been calculated for a group of branched oligothiophenes used in organic solar cells. In addition, solvation effects have been studied for conjugated poly\-eletrolytes in water, resulting in the development of two solvation models suitable for this class of molecules. The first uses a quantum meachanics/molecular mechanics (QM/MM) description, in which the solute mole\-cule is described using accurate quantum mechanical methods while the surrounding water molecules are described using point charges and polarizable point dipoles. The second discards the water entirely and removes the ionic groups of the solute. The QM/MM model provides highly accurate results while the cut-down model gives results of slightly lower quality but at a much reduced computational cost. Finally, a study of protein-dye interactions has been performed, with the goal of explaining changes in the luminescence properties of the LCO chromophores when in the presence of amyloid proteins. Results were less than conclusive.

Face au problème des micropolluants émergents trouvés dans l’eau, l’utilisation de carbones activés est un moyen de réduire cette pollution à la source. Le but de ce travail est de mieux comprendre les mécanismes d’adsorption de certains micropolluants sur des tissus et feutres de carbones activés.Neuf molécules ont été étudiées dont des médicaments : la carbamazépine (CBZ), le diclofénac (DFN), l’ibuprofène (IBP) et l’ofloxacine (OFX), un produit anticorrosion : le benzotriazole (BZT), un perturbateur endocrinien : le bisphénol-A (BPA), deux herbicides : le mécoprop (MCP) et le pentachlorophénol (PCP) et une molécule utilisée comme indicateur de pollution des eaux usées : la caféine (CAF). Les adsorbants ultramicroporeux (tissu KIP1200 et feutre CSV4) et l’adsorbant mésoporeux (tissu BBV 800) (fournis par Dacarb, France) ont été caractérisés par adsorption d'azote à 77K et de CO2 à 273K, titrages acido-basiques (méthode de Boehm), mesure du pHpzc (point isoélectrique). Les cinétiques et isothermes d'adsorption ont été étudiées à 25°C à pH=7,5 dans un tampon phosphate NaHPO4/KH2PO4 (à 0,04M). La concentration résiduelle est analysée par HPLC.Les cinétiques d'adsorption ont été étudiées pour les 9 molécules à différentes concentrations initiales. Le temps pour atteindre l’équilibre d’adsorption dépend du volume des molécules ainsi que de leur affinité avec l’adsorbant. La quantité maximale adsorbable dépend du volume microporeux ainsi que de la surface spécifique de l’adsorbant, la quantité adsorbable est donc plus importante sur le tissu KIP 1200 que sur le feutre CSV 4. La vitesse de diffusion est la plus lente pour les adsorbants possédant un volume microporeux important, le tissu mésoporeux BBV 800 permet donc une adsorption rapide grâce à de plus larges pores qui permettent un accès plus rapide à la porosité.Des analyses en mélanges binaires et multi composés ont alors été réalisées pour connaître les paramètres clés gouvernant les cinétiques d’adsorption. Une compétition existe entre molécules dans certains cas (BZT et MCP par exemple) avec une première phase gouvernée par la cinétique d’adsorption liée à la diffusion dans les pores et la deuxième phase gouvernée par des phénomènes thermodynamiques entre le système soluté/solvant/carbone.Les isothermes d'adsorption ont été réalisés à 3 températures différentes et modélisées par des équations de Langmuir-Freundlich pour tous les micropolluants. Des paramètres thermodynamiques (enthalpie d’adsorption et enthalpie libre) ont alors été calculés et corrélés aux propriétés physico-chimiques des molécules. Une corrélation est mise en évidence entre l’enthalpie libre et la polarisabilité des molécules ainsi que les forces de Van der Waals déterminées avec le logiciel COSMO-RS mettant en évidence l’importance des forces non polaires dans le phénomène d’adsorption. Des mesures par calorimétrie d’adsorption à très faibles quantités adsorbées ont permis de mettre en évidence que l’entropie est le paramètre thermodynamique qui contrôle l’adsorption de molécules (BZT, PCP, CAF et OFX) sur le tissu KIP 1200. De fortes énergies d’interaction ont été mis en évidence entre les molécules (BZT, CAF et OFX) et les sites d’adsorption.Une étude d’adsorption-désorption de N2 et de CO2 sur des tissus KIP 1200 chargés en PCP, BZT, CAF et OFX a permis de mieux localiser le lieu de l’adsorption dans la porosité montrant une adsorption prioritairement dans les ultramicropores puis dans les supermicropores. Il a été montré également par cette méthode et par des mesures thermiques que l’eau est fortement adsorbée dans la porosité. / A lot of studies have revealed that some organic molecules such as pharmaceutical molecules, solvents, pesticides, etc.. are frequently found in water, at concentrations below µg/L, even after treatment at the exhaust of wastewater treatment plants. These molecules are highly toxic when accumulated in environment. One of the possibility for removing these micropollutants is the adsorption on activated carbons. Thus the aim of this work is to better understand the adsorption mechanism of some micropollutants onto activated carbon (ACs) in felt or fabric form.Nine micropollutants were studied, such as some pharmaceuticals: Carbamazepine (CBZ), Diclofenac (DFN), Ibuprofen (IBP), and Ofloxacin (OFX); one anti-corrosion compound : Benzotriazol (BZT); two herbicides : Mecoprop (MCP) and Pentachlorophenol (PCP) and an endocrine disruptor : Bisphenol A (BPA). Adsorption of Caffeine (CAF) which is an anthropic indicator of pollution in waste water, was also studied. The ACs (microporous KIP1200 fabric and CSV4 felt and mesoporous BBV 800 fabric, from Dacarb, France) were characterized by N2 adsorption-desorption at 77 K and CO2 adsorption at 273 K, pHpzc (point of zero charge) measurements and acido-basic titrations (Boehm method). The adsorption kinetics and isotherms were studied at pH 7.4 at 25°C in NaHPO4/KH2PO4 buffered solutions (about 0.04 M) using UV spectrometry and HPLC for the analysis of organic molecules in the remaining solution.Kinetics have been studied for 9 molecules at different initial concentrations. Time to reach adsorption equilibrium depends of the volume of the molecule and its affinity with the activated carbon. The maximum adsorbed quantity depends of the microporous volume and the specific area of the adsorbent, the adsorbed quantity is then bigger for KIP 1200 fabric than for CSV 4 felt. The speed of diffusion is slower for the adsorbent with high microporous volume, the mesoporous BBV 800 fabric gives place to a quick adsorption kinetics thanks to its large pores that gives an easy access to porosity.Binary and multi components kinetics have been done in order to understand key processes that drive kinetics adsorption. Competition between molecules have been shown (for BZT and MCP for example). Adsorption kinetics can be divided into two phases: the first one is driven by pore diffusion and the second one by thermodynamic phenomenon between the solute, the solvent and the AC.The adsorption isotherms of the molecules were studied at 13, 25 and 40°C; and the thermodynamic parameters (isoteric enthalpies and entropies Gibbs free energies) were determined. A correlation between Gibbs free energy and polarizability of molecules as well as Van der Waals energy calculated with Cosmotherm software shows the importance of non polar forces on adsorption phenomenon. Adsorption calorimetry experiments showed that entropy is the thermodynamic parameter that drives adsorption of molecules (BZT, PCP, CAF and OFX) onto KIP 1200 fabric.The pore size distributions of the carbons loaded with micropollutants were determined by DFT simulation from CO2 and N2 adsorption isotherms, to investigate the porosity accessible to the adsorbate. The accessible pore are firstly the ultramicropores and then supermicropores. With this technique and thermal experiments, it has been shown that water is highly bonded inside the porosity.

Made available in DSpace on 2018-06-27T18:56:22Z (GMT). No. of bitstreams: 3 Igor Wanderley Reis Dias.pdf: 6016779 bytes, checksum: 86bcdcfbfacb63d4d4a518ace6997161 (MD5) Igor Wanderley Reis Dias.pdf.txt: 208576 bytes, checksum: cd35138cd2ea03d785b3e9c7e488c5c9 (MD5) Igor Wanderley Reis Dias.pdf.jpg: 3431 bytes, checksum: 2d647e86ee0171ea4dfc34ba86f497fd (MD5) Previous issue date: 2011-08-10 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / One of the widely used biodegradable polymers to control drug release in specific sites of action is the poly-&#949;-caprolactone (PCL). Considering exploring a potential application of this drug in the polymer, we studied its structural properties, electronic and energy the PCL interacting with the drugs indomethacin (IndOH) and its ethyl ester (IndEt), tazarotene (TZR) and chlorhexidine (CLX). The first stage of the study was performed by first-principles calculations based on density functional theory (DFT). After conformational analysis of the PCL, the interaction with the drugs was made using the conformation up-down-curved polymer, and it has been demonstrated in interactions with drugs IndOH, IndEt and TZR in both the concave portion of the polymer chain (PCL-IN) and the convex part (PCL-OUT) is that these interactions are essentially physical, and the value of energy connection occurs when high hydrogen bonds in the system, keeping also in a physical regimen when you re adding more polymer chains. As for interactions with CLX settings with a polymer chain (PCL-IN) show higher binding energies when compared to other systems, and interactions on the convex (PCL-OUT) there is a decrease in the binding energies in comparison with the PCL-IN settings, but in configurations with two polymer chains the binding energies are still high. With these results demonstrate that the systems obtained with IndOH, IndEt and are promising to TZR entrainment, and the CLX system tends not to be suitable for this purpose. In the second stage of this work was to study the structure and dynamics of solvation for configurations with four polymers with IndOH and IndEt. Through the radial distribution function (RDF) can observe the hydrophobic character of PCL and the folding of polymer chains in aqueous solution, with a little organization of water molecules and with greater organization of the polymer around the drug. And through the diffusion coefficient showed that the IndOH diffuses faster into the middle of the IndEt. These results show which configurations are more stable for the carrying of drugs and demonstrate agreement with the experimental results, showing the accuracy of the methodologies used. / Um dos polímeros biodegradável bastante utilizado para o controle da liberação de fármacos em sítios de ação específicos é a poli-&#949;-caprolactona (PCL). Considerando explorar uma potencial aplicação desse polímero na área farmacológica, estudou-se as propriedades estruturais, energéticas e eletrônicas da PCL interagindo com os fármacos indometacina (IndOH) e seu éster etílico (IndEt), o tazaroteno (TZR) e a clorexidina (CLX). A primeira etapa do estudo foi realizada por meio de cálculos de primeiros princípios baseados na teoria do funcional da densidade (DFT). Após a análise conformacional da PCL, a interação com os fármacos foi feita utilizando a conformação up-down-curvada do polímero, e o que foi demonstrado nas interações com os fárrmacos IndOH, IndEt e TZR, tanto na parte côncava da cadeia polimérica (PCL-IN) quanto na parte convexa (PCL-OUT) é que essas interações são essencialmente físicas, tendo o valor da energia de ligação elevado quando ocorre ligações de hidrogênio no sistema, mantendo-se também em um regime físico quando se tem a inclusão de mais cadeias poliméricas. Já para as interações com CLX as configurações com uma cadeia polimérica (PCL-IN) mostram energias de ligação elevadas, quando comparada aos outros sistemas, e para as interações na parte convexa (PCL-OUT) há uma diminuição nas energias de ligação em comparação com as configurações PCL-IN, porém nas configurações com duas cadeias poliméricas as energias de ligação ainda continuam elevadas. Com esses resultados demonstra-se que os sistemas obtidos com IndOH, IndEt e TZR são promissores ao carreamento, e que o sistema com CLX tende a não ser propício para este fim. Na segunda etapa do trabalho houve o estudo da estrutura e dinâmica de solvatação para as configurações com quatro polímeros com a IndOH e o IndEt. Através da função de distribuição radial (RDF) pode-se observar o caráter hidrofóbico da PCL e o enovelamento das cadeias poliméricas em solução aquosa, com uma pouca organização das moléculas de água e com uma maior organização do polímero em torno dos fármacos. E através do coeficiente de difusão demonstrou-se que a IndOH difunde mais rápido para o meio do que o IndEt. Estes resultados mostram quais configurações são mais estáveis para o carreamento de fármacos e demonstram concordância com os resultados experimentais, mostrando a acurácia das metodologias empregadas.

Orientador: Roberto Rittner Neto / Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Quimica / Made available in DSpace on 2018-08-16T12:43:04Z (GMT). No. of bitstreams: 1 Martins_CarinaRabelo_D.pdf: 1755898 bytes, checksum: c7a1d0009ba787233a8957afb35ccedb (MD5) Previous issue date: 2009 / Resumo: Este trabalho apresenta estudos teóricos e experimentais sobre estabilidade conformacional de ésteres metílicos de alguns aminoácidos (glicina, alanina, prolina e ácido aspártico) por meio de espectroscopia vibracional e cálculos teóricos da estrutura eletrônica. Os cálculos teóricos foram efetuados com o método ab initio em nível MP2 e com o da Teoria do Funcional de Densidade (¿DFT¿) com diferentes conjuntos de bases e com correção de energia do ponto zero ¿ZPE¿, disponíveis no pacote Gaussian03. Determinaram-se as energias e geometrias dos confôrmeros mais estáveis na fase vapor e com a inclusão dos efeitos do solvente. Os espectros no infravermelho na região do estiramento fundamental do grupo carbonila e no seu primeiro ¿overtone¿, em solventes de diferentes constantes dielétricas, assim como o comportamento dos acoplamentos JHH e JCH em solução foram utilizados para determinar o número e as populações dos rotâmeros presentes. A análise conjunta dos dados permitiu avaliar quais são os fatores responsáveis pela estabilidade conformacional nos ésteres de aminoácidos estudados. No caso do éster do ácido aspártico realizou-se um estudo detalhado RMN de H e C a fim de verificar se os acoplamentos JHH e JCH, dos grupos CH e CH2 apresentavam variação com a mudança da população dos confôrmeros, uma vez que os hidrogênios do grupo CH2 são diastereotópicos, portanto apresentam deslocamentos químicos diferentes e acoplam entre si. Estes dados foram tratados pelo programa Models juntamente com as geometrias previamente otimizadas, o que forneceu informações detalhadas sobre o comportamento conformacional da molécula em solução e também no vapor / Abstract: The present work reports a theoretical and experimental study on the conformational analysis of some amino acid methyl esters (glycine, alanine, proline and acid aspartic) through IR and NMR spectroscopy, and theoretical calculations. The results from ab initio calculations of energy and structure for the main conformers were performed with the Gaussia03 program using MP2 and DFT theory including ZPE corrections and salvation effects. The infra-red spectrum in solvents with wide range of dielectric constants as well the behavior of couplings constants JHH and JCH in solution were used to determine the number and the populations of the rotamers in solution. The analysis of the data allowed the evaluation of the factors responsible for conformacional stability in the studied compounds. For the acid aspartic ester, a detailed investigation was performed using the through Models program, with the optimized geometries from Gaussian combined with experimental couplings constant values, which yielded detailed information on the conformacional behavior of the molecule in solution and also in the vapor / Doutorado / Quimica Organica / Doutor em Ciências

La théorie de la fonctionnelle de la densité classique est utilisée pour étudier la solvatation de solutés quelconques dans le solvant eau. Une forme approchée de la fonctionnelle d’excès pour l’eau est proposée. Cette fonctionnelle nécessite l’utilisation de fonctions de corrélation du solvant pur. Celles-ci peuvent être calculées par simulations numériques, dynamique moléculaire ou Monte Carlo ou obtenues expérimentalement. La minimisation de cette fonctionnelle donne accès à l’énergie libre de solvatation ainsi qu’à la densité d’équilibre du solvant. Différentes corrections de cette fonctionnelle approchée sont proposées. Une correction permet de renforcer l’ordre tétraédrique du solvant eau autour des solutés chargés, une autre permet de reproduire le comportement hydrophobe à longue distance de solutés apolaires. Pour réaliser la minimisation numérique de la fonctionnelle, la théorie a été implémentée sur une double grille tridimensionnelle pour les coordonnées angulaires et spatiales, dans un code de minimisation fonctionnelle écrit en Fortran moderne, mdft. Ce programme a été utilisé pour étudier la solvatation en milieu aqueux de petits solutés atomiques neutres et chargés et de petites molécules polaires et apolaires ainsi que de solutés plus complexes, une argile hydrophobe et une petite protéine. Dans chacun des cas la théorie de la fonctionnelle de la densité classique permet d’obtenir des résultats similaires à ceux théoriquement exacts obtenus par dynamique moléculaire, avec des temps de calculs inférieurs d’au moins trois ordres de grandeurs. / A classical density functional theory is applied to study solvation of solutes in water. An approx- imate form of the excess functional is proposed for water. This functional requires the knowledge of pure solvent direct correlation functions. Those functions can be computed by using molecular simulations such as molecular dynamic or Monte Carlo. It is also possible to use functions that have been determined experimentally. The functional minimization gives access to the solvation free energy and to the equilibrium solvent density. Some correction to the functional are also proposed to get the proper tetrahedral order of solvent molecules around a charged solute and to reproduce the correct long range hydrophobic behavior of big apolar solutes. To proceed the numerical minimization of the functional, the theory has been discretized on two tridimensional grids, one for the space coordinates, the other for the angular coordinates, in a functional mini- mization code written in modern Fortran, mdft. This program is used to study the solvation in water of small solutes of several kind, atomic and molecular, charged or neutral. More complex solutes, a neutral clay and a small protein have also been studied by functional minimization. In each case the classical density functional theory is able to reproduce the exact results predicted by MD. The computational cost is at least three order of magnitude less than in explicit methods.

No description available.