Le parvovirus adéno-associé (AAV) possède un génome à ADN linéaire simple brin de 4,7kb encadré par deux séquences palindromiques inversées et identiques de 145 nucléotides appelées ITRs, requises en cis pour la réplication et l’encapsidation de l’ADN viral. Dans un AAV recombinant (rAAV), la totalité de la partie codante du génome viral est remplacée par une cassette d’expression et seuls les ITRs sont conservés.<p>\ / Doctorat en sciences biomédicales / info:eu-repo/semantics/nonPublished

Riboswitches have gained attention as tools for synthetic biology, since they enable researchers to reprogram cells to sense and respond to exogenous molecules. In vitro evolutionary approaches produced numerous RNA aptamers that bind such small ligands, but their conversion into functional riboswitches remains difficult. We previously developed a computational approach for the design of synthetic theophylline riboswitches based on secondary structure prediction. These riboswitches have been constructed to regulate ligand dependent transcription termination in Escherichia coli. Here, we test the usability of this design strategy by applying the approach to tetracycline and streptomycin aptamers. The resulting tetracycline riboswitches exhibit robust regulatory properties in vivo. Tandem fusions of these riboswitches with theophylline riboswitches represent logic gates responding to two different input signals. In contrast, the conversion of the streptomycin aptamer into functional riboswitches appears to be difficult. Investigations of the underlying aptamer secondary structure revealed differences between in silico prediction and structure probing. We conclude that only aptamers adopting the minimal free energy (MFE) structure are suitable targets for construction of synthetic riboswitches with design approaches based on equilibrium thermodynamics of RNA structures. Further improvements in the design strategy are required to implement aptamer structures not corresponding to the calculated MFE state.

M.Tech. (Department of Chemistry, Faculty of Applied and Computer Sciences), Vaal University of Technology. / To replace the conventional wastewater treatment technology, photocatalysis has the best potential due to its utilization of visible light to photodegrade organic and inorganic contaminants. However, agglomeration of nanoparticles leads to serious decrease in photocatalytic performance when applied in slurry form, due to hindrance effect. TiO2 semiconductor photocatalyst mediated advanced oxidation process is referred to as one of the most efficient technologies to degrade organic pollutants in water. However, TiO2 semiconductor for water purification hinders large scale applicability due to poor activity under visible light and the recombination of photogenerated electron and hole pairs. The modification of TiO2 semiconductor photocatalyst with carbon dots (CDs) is of high importance due to low toxicity, aqueous stability, enhanced surface area, economic feasibility, good biocompatibility and chemical inertness of CDs. Herein, strategies are highlighted to improve the activity of TiO2 semiconductor photocatalyst by coupling it with CDs and Fe2O3. In this study, we study the morphological influence of TiO2 nanostructures on photocatalytic degradation of tetracycline hydrochloride present in industrial wastewater. TiO2 nanostructures, nanotubes, nanospheres and nanofibers were Synthesized using the hydrothermal technique. TiO2 nanotubes, nanofibers and nanospheres were prepared by the hydrothermal treatment of TiO2 nanoparticles with different NaOH concentrations (5, 10 and 12 N) at 120 and 140 ˚C; afterwards, HCl was added until it reached pH 2. Both the crystalline phase and coordination of the TiO2 nanotubes, nanofibers and nanospheres were composed principally. Likewise, the surface area, pore volume and pore size of the TiO2 nanotubes, nanofibers and nanospheres changed with the NaOH rinsing treatment. The photocatalytic activity for tetracycline degradation were strongly enhanced by the nanofibers and nanotubes in the basic and acid media, respectively, showing a relationship between their structure and the medium. TiO2 nanostructures and the composite material were characterized by scanning electron microscope\SEM), X-Ray Diffraction (XRD), transmission electron microscope (TEM) and Fourier transform infrared (FTIR). BET surface area analysis was carried out using nitrogen adsorption desorption curves. The results show that TiO2 morphology had great influence on photocatalytic degradation of tetracycline hydrochloride due to difference in specific surface area and pore volume of nanostructures. The photocatalytic degradation experiments were carried out for three hours under visible-LED light. TiO2 nanofibers show better degradation performance than nanotubes and nanospheres due to presence of large surface area for reaction, higher porosity with dispersion of active sites at different length scales of pores and presence of oxygen vacancies. Agricultural biomass pine bark serves as a carbon source and was doped into TiO2-nanofibers (TNF) to fabricate the composite material (CD-TNF). CD-TNF composite nanofibers were prepared via a facile hydrothermal method. This study revealed that the photocatalytic efficiency of tetracycline (TC) under visible light irradiation of the composite nanofiber is higher than that of pure TiO2-nanofiber. The anchored CDs can both enhance the light absorption and suppress photogenerated electron hole recombination which results in the enhancement of catalytic and antibacterial properties. The CDs can better capture and transfer photogenerated electrons through the Ti-O-C and Fe-O-C bonds. Moreover, CDs can improve the utilization of photogenerated electrons and the electrons in CDs are captured by O2 to produce O2•- radicals and the role of O2•- radicals in the photocatalytic process is significantly improved. A new efficient photocatalyst consisting of TiO2/CD/Fe2O3 composite material was Synthesized by the hydrothermal treatment and applied in the photodegradation of 5 mg/L tetracycline hydrochloride (TC) under visible-LED light. The CDs/TiO2/Fe2O3 composite showed enhanced photocatalytic performance for tetracycline photodegradation when compared with TiO2/CDs and pure TiO2 under the visible light irradiation. The mechanism of the improved photocatalytic activity over CDs/TiO2/Fe2O3 was also investigated. The influence of the interface formation between Fe2O3 and TiO2/CDs affects severely the charges separation efficiency and enhances the electron transfer to keep on the existence of Fe3+/Fe2+ moieties that take significant role in the reaction mechanism.

Ph. D. (Department of Chemistry, Faculty of Applied and Computer Sciences), Vaal University of Technology. / Aromatic organic contaminants are difficult to biodegrade, and thus effective green technologies are required to remove these pollutants from the ecosystem. Tetracycline antibiotic, an organic water pollutant, can be degraded by heterogeneous photocatalysis using an appropriate catalyst, with capability in converting the visible light energy into active species. The thesis focused on silver nanoparticles anchored on silver bromide (Ag/AgBr) as a plasmonic catalyst dispersed on activated carbon (ACK), were used as a photocatalyst (AABR-ACK) in tetracycline removal. The aim is to develop a catalyst that is active in low intensity visible light, whilst the addition of activated carbon will increase the light absorption and separate the charge pairs, after the photocatalyst has been excited by the visible light. The activated carbons were derived from pinecone pyrolyzed in a microwave. The pinecone mass to potassium hydroxide impregnation ratio and microwave pyrolysis time influenced the activated carbon properties. An impregnation ratio of 2.24 and microwave pyrolysis time of 16 minutes at constant microwave power of 400 W yielded the activated carbon with the best-developed porous structure and electrochemical properties. This activated carbon was used during the optimisation of the Ag/AgBr activated carbon (AABR-ACK) catalysts preparation using a thermal polyol precipitation method and response surface methodology. The most active catalyst was the AABR-ACK 11 obtained by a preparation temperature of 140 ºC, time (17.50 minutes), mass of surfactant and activated carbon (0.26 g and 0.03 g) respectively. This catalyst had an ordered nanospheres morphology, reduced electron-hole recombination rate, better electrochemical properties and exhibited enhanced activity on the tetracycline antibiotic removal in comparison to other Ag/AgBr activated carbon catalysts. A percentage degradation of 92% was obtained in 180 minutes were obtained with the AABR-ACK 11 catalyst. The photocatalyst prepared using the best activated carbon derived from pinecone developed in this study was compared to photocatalysts prepared using commercial activated carbon and biochar. The Ag/AgBr activated carbon catalysts using pinecone-derived activated carbon degraded the tetracycline to 92%, which is significantly higher than the percentage degradations (80% and 74%) for the catalyst prepared using commercial activated carbon and biochar catalysts respectively. The higher activity of the Ag/AgBr activated carbon catalysts using pinecone-derived activated carbon was due to the conductive attributes of the catalyst support for accelerated transfer of photo-induced electrons. The Ag/AgBr activated carbon catalysts using pinecone- derived activated carbon also exhibited better performance on tetracycline removal when compared to photocatalysts reported in literature. Two catalyst preparation methods, thermal polyol and deposition precipitation, were compared. The thermal polyol method yielded a more active catalyst for the degradation of the tetracycline in comparison to the deposition precipitation method. The degradation reaction conditions such as pH, light intensity and degradation temperature influenced the rate of the reaction. The highest rate of degradation was obtained at a pH of seven, white light and 40 ºC temperature. The intermediate products formed because of hydroxylation, deamination, demethylation and dehydration during the photocatalytic degradation of tetracycline antibiotics were identified using liquid chromatography mass spectrometer. Quenching experiments with hydroxyl, hole, and superoxide anion species showed that the most important radical responsible for the tetracycline degradation was the superoxide anion radical.

Saskatchewan is the only province in Canada to have routinely tested the antimicrobial susceptibility of all provincially reported human cases of campylobacteriosis. From 1999 to 2006, 1378 human Campylobacter species infections were tested for susceptibility at the Saskatchewan Disease Control Laboratory using the Canadian Integrated Program for Antimicrobial Resistance Surveillance panel and minimum inhibitory concentration (MIC) breakpoints. Of these, 1200 were C. jejuni, 129 were C. coli, with the remaining made up of C. lari, C. laridis, C. upsaliensis and undifferentiated Campylobacter species. Campylobacter coli had significantly higher prevalences of ciprofloxacin resistance (CIPr), erythromycin resistance (ERYr), combined CIPr-ERYr resistance and multidrug resistance (to three or greater drug classes) than C. jejuni. Logistic regression models indicated that CIPr in C. jejuni decreased from 1999 to 2004 and subsequently increased in 2005 and 2006. The risk of CIPr was significantly increased in the winter months (January to March) compared to other seasons. A comparison of logistic regression and Cox proportional hazard survival models found that the latter were better able to detect significant temporal trends in CIPr and tetracycline resistance by directly modeling MICs, but that these trends were more difficult to interpret. Scan statistics detected significant spatial clusters of CIPr C. jejuni infections in urban centers (Saskatoon and Regina) and temporal clusters in the winter months; the space-time permutation model did not detect any space-time clusters. Bernoulli scan tests were computationally the fastest for cluster detection, compared to ordinal MIC and multinomial antibiogram models. eBURST analysis of antibiogram patterns showed a marked distinction between case and non-case isolates from the scan statistic clusters. Multilevel logistic regression models detected significant individual and regional contextual risk factors for infection with CIPr C. jejuni. Patients infected in the winter, that were between the ages of 40-45 years of age, that lived in urban regions and that lived in regions of moderately high poultry density had higher risks of a resistant infection. These results advance the epidemiologic knowledge of CIPr C. jejuni in Saskatchewan and provide novel analytical methods for antimicrobial resistance surveillance data in Canada. / Saskatchewan Disease Control Laboratory (Saskatchewan Ministry of Health); Laboratory for Foodborne Zoonoses (Public Health Agency of Canada); Centre for Foodborne, Environmental and Zoonotic Infectious Diseases (Public Health Agency of Canada); Ontario Veterinary College Blake Graham Fellowship

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