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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
31

Polissacarídeo capsular do Streptococcus agalactiae como antígeno vacinal: desenvolvimento de um modelo vacinal para mucosas com Nanopartícula de quitosana / Capsular polysaccharide of Streptococcus agalactiae as vaccine antigen: development of a mucosal vaccine model with chitosan nanoparticle

Sibylle Sophie Hacker 19 December 2018 (has links)
A bactéria gram-positiva Streptococcus agalactiae do grupo B (GBS) faz parte da microbiota normal do trato geniturinário humano, sendo um organismo comensal do corpo da mulher. No entanto, em mulheres grávidas, quando há alterações na composição microbiana do canal vaginal, pode ocorrer a proliferação e a infecção pelo GBS. Este microrganismo, em sua forma patogênica oportunista, pode infectar o neonato durante o parto natural, assim como contribuir para infecções urinárias e uterinas durante a gestação. O GBS já foi identificado como um dos responsáveis pela alta taxa de mortalidade neonatal, sendo um dos principais agentes de infecção em recém-nascidos no mundo. Ele também pode ser a causa de infecções nas gestantes, levando a várias complicações, como corioamnionite, endometrite e infecções do trato urinário e do sítio cirúrgico. Pode haver comprometimento da gestação e do feto, com abortamento, morte fetal intrauterina e ruptura da membrana coriônica, levando a parto prematuro - que pode resultar em outras consequências graves. Este trabalho foi desenvolver um modelo vacinal para mucosa sublingual, utilizando o polissacarídeo capsular do Streptococcus agalactiae como antígeno, encapsulado em Nanopartículas de quitosana. Para o estudo de otimização dos parâmetros de fermentação, para aumentar a produtividade de cápsula polissacarídica (PS) presente na superfície celular, utilizou-se o Banco de Dados Kegg (Kyoto Encyclopedia of Genes and Genomes). A adição do suplemento L-Prolina foi o que propiciou a principio, maior relação entre crescimento bacteriano e formação de cápsula polissacarídica. A purificação e extração da cápsula polissacarídica foi realizada com etapas sucessivas de ultra filtração tangencial e precipitação alcóolica dos contaminantes. As caracterizações físico-químicas: difração de raios-X (DRX), cromatografia gasosa (CGMS), ressonância magnética (NMR) e determinação de açúcares pelo método fenol-sulfúrico, foram realizadas para identificação da composição e estrutura monossacarídica de açucares. O PS isolado apresenta ramificações de fucose, manose, glicose, galactose e N-acetil-glucosamina, apresentando estrutura amorfa. A liofilização do polissacarídeo foi realizada para fins de concentração e conservação. A encapsulação do polissacarídeo acoplada quimicamente com OVA, em uma Nanopartícula de quitosana, teve como finalidade aumentar a mucoadesividade e possibilitar maior absorção do antígeno entre as células da junção epitelial das mucosas sublinguais. A partir da análise de DLS (Espalhamento dinâmico de luz), as Nanopartículas apresentaram dimensões entre 200 a 400 nm e o Potencial Zeta acima de 20. O índice de polidispersão (PDI) está dentro do esperado (abaixo de 0.3). A capacidade de encapsulamento em relação à OVA foi de 92,8% dos grupos que continham PS. O teste IgG sérica total mostrou que o grupo G2 (Nanopartícula com Polissacarídeo e Proteína acoplados) foi o que teve maior reatividade no teste de ELISA, pela Análise de Variância (ANOVA) com ferramenta de Bonferrone. O teste sIgA mostrou que o grupo G2 (Nanopartícula com Polissacarídeo e Proteína acoplados) foi o que teve maior concentração de anticorpo sIgA total. Como resultado e conclusão, o polissacarídeo capsular do Streptococcus agalactiae é um bom candidato a antígeno vacinal. / Gram-positive bacteria Streptococcus agalactiae group B (GBS) is part of the normal microbiota of the human genitourinary tract, being a commensal organism of the female body. However, in pregnant women, when there are changes in the microbial composition of the vaginal canal, GBS proliferation and infection may occur. This microorganism, in its opportunistic pathogenic form, can infect the neonate during natural childbirth, as well as contribute to urinary and uterine infections during pregnancy. The GBS has already been identified as one of the responsible for the high neonatal mortality rate, being one of the main agents of infection in newborns in the world. It can also be the cause of infections in pregnant women, leading to various complications such as chorioamnionitis, endometritis, and urinary tract and surgical site infections. There may be pregnancy and fetal impairment, with abortion, fetal intrauterine death, and rupture of the chorionic membrane, leading to premature labor - which can result in other serious consequences. This work was to develop a vaccine model for sublingual mucosa using the capsular polysaccharide of Streptococcus agalactiae as antigen, encapsulated in chitosan nano particles. For the study of optimization of the fermentation parameters, the Kegg (Kyoto Encyclopedia of Genes and Genomes) database was used to increase the productivity of polysaccharide capsule (PS) present on the cell surface. The addition of the L-Proline supplement gave rise to a higher ratio between bacterial growth and polysaccharide capsule formation. The purification and extraction of the polysaccharide capsule was performed with successive stages of tangential ultrafiltration and alcoholic precipitation of the contaminants. The physicochemical characterization of X-ray diffraction (XRD), gas chromatography (CGMS), magnetic resonance (NMR) and determination of sugars by the phenol-sulfuric method were performed to identify the composition and monosaccharide structure of sugars. The isolated PS presents branches of fucose, mannose, glucose, galactose and N-acetyl-glucosamine, presenting amorphous structure. Lyophilization of the polysaccharide was performed for concentration and conservation purposes. The encapsulation of the polysaccharide coupled chemically with OVA in a chitosan nano particle was aimed at increasing mucoadhesiveness and allowing greater absorption of the antigen between the cells of the sublingual mucosal epithelial junction. From the analysis of DLS (dynamic light scattering), the nanoparticles presented dimensions between 200 to 400 nm and the Zeta potential above 20. The polydispersity index (PDI) is within the expected range (below 0.3). The encapsulation capacity for OVA was 92.8% of the groups containing PS. The total serum IgG test showed that the G2 group (Nano particle with Polysaccharide and Protein coupled) was the one that had the highest reactivity in the ELISA test, by Analysis of Variance (ANOVA) with Bonferrone tool. The sIgA test showed that the G2 group (Nanoparticle with Polysaccharide and Protein coupled) had the highest concentration of total sIgA antibody. As a result and conclusion, the capsular polysaccharide of Streptococcus agalactiae is a good candidate for vaccine antigen.
32

Polissacarídeo capsular do Streptococcus agalactiae como antígeno vacinal: desenvolvimento de um modelo vacinal para mucosas com Nanopartícula de quitosana / Capsular polysaccharide of Streptococcus agalactiae as vaccine antigen: development of a mucosal vaccine model with chitosan nanoparticle

Hacker, Sibylle Sophie 19 December 2018 (has links)
A bactéria gram-positiva Streptococcus agalactiae do grupo B (GBS) faz parte da microbiota normal do trato geniturinário humano, sendo um organismo comensal do corpo da mulher. No entanto, em mulheres grávidas, quando há alterações na composição microbiana do canal vaginal, pode ocorrer a proliferação e a infecção pelo GBS. Este microrganismo, em sua forma patogênica oportunista, pode infectar o neonato durante o parto natural, assim como contribuir para infecções urinárias e uterinas durante a gestação. O GBS já foi identificado como um dos responsáveis pela alta taxa de mortalidade neonatal, sendo um dos principais agentes de infecção em recém-nascidos no mundo. Ele também pode ser a causa de infecções nas gestantes, levando a várias complicações, como corioamnionite, endometrite e infecções do trato urinário e do sítio cirúrgico. Pode haver comprometimento da gestação e do feto, com abortamento, morte fetal intrauterina e ruptura da membrana coriônica, levando a parto prematuro - que pode resultar em outras consequências graves. Este trabalho foi desenvolver um modelo vacinal para mucosa sublingual, utilizando o polissacarídeo capsular do Streptococcus agalactiae como antígeno, encapsulado em Nanopartículas de quitosana. Para o estudo de otimização dos parâmetros de fermentação, para aumentar a produtividade de cápsula polissacarídica (PS) presente na superfície celular, utilizou-se o Banco de Dados Kegg (Kyoto Encyclopedia of Genes and Genomes). A adição do suplemento L-Prolina foi o que propiciou a principio, maior relação entre crescimento bacteriano e formação de cápsula polissacarídica. A purificação e extração da cápsula polissacarídica foi realizada com etapas sucessivas de ultra filtração tangencial e precipitação alcóolica dos contaminantes. As caracterizações físico-químicas: difração de raios-X (DRX), cromatografia gasosa (CGMS), ressonância magnética (NMR) e determinação de açúcares pelo método fenol-sulfúrico, foram realizadas para identificação da composição e estrutura monossacarídica de açucares. O PS isolado apresenta ramificações de fucose, manose, glicose, galactose e N-acetil-glucosamina, apresentando estrutura amorfa. A liofilização do polissacarídeo foi realizada para fins de concentração e conservação. A encapsulação do polissacarídeo acoplada quimicamente com OVA, em uma Nanopartícula de quitosana, teve como finalidade aumentar a mucoadesividade e possibilitar maior absorção do antígeno entre as células da junção epitelial das mucosas sublinguais. A partir da análise de DLS (Espalhamento dinâmico de luz), as Nanopartículas apresentaram dimensões entre 200 a 400 nm e o Potencial Zeta acima de 20. O índice de polidispersão (PDI) está dentro do esperado (abaixo de 0.3). A capacidade de encapsulamento em relação à OVA foi de 92,8% dos grupos que continham PS. O teste IgG sérica total mostrou que o grupo G2 (Nanopartícula com Polissacarídeo e Proteína acoplados) foi o que teve maior reatividade no teste de ELISA, pela Análise de Variância (ANOVA) com ferramenta de Bonferrone. O teste sIgA mostrou que o grupo G2 (Nanopartícula com Polissacarídeo e Proteína acoplados) foi o que teve maior concentração de anticorpo sIgA total. Como resultado e conclusão, o polissacarídeo capsular do Streptococcus agalactiae é um bom candidato a antígeno vacinal. / Gram-positive bacteria Streptococcus agalactiae group B (GBS) is part of the normal microbiota of the human genitourinary tract, being a commensal organism of the female body. However, in pregnant women, when there are changes in the microbial composition of the vaginal canal, GBS proliferation and infection may occur. This microorganism, in its opportunistic pathogenic form, can infect the neonate during natural childbirth, as well as contribute to urinary and uterine infections during pregnancy. The GBS has already been identified as one of the responsible for the high neonatal mortality rate, being one of the main agents of infection in newborns in the world. It can also be the cause of infections in pregnant women, leading to various complications such as chorioamnionitis, endometritis, and urinary tract and surgical site infections. There may be pregnancy and fetal impairment, with abortion, fetal intrauterine death, and rupture of the chorionic membrane, leading to premature labor - which can result in other serious consequences. This work was to develop a vaccine model for sublingual mucosa using the capsular polysaccharide of Streptococcus agalactiae as antigen, encapsulated in chitosan nano particles. For the study of optimization of the fermentation parameters, the Kegg (Kyoto Encyclopedia of Genes and Genomes) database was used to increase the productivity of polysaccharide capsule (PS) present on the cell surface. The addition of the L-Proline supplement gave rise to a higher ratio between bacterial growth and polysaccharide capsule formation. The purification and extraction of the polysaccharide capsule was performed with successive stages of tangential ultrafiltration and alcoholic precipitation of the contaminants. The physicochemical characterization of X-ray diffraction (XRD), gas chromatography (CGMS), magnetic resonance (NMR) and determination of sugars by the phenol-sulfuric method were performed to identify the composition and monosaccharide structure of sugars. The isolated PS presents branches of fucose, mannose, glucose, galactose and N-acetyl-glucosamine, presenting amorphous structure. Lyophilization of the polysaccharide was performed for concentration and conservation purposes. The encapsulation of the polysaccharide coupled chemically with OVA in a chitosan nano particle was aimed at increasing mucoadhesiveness and allowing greater absorption of the antigen between the cells of the sublingual mucosal epithelial junction. From the analysis of DLS (dynamic light scattering), the nanoparticles presented dimensions between 200 to 400 nm and the Zeta potential above 20. The polydispersity index (PDI) is within the expected range (below 0.3). The encapsulation capacity for OVA was 92.8% of the groups containing PS. The total serum IgG test showed that the G2 group (Nano particle with Polysaccharide and Protein coupled) was the one that had the highest reactivity in the ELISA test, by Analysis of Variance (ANOVA) with Bonferrone tool. The sIgA test showed that the G2 group (Nanoparticle with Polysaccharide and Protein coupled) had the highest concentration of total sIgA antibody. As a result and conclusion, the capsular polysaccharide of Streptococcus agalactiae is a good candidate for vaccine antigen.
33

Méningites à streptocoque du groupe B de l'enfant

Bouquinet, Émilie. Cohen, Robert January 2008 (has links) (PDF)
Thèse d'exercice : Médecine. Pédiatrie : Paris 12 : 2007. / Titre provenant de l'écran-titre. 69 f. : ill. Bibliogr. f. 49-57.
34

Efficience du mode de prélèvement vaginal dans le cadre du dépistage systématique du Streptocoque du groupe B étude de 1353 prélèvements /

Bouillevaux, Emilie January 2009 (has links) (PDF)
Mémoire de sage-femme : Médecine : Nancy 1 : 2009. / Titre provenant de l'écran-titre. Bibliogr.
35

Caractérisation du transporteur de zinc Adc/Lmb de Streptococcus agalactiae / Characterization of the ADC/LMB zinc transporter of Streptococcus agalactiae

Moulin, Pauline 20 December 2017 (has links)
Dans cette étude, le transporteur ABC de zinc de Streptococcus agalactiae, première cause d’infections materno-foetale en France, a été caractérisé. Nous avons montré que ce transporteur se compose, du complexe perméase-ATPase AdcCB, associé à trois protéines membranaires Lmb, AdcA et AdcAII redondantes dans la fixation de zinc. Ce transporteur comporte également deux protéines Sht et ShtII, retrouvées au niveau de la paroi, et nécessaires aux protéines Lmb et AdcAII pour la capture de zinc. L’absence d’un transporteur fonctionnel, par la triple délétion des gènes lmb, adcA et adcAII ou du complexe adcCB, a révélé une inhibition de la croissance et une perturbation de la division de la bactérie lorsqu’elle se trouve dans un environnement carencé en zinc. De plus, nous avons montré que ce transporteur de zinc participe à la survie de la bactérie en milieux biologiques humains, comme le liquide amniotique ou le LCR, où la bactérie est retrouvée lors d’infections, suggérant l’importance du transporteur lors du processus infectieux. Ces résultats ont mis en évidence, pour la première fois, que le zinc assure des fonctions biologiques vitales pour S. agalactiae et que, dans des conditions de forte carence en zinc, le transporteur Adc/Lmb représente le principal système d’acquisition de zinc de la bactérie. / In this study, the zinc-ABC transporter of Streptococcus agalactiae, the first cause of materno-foetal infections in France, was characterized. We showed that this transporter is composed of an AdcCB permease-ATPase complex in association with three membrane-associated proteins Lmb, AdcA and AdcAII, which are redundant in zinc-binding. This transporter also possesses two proteins Sht and ShtII, which are associated to the cell wall, and that are necessary for the Lmb and AdcAII proteins for zinc capture. The absence of a functional transporter, by the triple deletion of the lmb, adcA and adcAII genes or the adcCB complex, revealed a growth inhibition and a disruption of the division of the bacterium when it is in a zinc-restricted environment. Furthermore, we showed that the zinc-ABC transporter contributes to the survival of the bacterium in human biological fluids, as the amniotic fluid or the cerebrospinal fluid, where the bacterium is found during infections, suggesting the importance of the transporter during the infectious process. These results hightlighted, for the first time, that zinc has biologically vital functions in S. agalactiae and that, under high zinc deficiency conditions, the Adc/Lmb transporter is the main zinc acquisition system of the bacterium.
36

Caractérisation des ARN régulateurs chez Streptococcus agalactiae / Characterization of regulatory RNAs in Streptococcus agalactiae

Zorgani, Mohamed Amine 07 December 2016 (has links)
Streptococcus agalactiae, appelé aussi Group B Streptococcus (GBS), est une bactérie commensale du tractus digestif et génital de diverses espèces animales dont l’espèce humaine. Elle représente la première cause d’infections néonatales et est aussi un pathogène émergent chez l’adulte immunodéprimé. L’objectif de ma thèse est la caractérisation fonctionnelle et mécanistique des ARNrég. J’ai étudié plus particulièrement l’ARNrég CetR (pour «cell-envelope-targeting RNA»). Il module la résistance au peptide antimicrobiens (PAM) et la virulence à travers la régulation post-transcriptionnelle de l’ARNm dltD codant une protéine de biosynthèse de l'acide D-alanyl-lipotéichoïque. La délétion de cetR induit des changements dans la morphologie cellulaire, une diminution de la formation du biofilm et de la résistance aux PAM. Une zone d’interaction, CetRdltD, de 27 nucléotides a été prédite in silico. Des mutations compensatoires chez GBS montrent que CetR interagit directement avec l’ARNm dltD et que la perturbation de la zone d’appariement est suffisante pour observer les phénotypes associés à CetR. La quantification des niveaux d’ARNm et de la protéine DltD nous a permis de montrer que CetR active la traduction de dltD et que la perturbation du duplex CetR-dltD induit une diminution spectaculaire de la protéine DltD. De plus, en utilisant un modèle murin d’infection et en quantifiant la survie des bactéries dans les macrophages, nous avons montré que CetR et DltD sont cruciaux pour la virulence de GBS. Enfin, une approche protéomique globale nous a permis de montrer que CetR joue un rôle important dans l’expression des protéines dites « moonlighting » et de certains facteurs de virulence potentiels. Cet ARNrég peut jouer un rôle important dans la capacité de S. agalactiae à s'établir dans son biotope et à exprimer ses facteurs de virulence. Enfin, les résultats de ces recherches sont des prérequis au développement de stratégies permettant de réduire le risque des infections néonatales dues à S. agalactiae. / The opportunistic pathogen group B Streptococcus (GBS) is the leading cause of neonatal infections. The aim of this work is the characterization of a 680 nt-long regulatory RNA, CetR (cell-envelope-targeting RNA). It modulates antimicrobial peptides (AMPs) resistance and virulence through posttranscriptional regulation of dltD mRNA which encodes a D-alanyl-lipoteichoic acid biosynthesis protein. Deletion of cetR leads to cell morphology changes, reduced biofilm formation and AMPs resistance. A 27 nt-long CetR-dltD interacting region is predicted in silico. Compensatory base pair exchanges in GBS demonstrate that CetR interacts directly with dltD mRNA and that disruption of this RNA pairing is sufficient to observe the CetR-associated phenotypes. By quantifying both mRNA and protein, we demonstrate that CetR enhances dltD translation and disruption of the CetR/dltD mRNA interaction results in a dramatic decrease in DltD protein. Moreover, using an infection murine model and quantifying bacterial survival in macrophages, we observe that both CetR and DltD are crucial for GBS virulence. Finally, we highlight CetR pleiotropic role in the expression of several moonlighting proteins and potential virulence factors. This regulatory RNA may play an important role in the ability of GBS to settle in its biotope and express its virulence factors.
37

Aderência, invasão e persistência intracelular de estreptococos do grupo B em células epiteliais respiratórias A549 / Adhesion, invasion and intracellular persistence of group B Streptococci in respiratory epithelial cells A549

Camila Serva Pereira 26 February 2010 (has links)
Conselho Nacional de Desenvolvimento Científico e Tecnológico / Estreptococos do grupo B (EGB) comumente colonizam adultos saudáveis, sem sintomas, mas sob certas circunstâncias possui a capacidade de invadir tecidos do hospedeiro, evadir da detecção imunológica e causar doenças invasivas graves. Por conseguinte, os EGB continuam sendo uma das principais causas de mortalidade neonatal, pneumonia, sepse e meningite. Contudo, a patogênese desta infecção ainda está pouco elucidada. O sorotipo V é freqüentemente associado à doença invasiva em mulheres adultas não gestantes e o segundo mais prevalente em mulheres grávidas. O principal objetivo deste trabalho foi estudar a aderência, invasão e persistência intracelular de amostras pertencentes ao sorotipo V (88641-vagina/portador e 90186-sangue/paciente) usando as células epiteliais respiratórias A549. As amostras de EGB demonstraram capacidade de aderir e invadir as células epiteliais A549, mas somente a amostra 90186-sangue apresentou maior invasão quando comparada com a de vagina (P <0.001). Ambas as amostras demonstraram persistência intracelular sem replicação no interior das células A549. Apenas o isolado 90186-sangue sobreviveu dentro das células epiteliais até 24h de incubação (P <0,05). A fusão dos lisossomas das células epiteliais com vacúolos contendo bactérias foi observada em células A549 tratadas com Lyso Tracker Grenn DND-26 para todas as amostras testadas. Nossos dados indicam pela primeira vez que as amostras viáveis do sorotipo V permanecem dentro de vacúolos ácidos epiteliais. Curiosamente, a amostra 90186- sangue induziu vacuolização celular e a amostra 88641-vagina promoveu a morte celular após 7h de incubação. Finalmente, nossos resultados aumentam o nosso conhecimento sobre eventos celulares da fagocitose e da patogênese das doenças invasivas promovidas pelos EGB. / Group B Streptococcus (GBS) commonly colonizes healthy asymptomatic adults, yetunder certain circumstances displays the ability to invade host tissues, evade the immune system and cause serious invasive disease. Consequently, GBS remains the major cause of neonatal pneumonia, sepsis and meningitis. However, the pathogenesis of this infection is poorly understood. The serotype V is frequently associated with invasive diseases in non-pregnant adults and the second most prevalent in pregnant women. The aim of this work was to study the adherence; invasion and persistence intracellular of the GBS serotype V (88641-vagina/carriers and 90186-blood/patient) in epithelial cells A549. All GBS strains showed ability to adhere and invade the epithelial A549 cells, but GBS 90186-blood was more invasive than the vagina isolate (P<0,001). Both strains persisted intracellular, but without replicating into the A549 cells. Only 90186-blood strain survived within epithelial cells even after a 24h incubation (P<0,05). Fusion of epithelial lysosomes with bacteria containing phagocytic vacuoles was observed in A549 cells treated with Lysotracker Grenn DND-26 for all strains tested. Our data indicate for the first time that viable strains of serotype V remain within acidic epithelial vacuoles. Interestingly, the 90186-blood strain induced cellular vacuolization and 88641-vagina strain caused cell death after 7h incubation. Lastly, our results increase our knowledge about cellular events of phagocytosis and pathogeneses of GBS diseases.
38

Detecção e contagem de Streptococcus agalactiae em leite bovino pela reação em cadeia da polimerase / Detection and counting of Streptococcus agalactiae in bovine milk by polymerase chain reaction

Nara Ladeira de Carvalho 31 July 2013 (has links)
O objetivo do presente estudo foi: a) comparar dois métodos de detecção e contagem de S. agalactiae, (cultura microbiológica e qPCR) em leite de vacas e de tanques; b) determinar a sensibilidade analítica e a repetibilidade do diagnóstico por qPCR em relação à cultura microbiológica para detecção de S. agalactiae em amostras compostas de leite de vaca e de tanque. Foram utilizadas amostras de leite de vaca (n=31) e de tanque (n=150), as quais foram submetidas à cultura microbiológica e contagem de S. agalactiae por cultura de microbiologia convencional e qPCR. Para avaliar a sensibilidade analítica, foi construída uma curva padrão com amostras de leite desnatado reconstituído estéril contaminado artificialmente com S. agalactiae (ATCC 13813). Em apenas duas amostras não foi possível amplificação de DNA, o que indica que a qPCR foi capaz de detectar S. agalactiae, em 96% e 97%, do leite de vaca e de tanque, respectivamente. Embora a técnica qPCR tenha apresentado alta sensibilidade analítica, não houve equivalência de resultados de contagem S. agalactiae entre os dois métodos propostos. Os coeficientes de variação interensaio utilizados para avaliar a técnica qPCR foram < 5%, o que demonstra que a técnica possui repetibilidade adequada. Portanto, não houve equivalência entre a contagem de S. agalactiae por cultura microbiológica padrão e a técnica de qPCR, provavelmente pela alta sensibilidade da técnica qPCR em quantificar DNA de células inviáveis. No entanto, a qPCR apresentou-se como uma técnica sensível para identificação de S. agalactiae em amostras de leite de vaca e de taque. / The aim of this study was to: a) to compare two methods of detection and enumeration of S. agalactiae (microbiological culture and qPCR) in cow`s milk and bulk tank milks, b) to determine the analytical sensitivity and repeatability of the diagnosis by qPCR in relation to microbiological culture for detection of S. agalactiae on composite samples of cow\'s milk and bulk tank milk. Samples of cow\'s milk (n = 31) and bulk tank milk (n = 150), which were submitted to microbiological culture and enumeration of S. agalactiae by conventional microbiology culture and qPCR. To evaluate the analytical sensitivity, a standard curve was made with samples of sterile reconstituted skim milk artificially contaminated with S. agalactiae (ATCC - 13813). In two samples was not possible the amplification of DNA, indicating that qPCR was able to detect S. agalactiae, 96% and 97% cow\'s milk and bulk tank milk, respectively. Although the technique has presented qPCR high analytical sensitivity, there was no equivalent result of counting S. agalactiae between the two proposed methods. The interassay coefficients of variation technique used to evaluate the qPCR were <5%, which demonstrate that the technique has adequate repeatability. So there was no equivalence between the counts of S. agalactiae by standard microbiological culture and qPCR technique, probably due to the high sensitivity of qPCR technique to quantify DNA of unviable cells. However, the qPCR presented as a sensitive technique for identifying S. agalactiae in samples of cow\'s milk and bulk tank milk.
39

Diversité, dynamique et mobilité des éléments intégratifs conjugatifs (ICE) de Streptococcus agalactiae intégrés dans l'extrémité 3' du gène codant un ARNt Lysine / Diversity, dynamic and mobility of "Integrative Conjugative Elements" (ICEs) of Streptococcus agalactiae integrated into the 3' end of tRNA lysine gene

Puymège, Aurore 05 September 2013 (has links)
Les éléments intégratifs conjugatifs (ICE) et les éléments en dérivant jouent un rôle important dans le transfert horizontal de gènes chez les bactéries. Les ICE s'excisent par recombinaison site-spécifique sous forme circulaire, se transfèrent par conjugaison et s'intègrent dans un réplicon de la cellule réceptrice. Streptococcus agalactiae est une bactérie pathogène opportuniste responsable d'infections néonatales sévères chez l'Homme et d'infections chez les animaux (bovins, poissons, ...). Une analyse in silico antérieure de 8 génomes séquencés de Streptococcus agalactiae avait permis d'identifier plusieurs éléments intégrés dans l'extrémité 3' d'un gène codant un ARNtLys CTT dont 4 ICE putatifs. Cette étude élargie à 246 génomes a confirmé la prévalence et la diversité des éléments intégrés dans ce locus (présence d'ICE, éléments mobilisables en trans ou en cis, éléments composites, ... chez 98 % des souches). Une nouvelle famille d'éléments mobilisables putatifs s'intégrant dans l'oriT d'ICE a été caractérisée. L'étude fonctionnelle de 5 ICE a montré que 4 s'excisent du chromosome mais que seuls ICE_FSL S3-026_tRNALys et ICE_515_tRNALys se transfèrent par conjugaison au sein de l'espèce et vers S. pyogenes pour l'un des 2. Des éléments composites ont été obtenus par transfert d'ICE_515_tRNALys vers une souche possédant déjà un élément intégré dans ce locus. Un de ces éléments composites est capable de s'exciser et de se transférer par conjugaison conduisant à une mobilisation en cis de l'élément résident. En conclusion, les ICE et les éléments mobilisables (en cis ou en trans) sont très répandus chez S. agalactiae et contribuent à la plasticité génomique chez cette espèce / Integrative and Conjugative Elements (ICEs) and related elements are widespread in bacteria and play a key role in horizontal gene transfer. ICEs excise by site-specific recombination as a circular intermediate, promote their own transfer by conjugation and then integrate into a replicon of the recipient cell. Streptococcus agalactiae is an opportunistic pathogen that causes severe human invasive neonatal infections as well as infections in animals (bovine, fish...). Previous in silico analysis of eight sequenced genomes of S. agalactiae identified in each genome a different element integrated in the tRNALys CTT gene with four putative ICEs. This study, carried on 246 other genomes of S. agalactiae, confirmed the prevalence and diversity of elements integrated in this locus with 98% of the strains carrying an element (ICE, trans or cis mobilizable elements composite elements...). A novel family of putative mobilisable elements which can integrate in the oriT of ICE has been characterized. Functional analysis of 5 ICEs demonstrated that four can excise of the chromosome but that only ICE_FSLS3-026_tRNALys and ICE_515_tRNALys can transfer by conjugation inside the species or to S. pyogenes for one of them. Composite elements have been obtained after transfer of ICE_515_tRNALys to a recipient strain already carrying an element integrated in the same locus. One of this composite element is able to excise and transfer by conjugation to a new strain leading to cis-mobilization of the resident element.In conclusion, ICEs and cis and trans mobilizable elements are widespread in S. agalactiae and contribute to the genomic plasticity in this bacterial species
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Caractérisation des fonctions codées par les éléments intégratifs conjugatifs (ICE) intégrés dans un gène codant un ARNt lysine chez Streptococcus agalactiae : rôle dans le maintien des ICE, l'adaptation et la virulence de l'hôte / Caracterization of the functions encoded by conjugative and integrative elements (ICE) integrated in a gene encoding a tRNA lys in streptococcus agalactiae : role in the maintenance of ICE, adaptation and virulence

Chuzeville, Sarah 18 December 2012 (has links)
Le transfert horizontal participe à l'évolution rapide des génomes bactériens. Les éléments intégratifs et conjugatifs (ICE) sont des îlots génomiques capables de se transférer par conjugaison vers une bactérie receveuse. Streptococcus agalactiae est une bactérie pathogène opportuniste qui est à l'origine de problèmes sanitaires et économiques majeurs. Des études ont révélé la présence de nombreux ICE chez cette espèce, notamment à l'extrémité 3' d?un gène codant un ARNtLys. La fonctionnalité de l'ICE intégré à ce locus chez la souche 515 de S. agalactiae a été démontrée. Les fonctions véhiculées par ICE_515_tRNALys et pouvant conférer un avantage adaptatif ont été caractérisées et leur transfert vers d'autres espèces a été évalué. Les résultats ont montré que l'ICE confère à S. agalactiae des propriétés d'adhésion à l'hôte et de formation de biofilm et pourrait être impliqué dans l'agrégation cellulaire. Un antigène I/II codé par l'ICE est impliqué dans des phénotypes d'adhésion. De plus, un nouveau facteur co-hémolytique de type CAMP, codé par l'ICE et qui pourrait être impliqué dans la virulence et la survie des souches, a été caractérisé. La fonctionnalité de ces facteurs de virulence chez des espèces bactériennes pathogènes et non pathogènes a été établie. Les travaux ont également révélé la prévalence et la dynamique évolutive des ICE appartenant à la famille d'ICE_515_tRNALys et des fonctions adaptatives codées par ces éléments chez plusieurs espèces de streptocoques. En conclusion, les ICE de la famille d'ICE_515_tRNALys représentent des vecteurs de traits phénotypiques importants pour la virulence et la survie chez les streptocoques / Horizontal gene transfer is a rapid mechanism of evolution. Integrative and conjugative elements (ICEs) are genomic islands which can transfer by conjugation to recipient bacteria. Streptococcus agalactiae is a human and animal opportunistic pathogen that is responsible for major health and economic problems. Studies revealed the presence of numerous ICEs in S. agalactiae, in particular at the 3' end of a tRNALys encoding gene. The functionality of the element present in strain S. agalactiae 515 was demonstrated and was thus chosen as a model for this study. This work focused on the characterization of adaptive and virulence functions encoded by ICE_515_tRNALys and their transfer to other species. Results indicated that this ICE confers adhesion properties to host, increases biofilm formation and may be involved in cell aggregation. A new protein belonging to the antigens I/II family is involved in fibronectin binding and contributes to the biofilm phenotype. In addition, a new co-hemolytic CAMP factor encoded by ICE_515_tRNALys, which could be involved in virulence and bacterial survival, was identified and characterized. These virulence factors are functional in other bacterial species. This work also revealed the prevalence and evolutionary dynamics of ICE belonging to the family of ICE_515_tRNALys and adaptive functions encoded by these elements in several species of streptococci. In conclusion, ICEs of the ICE_515_tRNALys family represent vectors of phenotypic features important for virulence and survival in streptococci

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