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White-tailed deer (Odocoileus virginianus) are a highly charismatic game species with considerable ecological and economic impacts across most of their range. In the Central Appalachian Mountains, deer are a keystone species in forested ecosystems. Regionally, populations vary in herd growth or decline. These fluctuations are important in that they often drive many aspects of population management and regulation, which are dependent on herd demographics. Some key population vital rates allowing better understanding of these changes in white-tailed deer herds are survival, cause-specific mortality, home-range variation, both broad and fine-scale resource selection, and ultimately population growth trends in response to changes in both population vital rates and hunter harvest regulations. In this study, I address each of these concepts within a deer population in Bath County, Virginia, that has presumably been in overall decline since the early 1990's. From June-September, 2019-2020, I monitored survival and cause specific mortality of 57 neonate white-tailed deer until 12 weeks of age. Fawn and adult female survival was 0.310 (95% CI = 0.210-0.475) and 0.871 (95%CI=0.790-0.961) respectively. During the study, I observed a total of 37 fawn mortalities and identified the cause of death using field evidence and through analyzing genetics from residual predator salvia recovered on deer carcasses. Mortalities included 28 predation events and 9 deaths from other causes (e.g., abandonment, malnutrition, or disease). Black bears accounted for 48.6% of all mortality and 64.2% of known predations within our study. My top model identified elevation as a significant predictor of fawn survival, with mortality risk increasing 20% for every 100m increase in elevation. My model using observed vital rates predicted an increasing population of λ = 1.10 (interquartile range, IQR 1.06-1.14). The population was predicted to increase by 2% with a 10% increase in doe harvest (λ = 1.02, IQR = 0.97-1.06) but declined by 7% at 20% harvest (λ = 0.93, IQR = 0.89-0.96). I found that fawning home ranges of females that successfully reared fawns to the end of the season had significantly larger home ranges than those that were unsuccessful at higher elevations. Fawning home ranges for females with fawns increased approximately 71ha in size for every 100m increase in mean home range elevation, whereas seasonal home ranges of females without fawns decreased approximately 1.5 ha for every 100m increase in mean home range elevation. Deer selected fawn-rearing areas nearer to forested edges, open habitats, and at higher elevations, while they avoided areas near disturbed and mature forests. Within the fawn rearing area, females selected locations closer to disturbed forest, open habitats, and forested edge, while avoiding mature forest habitats, and higher elevations. Females selected birth sites with higher levels of visual obstruction. Using a step-selection method for real-time resource selection across biological seasons, we found that female deer selected for open areas during the fawning, breeding, early gestational, and late gestational seasons. During the fall breeding season, females avoided forested edge, but selected for areas at higher elevations. During early gestational seasons females selected disturbed habitats and areas at higher elevations while again avoiding forested edge. Overall, my work highlights variations in population dynamics of white-tailed deer in areas of the Central Appalachian Mountains that are primarily characterized by poor habitat quality and provides novel insights into fine-scale spatial ecology of female deer across biological seasons within the region. Ultimately, while the deer population in our study was not predicted to be in decline, this work supports predation risk as being a significant factor associated with habitat quality. / Doctor of Philosophy / White-tailed deer (Odocoileus virginianus) are a game species with extensive ecological and economic impacts across most of their range. In the central Appalachian Mountains, many populations across the region vary in terms of herd size growth, stability, or decline. These fluctuations are important in that they often drive many aspects of population management and regulation, which are dependent on the status of herd demographics. Some key population vital rates that aid us in better understanding these changes in white-tailed deer herds are survival and cause-specific mortality, home-range variation in association with habitat quality and the ability to successfully reproduce, population trends under hypothetical management scenarios, and resource selection of various habitats that are available across the landscape. In this study, I address each of these concepts within a deer population in Bath County, Virginia, which has presumably been in decline since the early 1990's. As expected, fawn survival was lower than previously reported from other study areas of the Central Appalachians Mountains. Predation was the leading cause of fawn mortality, with black bears being responsible for most predation events. Fawn mortality risk was significantly associated with elevation - where fawns at higher elevations were those at greater risk. Surprisingly, the deer population in Bath County was projected to be increasing under current conditions and was also projected to be stable-to-increasing even under some hypothetical scenarios which would negatively impact population growth (i.e., 10% increase in female harvest or 17% reduction in fawn survival). Fawning home ranges of collared females which successfully reared known fawns to the end of the biological season were significantly influenced by elevation; such that females with fawns had home ranges that increased in size with increasing elevation, whereas females without fawns had home ranges which decreased slightly in size with increasing elevation. At birth sites, females selected locations characterized by higher levels of visual obstruction compared to randomly sampled areas. Of the habitat types analyzed, both selection or avoidance of specific habitats varied across both biological season and spatial scale. Ultimately, while I found that some deer populations associated with poor quality habitats in the Central Appalachians may not be in decline, deer were likely influenced greatly by habitat quality – especially pertaining to predation risk – throughout Bath County.

À l’échelle macroscopique, à savoir celle du paysage, la couverture végétale des milieux arides apparaît comme fortement hétérogène. Cette organisation spatiale des peuplements est habituellement attribuée aux processus de facilitation et de compétition qui opèrent à l’échelle microscopique des individus végétaux. Le qualificatif d’auto-organisées fut donc attribué à ces végétations qui se structurent en l’absence d’hétérogénéité préexistante du milieu physique. <p><p>L’auto-organisation de la végétation fut particulièrement bien étudiée dans le cas des structures périodiques connues dès les années '50 sous le nom de brousses tigrées. Depuis les années '90, un pas en avant dans la compréhension de ce phénomène fut accompli grâce au développement de modèles mécanistes de la dynamique de la phytomasse et des ressources, émanant du cadre théorique de l'auto-organisation des structures dissipatives. Ces modèles se rejoignent sur un ensemble de prédictions robustes et vérifiables concernant la formation, le maintien et la modulation par l'environnement des structures macroscopiques. Durant le même laps de temps, notre niveau d’analyse a connu une expansion sans précédent, à la fois dans le temps et dans l’espace, grâce au développement de l’imagerie satellitaire et des outils d’analyse spatiale. Nous nous trouvons dès lors à un moment charnière pour la validation macroscopique des théories d’auto-organisation des végétations en milieu aride.<p><p>Le présent travail s'articule en quatre études, chacune traitant d'une prédiction différente. Nous avons mis en évidence les principales variables responsables de la formation des structures et de leur modulation en termes d’échelle et de géométrie. Enfin avons démontré la mobilité des structures sous l’effet d’une pente de terrain. / Doctorat en Sciences / info:eu-repo/semantics/nonPublished

Forests in the Drakensberg Mountains, although generally small and fragmented, represent a wealth of globally significant biodiversity. This is especially true of the invertebrate fauna, which includes a range of localized endemic species. Ground dwelling, flightless invertebrates living in forests show relative immobility and poor dispersal abilities compared to birds, butterflies and other animal taxa. The naturally fragmented state of Afrotemperate forests also geographically isolates these taxa. No quantified, systematic surveys of flightless invertebrates have been conducted in Afrotemperate forests in the Drakensberg Mountains. This means that, to date, invertebrates have not been considered in the management of these habitats. However, invertebrates are vitally important in ecosystem functioning and maintenance and must be included in management plans. This study quantified flightless invertebrate diversity in Afrotemperate forest patches in the Drakensberg by investigating spatial patterns and seasonal changes in invertebrate diversity. The broad objectives were to: 1) Determine the appropriate spatial scale at which conservation of flightless invertebrates should be implemented; 2) Determine which season, taxa and sampling methods are most suitable for biodiversity assessment and monitoring in Afrotemperate forest; and 3) Investigate methods of prioritizing Afrotemperate forests for conservation of flightless invertebrate diversity. Seventeen forest patches in six valleys in four Drakensberg reserves (Rugged Glen Nature Reserve, Royal Natal National Park, Cathedral Peak and Injisuthi) were sampled in the summer of 2004/2005. In addition, three forests at Injisuthi were sampled in March, June, September and December 2004 to enable seasonal comparisons. Sampling methods included soil samples, leaf litter samples, pitfall traps, active search quadrats and tree beats. The study focused on terrestrial molluscs (Class Gastropoda), earthworms (Class Annelida), onychophorans (Class Onychophora), centipedes (Class Chilopoda), millipedes (Class Diplopoda) and ants (Class Insecta). Target taxa were sorted to morphospecies and then identified to species by taxonomic experts. Seventy-two species and a total of 5261 individual specimens from the six target taxa were collected. Species composition of sites varied along the north-south gradient, and species turnover (beta diversity) was related to the distance between sites. Flightless invertebrate species richness and community structure fluctuated seasonally. Therefore, I recommend that sampling should take place during the wet season (summer months). Molluscs were the most suitable taxon among those surveyed to represent flightless invertebrate diversity and leaf litter samples and active search quadrats are the most suitable sampling methods for flightless invertebrates in forest. This study compared approaches to prioritizing Afrotemperate forests in terms of their invertebrate diversity using ranked species richness with complementarity indices of species presence/absence, taxonomic distinctness (orders, families and genera) and endemicity. There was no consistent spatial trend in the priority ranking of forests based on species richness. Complementarity based on species richness only required eight out of 17 forests to represent all 62 species. Although complementarity based on taxonomic distinctness and endemicity required fewer sites, not all species were represented. The minimum set of sites identified using complementarity based on species richness and augmented with information on taxa of conservation importance (local endemic and threatened species) was the most rigorous approach to prioritizing Afrotemperate forest patches in the Drakensberg for flightless invertebrate conservation. Urgent conservation interventions are required because invertebrates play a critical role in ecosystem functioning. As many forest patches and invertebrate populations as possible should be protected to conserve the full complement of invertebrate species of the region. Special management attention should be paid to the eight forests identified as priority sites in the complementarity analyses. Forest patches cannot survive in isolation, so it is important to manage the grassland, riverine vegetation, forest ecotone and forests holistically. Provisional targets were set for the conservation of flightless invertebrates, based on estimates of the requirements for persistence of invertebrates in Afrotemperate forest, made within the constraints of available information and expert opinion. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2006.

Balancing increasing elephant numbers with biodiversity conservation in small reserves has become a concern for many protected area managers. Elephants are considered important agents of disturbance creating heterogeneity and thus contributing to the maintenance of biodiversity. However elephants also damage vegetation through their destructive feeding habits, and this has led to pressure to reduce elephant populations in many reserves. Quantitative data on the impact of elephants on invertebrates, the main component of biodiversity at the species level, are lacking. The aim of this project was to assess the effect that habitat alteration by elephants has on the diversity of selected ground-dwelling invertebrates (ants, centipedes, millipedes, spiders, scorpions and termites) through the provision of logs and dung as a potential refuge niche for these invertebrate communities, and to determine the effect of spatial (vegetation types) and temporal (season and age of dung) variation on the invertebrates using these refugia. Variation in impacts was considered important because savanna is not homogenous and the impact of the refugia is likely to be dynamic in terms of seasonal trends in invertebrate populations, and in terms of changes in the environmental conditions offered by the refugia. Elephant impact on vegetation, quantity of refugia (logs and dung) produced and invertebrate diversity associated with refugia were determined for 115 transects within Madikwe Game Reserve in the North Western Province, South Africa. Invertebrate abundance, species richness and diversity were always higher under refugia than in areas without refugia. Vegetation utilisation, frequency of refugia production and invertebrate diversity showed strong temporal variation (seasonal); elephant impact and production of logs were higher in winter than in summer because elephants are more likely to feed on woody vegetation in winter when grass nutrient levels are low. Invertebrate diversity under the logs was higher in summer than in winter, and this probably reflected the higher abundance and diversity of invertebrates that are usually associated with the warmer, wetter summer months. The effect of adding refugia to three vegetation types on invertebrate diversity was tested experimentally at Makalali Private Game Reserve in the Limpopo Province, South Africa. Logs and elephant dung were set out in five plots each measuring 20m x 20m within Govender - iii mixed bushveld, riverine and mopane woodland. Significant differences were observed in invertebrate abundance, species richness and diversity between the refugia and control plots that lacked refugia and between the three vegetation types sampled. Similarity between invertebrate communities utilising the different refugia types and between the three different vegetation types were tested using the Jaccard similarity coefficient. The three vegetation types shared fewer than 50% of their species, as did the logs, dung and control sites. However the results obtained do illustrate a higher degree of similarity between the refugia substrates (logs and dung) than the control sites and between the more heterogeneous vegetation types (mixed bushveld and riverine) than the mopane veld. This indicated that invertebrate communities associated with refugia were not uniform, but were influenced by vegetation type. An experimental test of temporal changes in invertebrate community composition illustrated the importance of elephant dung as a microhabitat for different invertebrate groups over different ages of dung (three days, two, four, 12 and 32 weeks old). Colonisation of the dung, by dung beetles was immediate but as the microclimate of the dung changed with time, the new conditions were ideal for other invertebrate taxa. Over a period of eight months, the change of invertebrate communities utilising the dung included dung beetles, followed by millipedes and [mally ant and termite communities. The results of this study illustrated the importance of refugia (logs and dung) produced by elephants for ground-dwelling invertebrate species in the savanna environment. The extent of the influence of the refugia varied both spatially and temporally and this should be considered in future monitoring or in measuring impacts. While further research on a broader range of organisms and at larger scales is necessary, elephants do have a positive impact on at least some components of biodiversity, through the process of facilitation of refugia. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2005.

Le déplacement animal joue un rôle déterminant dans la structuration spatiale et la dynamique des populations biologiques, en particulier des espèces fortement mobiles. L’espace et l’environnement font ainsi partie intégrante du cycle de vie des tortues marines. Ce travail de thèse propose de caractériser l’écologie spatiale des tortues marines, du stade juvénile au stade adulte, dans le Sud-ouest de l’océan Indien, principalement par l’usage de deux méthodes : la télémétrie satellitaire et la modélisation individu-centrée. Il montre en premier lieu que la phénologie de la reproduction de la tortue verte à travers la région est principalement liée à la température de surface de la mer au voisinage des sites de reproduction. Sont ensuite étudiés les patrons de dérive des nouveau-nés générés par les courants océaniques qui impacteraient inégalement leurs traits d’histoire de vie selon l’emplacement du site de naissance. Concernant le stade immature, les résultats suggèrent un cycle de développement trans-équatorial pour la tortue caouanne dans l’océan Indien. Pour le stade adulte, cette étude caractérise les couloirs et la connectivité migratoires de la tortue verte dans la région. Enfin, l’intégration de ces résultats permet de comprendre la structuration des patrons migratoires régionaux et leur influence sur la dynamique des populations. L’ensemble des connaissances acquises fournit un support concret d’aide à la décision pour la mise en place de plans de gestion et de conservation des tortues marines dans le Sud-ouest de l’océan Indien. Cela souligne l’importance d’une approche à grande échelle pour la protection d’un patrimoine biologique partagé par plusieurs nations. / Animal movement is crucial to the ecology of spatially structured population, particularly for highly mobile species. Marine turtles’ life cycle is indeed closely related to spatial and environmental factors. This work analyses the spatial ecology of marine turtles, from early juvenile to adult stages, in the Southwest Indian Ocean, primarily through the use of two methods: satellite tracking and individual-based modeling. Firstly, this analysis argues that green turtle’s reproductive phenology across the region is mainly related to the sea surface temperature in the vicinity of the nesting site. Then, it shows how drifting trajectories of hatchlings in oceanic currents unevenly influence their life history traits depending on the position of the natal site. By tracking late juvenile stage, this work also suggests a trans-equatorial developmental cycle for loggerhead turtle in the Indian Ocean. At adult stage, it describes migratory corridors and connectivity for green turtle across the region. Finally, an integrative approach considering all these results allows for an understanding of the regional migratory patterns and their influence on population dynamics. The results of this work provide a practical policy decision tool for management and conservation of marine turtles in the Southwest Indian Ocean and highlight the need for a large-scale approach in the protection of biological resources and heritage shared by multiple nations.

Water provision is an important tool in the management of savanna ecosystems. Artificial water sources are a potential focus for degradation (biodiversity and loss of ecosystem resilience at a range of spatio-temporal scales), because they alter plant-animal interactions and soil function and stability, through the creation of piospheres. This study was undertaken as part of a drive by the Kruger National Park (KNP) to enable managers to integrate artificial waterhole management (e.g. waterhole closure or rotation) when setting goals for heterogeneity and biodiversity conservation in the park. The over-arching goal was to quantify the relationship between water provision and different attributes of heterogeneity, as part of a broader initiative to place water provision and piospheres within an ecosystem threshold framework. Herbivore utilisation gradients (piospheres) around artificial waterholes in the KNP, described in 1990, were resurveyed in 2006-2007, against a backdrop of waterhole closure in the KNP, to contribute to an understanding of the factors governing recovery and resilience in grazing systems. The responses of the plant community and soil parameters to a relaxation of herbivore utilisation pressure around closed waterholes (recovering piospheres) were examined, as were changes in the same parameters at sites that have remained open (active piospheres). These ecosystem properties were considered in relation to structural and functional ecosystem thresholds, and the piospheres surveyed incorporated a range of rainfall and edaphic gradients in the KNP. Herbaceous basal cover and soil infiltration capacity both increased significantly between 1990 and 2006/7, regardless of waterhole status. This was linked to higher rainfall in 2006/7, compared to 1990. The only vegetation variables to respond consistently to distance from water were the remote-sensed Normalized Difference Vegetation Index (NDVI) and herbaceous species composition. NDVI increased with distance from water, and annual grasses and forbs were most abundant close to water. Perennial, disturbance-sensitive climax species increased in abundance further from water. Soil analyses (N, P, pH, organic matter, and texture) and field measurements (infiltration, compaction) revealed no systematic piosphere patterns. Waterhole closure did not result in soil or vegetation recovery, but piosphere intermittency and the increases of basal cover and infiltration rate indicated that ecosystem resilience has not been compromised vii by long-term artificial water provision in the KNP. This study has shown that the traditional piosphere model is of limited use in sub-humid savanna ecosystems like the KNP during above-average rainfall periods. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2010.

This project predominantly investigated the implications of spatial heterogeneity in the ecological processes of competition and infection. Empirical analysis of spatial heterogeneity was carried out using the lepidopteran species Plodia interpunctella. Using differently viscous food media, it was possible to alter the movement rate of larvae. Soft Foods allow the movement rate of larvae to be high, so that individuals can disperse through the environment and avoid physical encounters with conspecifics. Harder foods lower the movement rate of larvae, restricting the ability of individuals to disperse away from birth sites and avoid conspecifics encounters. Increasing food viscosity and lowering movement rate therefore has the effect of making uniform distributed larval populations more aggregated and patchy. Different spatial structures changed the nature of intraspecific competition, with patchy populations characterised by individuals experiencing lower growth rates and greater mortality because of the reduced food and space available within densely packed aggregations. At the population scale, the increased competition for food individuals experience in aggregations emerges as longer generational cycles and reduced population densities. Aggregating individuals also altered the outcome of interspecific competition between Plodia and Ephestia cautella. In food media that allowed high movement rates, Plodia had a greater survival rate than Ephestia because the larger movement rate of Plodia allowed it to more effectively avoid intraspecific competition. Also the faster growth rate, and so larger size, of Plodia allowed it to dominate interspecific encounters by either predating or interfering with the feeding of Ephestia. In food that restricts movement, the resulting aggregations cause Plodia to experience more intraspecific encounters relative to interspecific, reducing its competitive advantage and levelling the survival of the two species. Spatial structure also affected the dynamics of a Plodia-granulosis virus interaction and the evolution of virus infectivity. Larval aggregation forced transmission to become limited to within host patches, making the overall prevalence of the virus low. However potentially high rates of cannibalism and multiple infections within overcrowded host aggregations caused virus-induced mortality to be high, as indicated by the low host population density when virus is presented. Also aggregated host populations cause the evolution of lower virus infectivity, where less infective virus strains maintain more susceptible hosts within the aggregation and so possess a greater transmission rate. The pattern of variation in resistance of Plodia interpunctella towards its granulosis virus was found using two forms of graphical analysis. There was a bimodal pattern of variation, with most individuals exhibiting either low or high levels of resistance. This pattern was related to a resistance mechanism that is decreasingly costly to host fitness.