The diploma thesis describes the data integration of data from different 3D technologies, specifically data of close range photogrammetry, aerial photogrammetry using RPAS and terrestrial laser scanning. The thesis deals mainly with fotogrammetric processing in ContextCapture software and data integration in this software. The thesis also describes a construction of a calibration field. The points of the field were used as ground control points and check points during processing. The accuracy of the outputs was evaluated by statistical testing of the coordinate deviations of the control points. The result of the thesis is 3D model of one of the buildings located in the AdMaS research center.

This master thesis analyzes the specific bottlenecks on the terrestrial communications in the area Břeclav. The aim is to suggest organizational and engineering measures which lead to increase traffic safety in selected road sections of terrestrial communications.

This thesis analyzes the specific critical accident points in the district Blansko. The purpose of this thesis is to suggest the organizational, constructional and technical measures needed to reduce the possibility of accidents, thus increasing road safety in these locations.

The theme of the diploma thesis will be analyzing of a specific road sections with high accident rates on public roads in the Zlin region with the emphasis of decreasing the number of traffic accidents. The materials and valuable informations will be obtained in cooperation with the Police of the CR - Department of traffic police or by examination of selected sections. The main criteria for selecting of the hazardous sections, is the amount of the accidents in the selected sections which will be thoroughly analyzed. Based on the analysis of the accidents in the critical sections will be proposed administrative and constructional solutions, leading to the increased safety of the selected sections of the roads. The results of the diploma thesis are primarily designated for Police of the CR and local authorities where it can be put in effective use.

Understanding biological responses to climate change is a primary concern in conservation biology. Of the ecosystems being rapidly impacted by climate change, those in the high-elevation tropics are among the most poorly studied. The tropical Andean biosphere includes record elevations above 5000 meters, where extreme environmental conditions challenge many organisms. In the Cordillera Vilcanota of southern Peru, frogs including Pleurodema marmoratum and Telmatobius marmoratus have expanded their ranges to 5244 – 5400 m into habitats created by glacial recession, making them among the highest recorded amphibians on Earth. To understand how hydrologic alterations from loss of glacial meltwater and climatic fluctuations affect these amphibians, I conduct a 36-month field study of reproductive phenology and develop a method to distinguish glacial meltwater-fed ponds and precipitation-fed ponds utilizing natural variation in stable isotopes of water (18O, 2H, and d-excess). My results suggest that some ponds critical for breeding populations may have lost their connection to glacial runoff. Ongoing deglaciation may transform these ponds from permanent to ephemeral habitats, leading to the extirpation of the fully aquatic species, T. marmoratus. The 2015/2016 El Niño delayed the onset of the 2015 wet season and shortened the P. marmoratum breeding and tadpole development period in ephemeral ponds. I examine regional patterns of amphibian occupancy and prevalence of the deadly amphibian pathogen Batrachochytrium dendrobaditis in unexplored high-elevation zones that were until recent decades covered by permanent ice. Next, I examine adaptive strategies that allow these two frog species to persist in the harsh high-elevation environment. Pleurodema marmoratum withstands the daily freeze-thaw cycle by utilizing a wide thermal tolerance range (from below 0ºC to CTmax > 32ºC) and I report the first evidence of frost tolerance in a tropical frog. My research compares divergent strategies allowing two anuran species to persist through disease and variable, extreme conditions in high-mountain environments, providing a better understanding of responses to and consequences of climate change for some of the world's highest life forms.

Successful reproduction in salamanders is driven by behavioral, environmental, and temporal interactions among adults. While much of our understanding of salamander mating systems is based upon either courtship behavior of both sexes or aspects of female choice, the decisions made by males regarding where to place spermatophores is much less quantified. In this study, we mapped male spermatophore placement in the spotted salamander (Ambystoma maculatum) with respect to ecological and spatial locations within a vernal pool complex in Charles City County, Virginia. The overall goal was to use the spatial and ecological placement of spermatophores to determine if individuals deposit spermatophores randomly within the vernal pool or if males exhibited specific preferences for deposition. Using comprehensive surveys of the vernal pools and individual spermatophores within a 0.5m2 grid and terrestrial LIDAR, a total of 218 spermatophores were identified and mapped. We repeated these surveys for two successive breeding seasons. Placement occurred at an intermediate depth and an intermediate distance to the edge. Males also preferred to place spermatophores on leaf substrate as opposed to sticks or conifer needles. The physical placement of spermatophores exhibited autocorrelation in space during single reproductive events as well as across breeding seasons. These results suggest that males actively select for specific locations within a pool for spermatophore placement-a proverbial Goldilocks zone-which may be consistent with increased reproductive success. This information is key to understanding salamander mating system parameters in this species and may contribute to developing more effective management strategies.

This thesis focuses on the genetical and morphological diversity of plaited door snail (Cochlodina laminata). While small distribution ranges are typical for most species belonging to genus Cochlodina, the distribution range of C. laminata covers most of the European continent, except for its coolest and warmest parts. It has been previously suggested that this species might in fact be a complex of several species and large genetical as well as morphological diversity has been mentioned - however, yet undescribed - in previous studies. Sequences of two mitochondrial genes were used (16S rDNA, COI) and thirteen morphological characteritics have been assessed to investigate this diversity. I discovered that the current concept of C. laminata as a species is not in accordance with the discovered genetical nor morphological variability. The original species C. laminata/C. dubiosa form a common species complex and also interpretation of C. fimbriata will need to be assessed in more detail in the future. Other Central European species are valid species.

Leaves in forests assimilate carbon from the atmosphere and woody components store the net production of that assimilation. Separate structure measurements of leaves and woody components advance the monitoring and modeling of forest ecosystem functions. This dissertation provides a method to determine, for the first time, the 3-D spatial arrangement and the amount of leafy and woody materials separately in a forest by classification of lidar returns from a new, innovative, lidar scanner, the Dual-Wavelength Echidna® Lidar (DWEL). The DWEL uses two lasers pulsing simultaneously and coaxially at near-infrared (1064 nm) and shortwave-infrared (1548 nm) wavelengths to locate scattering targets in 3-D space, associated with their reflectance at the two wavelengths. The instrument produces 3-D bispectral "clouds" of scattering points that reveal new details of forest structure and open doors to three-dimensional mapping of biophysical and biochemical properties of forests. The three parts of this dissertation concern calibration of bispectral lidar returns; retrieval of height profiles of leafy and woody materials within a forest canopy; and virtual reconstruction of forest trees from multiple scans to estimate their aboveground woody biomass. The test area was a midlatitude forest stand within the Harvard Forest, Petersham, Massachusetts, scanned at five locations in a 1-ha site in leaf-off and leaf-on conditions in 2014. The model for radiometric calibration assigned accurate values of spectral apparent reflectance, a range-independent and instrument-independent property, to scattering points derived from the scans. The classification of leafy and woody points, using both spectral and spatial context information, achieved an overall accuracy of 79±1% and 75±2% for leaf-off and leaf-on scans, respectively. Between-scan variation in leaf profiles was larger than wood profiles in leaf-off seasons but relatively similar to wood profiles in leaf-on seasons, reflecting the changing spatial heterogeneity within the stand over seasons. A 3-D structure-fitting algorithm estimated wood volume by modeling stems and branches from point clouds of five individual trees with cylinders. The algorithm showed the least variance for leaf-off, woody-points-only data, validating the value of separating leafy and woody points to the direct biomass estimates through the structure modeling of individual trees.

Tidal freshwater wetlands provide valuable ecosystem services such as nutrient cycling, coastal flood control, and reproductive habitat for early life stages of economically and ecologically important fishes. The nutrient rich environments that tidal freshwater wetlands occur in support high levels of primary productivity of phytoplankton and vegetation that provide essential reproductive habitat for anadromous clupeid fishes (Alosa spp., Brevoortia tyrannus) in Chesapeake Bay tributaries. Seasonal retention of clupeid eggs and larvae within tidal freshwater habitats may enhance early growth, survival, and year class strength. The primary goal of the present study was to characterize the relative importance of tidal freshwater wetlands to the early life history stages of anadromous, migratory, and resident clupeid fishes in the lower James River. From 2014-2018, conical tow nets were used to collect ichthyoplankton samples from representative locations within the tidal freshwater marsh-creek complex of Curles Neck Creek, Virginia during the period of February through May. Boat electrofishing was used to sample juvenile target clupeids within the marsh-creek complex during March through November 2014-2018. A strong positive correlation between larval and juvenile Blueback Herring and Atlantic Menhaden, supported the hypothesis of seasonal in-system retention. This was the first published study to describe spatial and temporal patterns of occurrence of clupeid fishes with varying life history strategies in a tidal freshwater marsh and highlighted the importance of tidal freshwater marshes as nursery habitat.

The ability of fast and accurate acquiring of large 3D spatial data is the main benefit for consideration of a terrestrial laser scanner in deformation monitoring. The objective of this paper is to discuss this technique with support of practical experiments performed inside a laboratory. It also includes measuring changes from millimetre to sub millimetre level and a comparison of measurements from a terrestrial laser scanner with measurements of other instruments. Various areas of applications are reviewed. The report discusses a surface modeling method to estimate deformation parameters of objects, such as planar, spherical and cylindrical surface representations. Illustrative numerical examples are performed by simulating randomly generated sample point coordinates for estimation of changes of modeled planar and cylindrical surfaces. The practical experiments were performed using a scan of a carton box, a ball and a rounded paper holder, which correspond to the planar, spherical and cylindrical surfaces, respectively. Independent measurements were performed using a total station and a measuring tape to make a comparison with the scanner measurements. A statistical test was performed independently for the changes obtained from each type of modeled surface in order to check whether the movement is real or due to measurement noises.  A significant change of the normal of a plane was detected between epochs, and similar results were obtained from both scanner and total station measurements. The normal of the plane was rotated by  between scan epochs. A translation of 3.2 and 3.7 millimetres were detected between scan epochs for the center of the sphere and axis of the cylinder, respectively. Only the scanner data was used in this case. From the scanner measurement changes in radii of the sphere and the cylinder were obtained as 1.6 and 3.1 millimetres, respectively between scan epochs. The measurement of the scanner was verified by performing independent measurements using measuring tape. And hence the change in radii of the sphere and the cylinder were obtained as 2.5 and 4 millimetres, respectively.